Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq46955 125 1e-22
seq5580 122 1e-21
seq7268 100 4e-15
>seq46955
Length=3063
Score = 125 bits (138), Expect = 1e-22
Identities = 170/234 (73%), Gaps = 10/234 (4%)
Strand=Plus/Plus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|| ||||||||||||||||| || |||||| || | || | |||| |||| ||
Sbjct 1928 ATTTACAAGGTGCTCAAGCAAGTCCACCCCGACACTG----GCGTT--TCCAGCAAGGCC 1981
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||| || |||||| |||||||||||||| | || ||||||| | | || || ||
Sbjct 1982 ATGAGCATTATGAACAGCTTTGTCAACGACATCTTTGAGCGCATCGCCGCGGAAGC--GT 2039
Query 725031 CGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088
||| |||| | || |||||||||| || ||| || || || |||||||| || |
Sbjct 2040 CGCGTTTGGCCCACTACAACAAGCGCTCGACCATCACCAGTCGGGAAATCCAGACGGCTG 2099
Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
| || ||| || ||| |||||| |||||| |||||||||| || |||||||
Sbjct 2100 TTCGTCTGCTCTTGCCCGGCGAGTTGGCCAAGCACGCCGTCAGTGAAGGCACCA 2153
>seq5580
Length=7482
Score = 122 bits (134), Expect = 1e-21
Identities = 270/403 (67%), Gaps = 18/403 (4%)
Strand=Plus/Minus
Query 1455882 CATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAA 1455941
|| ||| ||| ||||| | || || ||| |||||| |||||||| || || ||
Sbjct 6071 CACTTCGTCAGCCACGTTTTGGCTTTCTTT-GCCGCCTCTGATGGCATTGTCAATGAAAA 6013
Query 1455942 CCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTT 1456001
| ||| | || ||| |||| || || | || || || || | || ||||| ||
Sbjct 6012 CTTGGTGGAGCGATTTGCCCAAGAAGTGCAGGTTCCCGAAGCGCGCTGTTTCTACGGCTT 5953
Query 1456002 CCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGT 1456061
|||||| ||||| |||||||| || || |||| || || || | |||||||| || |
Sbjct 5952 CCAGATTGCCATGGAAAACATTCATTCCGAAATGTATTCACTTTTAATCGACACTTATAT 5893
Query 1456062 CAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAG 1456121
| || | ||||| | || || || || ||||| || | || | || |
Sbjct 5892 CCGATCTCCTGATGAGAAACAGATGCTGTTCCGAGCTATCGAAACCCTTCCTTGTGTAAA 5833
Query 1456122 GAAAAAGGCCGACTGGGCGATGAAGTGGATC------AACA-AGGAGGGCCTCGACACTT 1456174
||| |||||||| ||||| | || |||||| |||| || ||| ||
Sbjct 5832 GAAGAAGGCCGATTGGGCCTTTAAATGGATCTCTGACAACACAGCAGGT---------TT 5782
Query 1456175 TGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTG 1456233
||| ||||| || ||| |||||| || |||||||| || |||||||| ||| |||
Sbjct 5781 TGCTGAGCGAGTCATCGCCTTTGCAGCCGTCGAGGGTATTTTTTTCTCTGGCTCTTTTGC 5722
Query 1456234 CGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTT 1456276
| |||| || ||||| |||||| | || | ||||||||||||
Sbjct 5721 CTCCATTTTCTGGCTGAAGAAGAGAGGTTTGATGCCCGGTCTT 5679
>seq7268
Length=13466
Score = 100 bits (110), Expect = 4e-15
Identities = 160/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|||||||| ||||| || || || || ||| |||| || |||| ||| ||
Sbjct 10483 ATCTACAAAGTGCTTAAACAAGTTCATCCCGACACCGGTGTT------TCCAGTAAGGCC 10430
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||| ||||||||| |||||||||||||| |||| ||||| | | |||| || |
Sbjct 10429 ATGAGCATCATGAACAGCTTTGTCAACGACATTTTCGAGCGCATTGCCGCCGAAGCTTCT 10370
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
|| ||||| | || ||| ||||| ||| || || || || || |||||||| ||
Sbjct 10369 CGTCTGGCCCACTACAATAAGCGTTCCACCATAACCAGTCGAGAAATTCAGACCGCTGTT 10310
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140
|| ||| || ||| || ||| |||||| ||||| || ||| |||||
Sbjct 10309 CGTCTGCTCTTGCCTGGTGAATTGGCCAAACACGCAGTGAGCGAAGGCAC 10260
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7171963421513898
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |