Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_026611.1 Length=43129 Score E Sequences producing significant alignments: (Bits) Value seq4723 215 1e-51 >seq4723 Length=43540 Score = 215 bits (238), Expect = 1e-51 Identities = 349/498 (70%), Gaps = 7/498 (1%) Strand=Plus/Minus Query 42056 TATGTCGCTCTATCCTATGGGT-GTGGGCGGGAGGGGGCCATCGGGCCCGGCTGGTAGTG 42114 ||||||||| ||||| | ||| ||| || || ||||| |||||||| | || || Sbjct 30789 TATGTCGCTTTATCCATTTGGTAGTGTGCCGG----GGCCAGCGGGCCCGCCGGG-AGCA 30735 Query 42115 GTAGC-GTACGGCGCAAATCGGAGTGTTACTTCTCTGGGTTAAACCTGGTGATTCCCACC 42173 | ||| | | ||||| ||||| |||||| || |||| |||||| ||||| ||| Sbjct 30734 TCATTAGTAAGACAGAAATCAGAGTGCTACTTCAGCGGATTAAGCCTGGTAATTCCAACC 30675 Query 42174 ACGCCAACAAACCTGATCAGCCTGATTAAGAGCCTACCCCATAGTGGCTCGTTATCCCCG 42233 |||||||| || ||||| | ||||||||| | ||| | || | ||||| | | ||| Sbjct 30674 ACGCCAACCAATCTGATTAACCTGATTAAAAACCTGACGCACACCGGCTCCCTTGCTCCG 30615 Query 42234 TTCTTCAACACGACGATCAACAAGTTCAAGGCATTCAATAACGATTCTACTGTGACCTTC 42293 ||||||||||| |||| ||||||| | || | ||||| | | | || || || ||| Sbjct 30614 TTCTTCAACACCACGACCAACAAGCTGAACGTTTTCAACCAGAACACAACGGTAACGTTC 30555 Query 42294 AAGGTTAACGTGGTCGGCTCCTGGGCTGGCTCATCCTCGCAGCGCAGCATGACGGTATCT 42353 || |||||||| ||||| | ||| |||| | || || | || |||||| |||| Sbjct 30554 AAAGTTAACGTAATCGGCACATGGTCTGGTGCTTCAACGAACCGAAGCATGTCGGTCGAC 30495 Query 42354 TTCCCGTCTACTCAGGGCAACACCCTGGTTGAATCGCGCGATCAGGCGGTAACGGCTGAC 42413 || ||| ||| | || ||| | ||| || | || ||| ||| ||| | ||| Sbjct 30494 TTTCCGCAGACTAACGGTAACTCGCTGACCAAAACACGAGATGCCCAGGTCACGACAGAC 30435 Query 42414 ATCCTATCGTTCCCGACGTTCTTTAGCGTGGACGCTGGCGGGAACCTGGCACTAAACGGT 42473 ||||| || |||||||| ||||| ||||| || | |||||| |||||| | |||| Sbjct 30434 ATCCTTTCTTTCCCGACATTCTTCAGCGTCGATAAGGACGGGAATCTGGCAACCAGCGGT 30375 Query 42474 AGCGACATCACTATCCAGTCCAATGGGGCGGCATTCACTGCCTCAGCAATCCTGATCATC 42533 || |||||||| ||| || || || ||| | || || || |||| || || | | Sbjct 30374 AGTGACATCACCATCGTATCGAACGGAGCGACGTTTACCGCAACAGCGATTCTCCTTGTT 30315 Query 42534 GCCGAGCAGATGGTCCCG 42551 || ||||||||||||||| Sbjct 30314 GCTGAGCAGATGGTCCCG 30297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137791922558918