Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_026430.1
Length=125767
Score E
Sequences producing significant alignments: (Bits) Value
seq6222 104 2e-17
>seq6222
Length=12937
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319
||||||||||| || ||||| ||||||||||||||||||||| ||||| || || |
Sbjct 5104 ATGCAAATTTTCGTCAAAACCTTGACTGGCAAGACCATTACCTTGGAAGTTGAGCCGTCC 5045
Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379
|| | ||| | || || ||||| |||||||||||| | || ||||||
Sbjct 5044 GACACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGCATTCCTCCCGATCAA 4985
Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439
||| | | |||| || ||||||||||| ||||| || || || ||||||
Sbjct 4984 CAACGTTTGATTTTCGCTGGCAAACAATTGGAAGACGGCCGTACCTTGTCTGACTACAAC 4925
Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486
|| ||||||||||| || || || || || | | || ||||| ||
Sbjct 4924 ATCCAAAAAGAATCCACCCTTCACTTGGTTCTCCGTTTGCGAGGCGG 4878
Score = 104 bits (114), Expect = 2e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 106258 AAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCG 106317
|||||||||| || || || || |||| |||||||| |||||| | ||| ||| ||
Sbjct 5334 AAATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACTATTACCCTCGAAGTAGAGCCTT 5275
Query 106318 GCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATC 106377
||| | ||| | || ||| |||||| ||||||||||| | ||| ||| |
Sbjct 5274 CGGATACCATTGAAAACGTCAAAGCCAAAATTCAAGACAAAGAAGGTATCCCCCCTGACC 5215
Query 106378 AACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACA 106437
| ||| | | |||| || ||||| ||||| |||||| | || || |||||||
Sbjct 5214 AGCAACGTTTAATTTTCGCTGGCAAGCAATTGGAAGATGGTCGTACGTTGTCAGATTACA 5155
Query 106438 ACATACAAAAAGAATCTACACTACATTTAGTATTG 106472
|||| || |||||||| || || ||||| ||||||
Sbjct 5154 ACATTCAGAAAGAATCCACCCTGCATTTGGTATTG 5120
Score = 102 bits (112), Expect = 7e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319
||||||||||| || ||||| | || || ||||| || || ||||| ||||| |
Sbjct 4876 ATGCAAATTTTCGTCAAAACTCTCACGGGAAAGACGATCACTTTGGAAGTCGAACCTTCC 4817
Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379
|| || ||| | || ||| |||||| || ||||||||| | || |||||||
Sbjct 4816 GACACTATTGAGAACGTCAAAGCCAAAATTCAAGATAAAGAAGGCATTCCTCCTGATCAA 4757
Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439
||| | | |||| || ||||||||||| ||||| | || || || ||||||
Sbjct 4756 CAACGTTTAATTTTCGCCGGCAAACAATTGGAAGACGGTCGTACCCTGTCTGACTACAAC 4697
Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468
|| ||||| ||||||||||| ||||| ||
Sbjct 4696 ATTCAAAAGGAATCTACACTCCATTTGGT 4668
Score = 98.7 bits (108), Expect = 8e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319
||||| |||||||| ||||| | ||||||||||| || || ||||| |||||
Sbjct 4192 ATGCAGATTTTTGTAAAAACCCTCACTGGCAAGACGATCACTTTGGAAGTCGAACCATCA 4133
Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379
|| | ||| | || || ||||| ||||| |||||| | || ||||||
Sbjct 4132 GACACCATTGAGAACGTCAAGGCTAAAATCCAAGACAAGGAAGGCATTCCTCCCGATCAA 4073
Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439
||| | | |||| ||| ||||| || ||||||||| | ||| || ||| ||||||
Sbjct 4072 CAACGTTTGATTTTTGCCGGCAAGCAGTTAGAAGATGGTCGCACTTTGTCCGACTACAAC 4013
Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468
|| || ||||||||||| || ||| ||||
Sbjct 4012 ATCCAGAAAGAATCTACTCTTCATCTAGT 3984
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 402032312246432
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |