Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq14065 102 3e-18 seq1524 102 3e-18 seq20713 98.7 3e-17 seq20714 95.1 4e-16 seq20712 95.1 4e-16 >seq14065 Length=20645 Score = 102 bits (112), Expect = 3e-18 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 2765 TATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 ||| || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 957 TATAGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 898 Query 2825 AACCCCGGGCTTCAGC 2840 | |||||| ||| || Sbjct 897 GATCCCGGGTTTCGGC 882 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 756 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 697 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 696 CCGGGTTTCGGC 685 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1370 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1429 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1430 CCGGGTTTCGGC 1441 Score = 95.1 bits (104), Expect = 4e-16 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 67 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 8 Query 2829 CCGGG 2833 ||||| Sbjct 7 CCGGG 3 >seq1524 Length=14256 Score = 102 bits (112), Expect = 3e-18 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 2762 GTTTATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGG 2821 || ||| || ||| |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 5366 GTGTATAGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGG 5307 Query 2822 TTCAACCCCGGGCTTCAGC 2840 ||| | |||||| ||| || Sbjct 5306 TTCGATCCCGGGTTTCGGC 5288 >seq20713 Length=1358 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 511 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 452 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 451 CCGGGTTTCGGC 440 Score = 95.1 bits (104), Expect = 4e-16 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCT 2835 |||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| | Sbjct 1357 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGGTT 1298 Query 2836 TCAGC 2840 || || Sbjct 1297 TCGGC 1293 >seq20714 Length=202 Score = 95.1 bits (104), Expect = 4e-16 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCT 2835 |||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| | Sbjct 200 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGGTT 141 Query 2836 TCAGC 2840 || || Sbjct 140 TCGGC 136 >seq20712 Length=20311 Score = 95.1 bits (104), Expect = 4e-16 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCT 2835 |||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| | Sbjct 20311 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGGTT 20252 Query 2836 TCAGC 2840 || || Sbjct 20251 TCGGC 20247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15839089659705