Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq6222 120 3e-22 seq7813 105 6e-18 >seq6222 Length=12937 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | || || ||||||||||||||||| || |||||| ||||| Sbjct 4668 ACCAAATGGAGTGTAGATTCCTTTTGAATGTTGTAGTCAGACAGGGTACGACCGTCTTCC 4727 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | ||||| |||| | |||| ||| |||||||| ||||| |||||||||||||| | Sbjct 4728 AATTGTTTGCCGGCGAAAATTAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCTTGA 4787 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| ||| | | || | ||| |||| || || ||||| | || | ||| || Sbjct 4788 ATTTTGGCTTTGACGTTCTCAATAGTGTCGGAAGGTTCGACTTCCAAAGTGATCGTCTTT 4847 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || |||||||| | |||||| ||||| Sbjct 4848 CCCGTGAGAGTTTTGACGAAAATTTGCAT 4876 Score = 113 bits (124), Expect = 4e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 ||||| || | |||||| || | | | || |||||||| ||||||||||| || |||| Sbjct 4884 CGCAAACGGAGAACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCAGACAAGGTA 4943 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || ||||| | ||||| || | | || | ||| |||||||| ||||| |||||| Sbjct 4944 CGGCCGTCTTCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCGGGAGGAATGCCT 5003 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 ||||| || ||||| || | | ||| | || |||| |||||| ||||| | Sbjct 5004 TCTTTGTCTTGGATTTTAGCCTTGACGTTTTCAATGGTGTCGGACGGCTCAACTTCCAAG 5063 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || ||||||| ||||| | |||||| |||||| Sbjct 5064 GTAATGGTCTTGCCAGTCAAGGTTTTGACGAAAATTTGCATG 5105 Score = 102 bits (112), Expect = 8e-17 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 ||||| || | |||||| || | | | || |||||||| || ||||| || | |||| Sbjct 4200 CGCAAACGTAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGATAAGGTA 4259 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || ||||| | |||||| || | |||||| || |||||||| || || |||||| Sbjct 4260 CGACCGTCTTCCAACTGTTTGCCAGCGAAGATTAATCGTTGTTGATCGGGGGGAATGCCT 4319 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 ||||| || ||||| ||| | | ||| | || || | ||||| ||||| | Sbjct 4320 TCTTTGTCTTGGATTTTGGCTTTGACGTTTTCAATGGTGTCAGAGGGCTCGACTTCCAAA 4379 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| || || ||||| || | |||||||||||| Sbjct 4380 GTGATGGTTTTGCCGGTAAGAGTCTTCACGAAAATCTGCAT 4420 Score = 102 bits (112), Expect = 8e-17 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 ||||| |||| |||||| || | | | || |||||||| || ||||| || || |||| Sbjct 4428 CGCAAACGCAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGACAAGGTA 4487 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || ||||| || || || |||| |||| ||||| ||||| || || || |||||| Sbjct 4488 CGACCGTCTTCCAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGGAATGCCT 4547 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 ||||| || || || ||| | | ||| | || || | |||||| ||||| | Sbjct 4548 TCTTTGTCTTGGATCTTGGCTTTGACGTTTTCAATGGTGTCAGACGGCTCAACTTCCAAA 4607 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| || |||| ||| || | ||| || ||||| Sbjct 4608 GTGATGGTTTTGCCGGTCAAAGTCTTCACGAAGATTTGCAT 4648 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | | | || ||||| ||||||||||| || || ||||| | Sbjct 5118 CGCAATACCAAATGCAGGGTGGATTCTTTCTGAATGTTGTAATCTGACAACGTACGACCA 5177 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | || || || | | |||| ||| || || || || || || |||||||| Sbjct 5178 TCTTCCAATTGCTTGCCAGCGAAAATTAAACGTTGCTGGTCAGGGGGGATACCTTCTTTG 5237 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| ||| | | ||| | ||||| | ||||| ||||||| || | Sbjct 5238 TCTTGAATTTTGGCTTTGACGTTTTCAATGGTATCCGAAGGCTCTACTTCGAGGGTAATA 5297 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || ||||| || || | ||| || ||||| Sbjct 5298 GTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 5332 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| || | ||| | | || ||||| || |||||||||||| || || Sbjct 3971 ACGCAGACGCAGGACTAGATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCGGACAAAGT 4030 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| | ||| || |||| | | || | ||| |||||||| ||||| ||||| Sbjct 4031 GCGACCATCTTCTAACTGCTTGCCGGCAAAAATCAAACGTTGTTGATCGGGAGGAATGCC 4090 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || ||||| || | | || | || || | || || ||||| | Sbjct 4091 TTCCTTGTCTTGGATTTTAGCCTTGACGTTCTCAATGGTGTCTGATGGTTCGACTTCCAA 4150 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||| || ||||| || ||||||| ||||||||||| Sbjct 4151 AGTGATCGTCTTGCCAGTGAGGGTTTTTACAAAAATCTGCAT 4192 >seq7813 Length=5936 Score = 105 bits (116), Expect = 6e-18 Identities = 321/485 (66%), Gaps = 21/485 (4%) Strand=Plus/Plus Query 147361 TCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAA 147420 ||||| |||||||| | || | || ||||| || | | |||||| || | || Sbjct 1774 TCAATGATCTTGTTCAAATTCCCTGTGACGACTTTGGTGACTTCTTTGAGCTTGACAAAG 1833 Query 147421 TCATAAGTCCCGTCTTCGA-CACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCA 147479 ||||| ||| ||||| |||| || ||| || || || || |||| |||||| Sbjct 1834 TCATACGTCTTATCTTCTTTCACGAACATATT----CAGAGCAATGGATGCCAAATTGCA 1889 Query 147480 GACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTT 147539 ||| || | || || | | || | || ||||| | ||||| || |||||| Sbjct 1890 GACAGCTATTTCGTCCGGAGAGGAATATTCGACAATTTCCGTACACAGATTCGAGCATTT 1949 Query 147540 TATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTA 147599 ||| ||||| ||||||||||| ||| || || || || || ||| |||| ||||| Sbjct 1950 GATGGTTCCCAGGTTTTGCTGATTAGATTTTCGGTTACAGGCATCCTTGTAGAGGATGTA 2009 Query 147600 CGGTCCGCCGGTCTCGACTTGCGTTTCAACGATA---AACCTATGCAGGTCCTGCGCTCG 147656 || ||| || || ||||| | |||| ||| ||| | || | ||| || || Sbjct 2010 AGGCGTGCCCGTTTCCACTTGGGAGTCAATAATAGCCGACCAA---AGTTGCTGGGCACG 2066 Query 147657 CACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAA---CTC 147713 || | ||||||| ||||||| ||||||| | ||| || ||||| ||| Sbjct 2067 AACTTGACGCCGATATTTGCCCTCGGATTCGTACTGACGGTATAAAGCTTCAAATTTCTC 2126 Query 147714 GTCGCCGTAGCAATC-GGCAAGGCCGGGACACTGATGC-GGACACATCAGCGACCACATG 147771 || || ||| || ||||| ||||| || | ||| || ||||||| |||||| Sbjct 2127 -TCCCCATAG--GTCATGCAAGCCCGGG-CA-TTCTGCAGGGCACATCAAACTCCACATT 2181 Query 147772 TCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCG 147831 |||| | | |||||| ||||||||| || |||| |||||| ||||| | | ||| Sbjct 2182 TCGTTCTTTTCAACGCGGCGCATAAACTCGTCAGGCATCCACAGTGCGTAAAATAAATCA 2241 Query 147832 CGCGC 147836 ||||| Sbjct 2242 CGCGC 2246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476249994244440