Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq6222 91.5 1e-13 >seq6222 Length=12937 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || || ||||| ||| | ||||| | ||||| || ||| | Sbjct 4648 ATGCAAATCTTCGTGAAGACTTTGACCGGCAAAACCATCACTTTGGAAGTTGA-GCCGTC 4590 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || ||| || || || ||||| || || || || || || Sbjct 4589 TGACACCATTGAAAACGTCAAAGCCAAGATCCAAGACAAAGAAGGCATTCCCCCTGACCA 4530 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 ||| | ||||| | || |||||| ||||| ||||| | | | | |||| | ||||| Sbjct 4529 ACAACGTCTCATCTTCGCCGGCAAGCAACTGGAAGACGGTCGTACCTTGTCTG--ATTAC 4472 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||| ||||||||||||||| |||| || || | | ||| |||| || Sbjct 4471 AATATCCAAAAAGAATCCACCCTTCACTTGGTTCTGCGTTTGCGAGGCGG 4422 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | || || || | || || ||||||| || ||| | Sbjct 5332 ATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACTATTACCCTCGAAGTAGA-GCCTTC 5274 Query 25235 G-ATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 | |||| || || | || ||| |||||| || ||||| ||||| || || || || Sbjct 5273 GGATACCATTGAAAACGTCAAAGCCAAAATTCAAGACAAAGAAGGTATCCCCCCTGACCA 5214 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 |||| | | |||| || ||||| ||| | ||||||| | | | |||||| ||||| Sbjct 5213 GCAACGTTTAATTTTCGCTGGCAAGCAATTGGAAGATGGTCGTACGTTGTCAG--ATTAC 5156 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 || ||||| |||||||||||| | ||||| || || Sbjct 5155 AACATTCAGAAAGAATCCACCCTGCATTTGGTATT 5121 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || || | ||||| ||| | ||||| | |||||||| || Sbjct 4420 ATGCAGATTTTCGTGAAGACTCTTACCGGCAAAACCATCACTTTGGAAGTCGAGCCCTCT 4361 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || ||| ||||| || ||||| || || || |||||||| Sbjct 4360 GACACCATTGAAAACGTCAAAGCCAAAATCCAAGACAAAGAAGGCATTCCCCCCGATCAA 4301 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| || | || | || |||||||| | ||||| | | | | | ||||||||| Sbjct 4300 CAACGATTAATCTTCGCTGGCAAACAGTTGGAAGACGGTCGTACCTTATCTGATTACAAT 4241 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||||||||||||| |||| || || || | ||| |||| || Sbjct 4240 ATCCAAAAAGAATCCACCCTTCACTTGGTTCTACGTTTGCGAGGCGG 4194 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| || || || ||| | ||||| | ||||| ||| | | Sbjct 3964 ATGCAAATCTTCGTGAAAACCTTGACGGGCAAAACCATCACCTTGGAAGTTGAACCGTCC 3905 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || ||| |||||| || || || ||||| || ||||||||| Sbjct 3904 GACACCATTGAAAACGTCAAAGCCAAAATTCAAGACAAGGAAGGTATTCCTCCCGATCAG 3845 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTACA 25352 ||| | | || | || ||| || ||| | ||||||| | | | |||| ||| || | Sbjct 3844 CAACGTTTGATCTTCGCCGGTAAGCAATTGGAAGATGGTCGTACCTTGTC--CGACTATA 3787 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||| || || ||||| || | ||||| || || Sbjct 3786 ATATCCAGAAGGAATCAACTCTCCATTTGGTCTT 3753 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||||||||| | || || || ||||||| | ||||||||| ||| | Sbjct 4192 ATGCAGATTTTTGTAAAAACCCTCACTGGCAAGACGATCACTTTGGAAGTCGAA-CCATC 4134 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || ||| | || || ||||| || || || || || || |||||||| Sbjct 4133 AGACACCATTGAGAACGTCAAGGCTAAAATCCAAGACAAGGAAGGCATTCCTCCCGATCA 4074 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | | |||| | |||||| || | ||||||| | | | | | ||| ||||| Sbjct 4073 ACAACGTTTGATTTTTGCCGGCAAGCAGTTAGAAGATGGTCGCACTTTGTCCGACTACAA 4014 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383 || || |||||||| || ||||| |||| Sbjct 4013 CATCCAGAAAGAATCTACTCTTCATCTAGT 3984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444757079645280