Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq46955 125 1e-22 seq5580 122 1e-21 seq7268 100 4e-15 >seq46955 Length=3063 Score = 125 bits (138), Expect = 1e-22 Identities = 170/234 (73%), Gaps = 10/234 (4%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || ||||||||||||||||| || |||||| || | || | |||| |||| || Sbjct 1928 ATTTACAAGGTGCTCAAGCAAGTCCACCCCGACACTG----GCGTT--TCCAGCAAGGCC 1981 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| || |||||| |||||||||||||| | || ||||||| | | || || || Sbjct 1982 ATGAGCATTATGAACAGCTTTGTCAACGACATCTTTGAGCGCATCGCCGCGGAAGC--GT 2039 Query 725031 CGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 ||| |||| | || |||||||||| || ||| || || || |||||||| || | Sbjct 2040 CGCGTTTGGCCCACTACAACAAGCGCTCGACCATCACCAGTCGGGAAATCCAGACGGCTG 2099 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || ||| || ||| |||||| |||||| |||||||||| || ||||||| Sbjct 2100 TTCGTCTGCTCTTGCCCGGCGAGTTGGCCAAGCACGCCGTCAGTGAAGGCACCA 2153 >seq5580 Length=7482 Score = 122 bits (134), Expect = 1e-21 Identities = 270/403 (67%), Gaps = 18/403 (4%) Strand=Plus/Minus Query 1455882 CATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAA 1455941 || ||| ||| ||||| | || || ||| |||||| |||||||| || || || Sbjct 6071 CACTTCGTCAGCCACGTTTTGGCTTTCTTT-GCCGCCTCTGATGGCATTGTCAATGAAAA 6013 Query 1455942 CCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTT 1456001 | ||| | || ||| |||| || || | || || || || | || ||||| || Sbjct 6012 CTTGGTGGAGCGATTTGCCCAAGAAGTGCAGGTTCCCGAAGCGCGCTGTTTCTACGGCTT 5953 Query 1456002 CCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGT 1456061 |||||| ||||| |||||||| || || |||| || || || | |||||||| || | Sbjct 5952 CCAGATTGCCATGGAAAACATTCATTCCGAAATGTATTCACTTTTAATCGACACTTATAT 5893 Query 1456062 CAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAG 1456121 | || | ||||| | || || || || ||||| || | || | || | Sbjct 5892 CCGATCTCCTGATGAGAAACAGATGCTGTTCCGAGCTATCGAAACCCTTCCTTGTGTAAA 5833 Query 1456122 GAAAAAGGCCGACTGGGCGATGAAGTGGATC------AACA-AGGAGGGCCTCGACACTT 1456174 ||| |||||||| ||||| | || |||||| |||| || ||| || Sbjct 5832 GAAGAAGGCCGATTGGGCCTTTAAATGGATCTCTGACAACACAGCAGGT---------TT 5782 Query 1456175 TGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTG 1456233 ||| ||||| || ||| |||||| || |||||||| || |||||||| ||| ||| Sbjct 5781 TGCTGAGCGAGTCATCGCCTTTGCAGCCGTCGAGGGTATTTTTTTCTCTGGCTCTTTTGC 5722 Query 1456234 CGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTT 1456276 | |||| || ||||| |||||| | || | |||||||||||| Sbjct 5721 CTCCATTTTCTGGCTGAAGAAGAGAGGTTTGATGCCCGGTCTT 5679 >seq7268 Length=13466 Score = 100 bits (110), Expect = 4e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||| ||||| || || || || ||| |||| || |||| ||| || Sbjct 10483 ATCTACAAAGTGCTTAAACAAGTTCATCCCGACACCGGTGTT------TCCAGTAAGGCC 10430 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| |||||||||||||| |||| ||||| | | |||| || | Sbjct 10429 ATGAGCATCATGAACAGCTTTGTCAACGACATTTTCGAGCGCATTGCCGCCGAAGCTTCT 10370 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||| | || ||| ||||| ||| || || || || || |||||||| || Sbjct 10369 CGTCTGGCCCACTACAATAAGCGTTCCACCATAACCAGTCGAGAAATTCAGACCGCTGTT 10310 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || ||| || ||| || ||| |||||| ||||| || ||| ||||| Sbjct 10309 CGTCTGCTCTTGCCTGGTGAATTGGCCAAACACGCAGTGAGCGAAGGCAC 10260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7171963421513898