Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq6222 150 2e-31 seq7813 98.7 1e-15 >seq6222 Length=12937 Score = 150 bits (166), Expect = 2e-31 Identities = 160/206 (78%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCT 134568 ||| || |||||||| ||||| ||||||||||| | ||| ||| | ||| || | | Sbjct 4901 GTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCAGACAA-GGTACGGCCGTCTTCCAATT 4959 Query 134569 GTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTT 134628 ||||||| || ||||||||||| || |||||||| || ||||||||||| ||||| |||| Sbjct 4960 GTTTGCCAGCGAAAATCAAACGTTGTTGATCGGGAGGAATGCCTTCTTTGTCTTGGATTT 5019 Query 134629 TTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCG 134687 | |||| || | |||| |||||||||| || || || | |||||||| || || Sbjct 5020 TAGCCTTGA-CGTTTTCAATGGTGTCGGACGGCTCAACTTCCAAGGTAATGGTCTTGCCA 5078 Query 134688 GTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||| |||||||||||||| Sbjct 5079 GTCAAGGTTTTGACGAAAATTTGCAT 5104 Score = 145 bits (160), Expect = 8e-30 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || || ||||||||||||||||||||||| | ||| || ||| || | ||| Sbjct 4674 TGGAGTGTAGATTCCTTTTGAATGTTGTAGTCAGACAGGGTACGACCGTCTTCCAATTGT 4733 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 ||||| || ||||| ||||| || ||||| || || ||||||||||| ||||||||||| Sbjct 4734 TTGCCGGCGAAAATTAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCTTGAATTTTG 4793 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 |||||| || | |||||||| | ||| || || | ||| || || || || || Sbjct 4794 GCTTTGACGTTCTCAATAGTGTCGGAAGGTTCGACTTCCAAAGTGATCGTCTTTCCCGTG 4853 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 | |||||| |||||||||||||| Sbjct 4854 AGAGTTTTGACGAAAATTTGCAT 4876 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 || || || | ||| ||||| || | || || || |||||||| || || || |||||| Sbjct 3735 TTGCCGCCACGGAGACGCAAGACCAAATGGAGAGTTGATTCCTTCTGGATATTATAGTCG 3794 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | ||| || || || | || || || || || |||||||| ||||||||||| Sbjct 3795 GACAAGGTACGACCATCTTCCAATTGCTTACCGGCGAAGATCAAACGTTGCTGATCGGGA 3854 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTC 134662 || || ||||| || ||||||||||| ||||| || | |||| |||||||||| ||| Sbjct 3855 GGAATACCTTCCTTGTCTTGAATTTTGGCTTTGA-CGTTTTCAATGGTGTCGGACGGTTC 3913 Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | || |||||||| || || || ||||| ||||| |||||||| Sbjct 3914 AACTTCCAAGGTGATGGTTTTGCCCGTCAAGGTTTTCACGAAGATTTGCAT 3964 Score = 129 bits (142), Expect = 6e-25 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || |||||||| ||||| || ||||| || | ||| || ||| || | ||| Sbjct 4217 GTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGATAAGGTACGACCGTCTTCCAACTG 4276 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 |||||| || || || || || || |||||||| || ||||||||||| ||||| ||||| Sbjct 4277 TTTGCCAGCGAAGATTAATCGTTGTTGATCGGGGGGAATGCCTTCTTTGTCTTGGATTTT 4336 Query 134630 TTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGG 134688 ||||| || | |||| ||||| || | || || || | ||| |||||||| |||| Sbjct 4337 GGCTTTGA-CGTTTTCAATGGTGTCAGAGGGCTCGACTTCCAAAGTGATGGTTTTGCCGG 4395 Query 134689 TTAAAGTTTTAACGAAAATTTGCAT 134713 | | ||| || |||||||| ||||| Sbjct 4396 TAAGAGTCTTCACGAAAATCTGCAT 4420 Score = 125 bits (138), Expect = 7e-24 Identities = 161/217 (74%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGA 134557 |||| || | ||| || |||||||| ||||| || ||||| || | ||| ||| || Sbjct 4434 CGCAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGACAA-GGTACGACC 4492 Query 134558 GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTT 134617 ||| || || || ||||| || || || | ||| || || || || || ||||||||||| Sbjct 4493 GTCTTCCAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGGAATGCCTTCTTT 4552 Query 134618 TTCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGTAA 134676 ||||| || || ||||| || | |||| ||||| |||| || || || | ||| | Sbjct 4553 GTCTTGGATCTTGGCTTTGA-CGTTTTCAATGGTGTCAGACGGCTCAACTTCCAAAGTGA 4611 Query 134677 TGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||||| ||||| ||||| || ||||| |||||||| Sbjct 4612 TGGTTTTGCCGGTCAAAGTCTTCACGAAGATTTGCAT 4648 Score = 123 bits (136), Expect = 3e-23 Identities = 169/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || || | ||| ||||| || | || || |||||||| || ||||||||||| || | | Sbjct 5106 CCACCACGGAGACGCAATACCAAATGCAGGGTGGATTCTTTCTGAATGTTGTAATCTGAC 5165 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 |||| | || || || | || ||||| || ||||| ||||| ||||| || || || Sbjct 5166 AACG-TACGACCATCTTCCAATTGCTTGCCAGCGAAAATTAAACGTTGCTGGTCAGGGGG 5224 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCA 134664 || |||||||| ||||||||||| ||||| || | |||| || || || | || | Sbjct 5225 GATACCTTCTTTGTCTTGAATTTTGGCTTTGA-CGTTTTCAATGGTATCCGAAGGCTCTA 5283 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTT 134715 | ||||| ||||| || || || || | || || ||||| |||||||||| Sbjct 5284 CTTCGAGGGTAATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCATTT 5334 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| || || || || || ||||| || || |||||||||||| | ||| || Sbjct 3975 AGACGCAGGACTAGATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCGGACAAAGTGCGA 4034 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | ||| ||||| |||||||||||||| || |||||||| || |||||||| Sbjct 4035 CCATCTTCTAACTGCTTGCCGGCAAAAATCAAACGTTGTTGATCGGGAGGAATGCCTTCC 4094 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| ||||| ||||| || | ||||| || | ||| || || | ||| Sbjct 4095 TTGTCTTGGATTTTAGCCTTGACGTTCTCAATGGTGTCTGATGGTTCGACTTCCAAAGTG 4154 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || | ||||| || ||||| ||||| Sbjct 4155 ATCGTCTTGCCAGTGAGGGTTTTTACAAAAATCTGCAT 4192 >seq7813 Length=5936 Score = 98.7 bits (108), Expect = 1e-15 Identities = 171/249 (69%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 8755 ATATTGCAATACGACATGTGGAATGTCACGCCCACCTCTTTGTGGAATTGGAGCGATTTG 8814 || ||||| ||||| ||||||||||| || || | | | ||| | ||||||| || Sbjct 1390 ATCTTGCAGTACGATATGTGGAATGTGACTCCAAGTGATCTTTGGGACTGGAGCGCACTG 1331 Query 8815 AAACGCAAAATTGCTCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACC 8874 ||| |||||||| || ||| | || |||||| | ||| | ||| |||||| || Sbjct 1330 AAAGCTAAAATTGCCAAACACGGAGTCCGTAATTCGTTATTGTTAGCTCCCATGCCTACT 1271 Query 8875 GCCACGACTGCTCAAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTG 8934 || | || || ||||| |||| ||||| || || |||| | | || |||| | Sbjct 1270 GCTTCTACGGCACAAATTTTGGGGAACAATGAGTCTATTGAAGCCTATACGTCCAACATT 1211 Query 8935 TACGTGAGACGAGTGTTGGCCGGCGATTTTTTAATGCTGAATCGTCATTTGATGCGCGAC 8994 || | ||||||| ||| | ||||| ||| | | | |||| |||||| |||| || Sbjct 1210 TATTCGCGACGAGTCTTGTCTGGCGAATTTCAAGTTGTCAATCACCATTTGTTGCGGGAT 1151 Query 8995 TTGATCGAA 9003 |||| |||| Sbjct 1150 TTGACCGAA 1142 Score = 89.7 bits (98), Expect = 5e-13 Identities = 179/264 (68%), Gaps = 6/264 (2%) Strand=Plus/Minus Query 9057 CGTTCAGAACATTGACGCGGTGCCTCAACACATTAAAGAGCTGTATAAAACCGTTTGGGA 9116 |||| ||||||| || | | ||| | |||| |||| |||||| |||||||| ||||| Sbjct 955 CGTTTAGAACATCGATGGTATCCCTGACGACATCAAAGCGCTGTACAAAACCGTATGGGA 896 Query 9117 AATGAAGCAAAGCACGCTGATCGGCATGGCTGCGGATAGAGGCGCTTTTATTGATCAGAG 9176 || ||| | | | ||| ||| | || || ||||| || || ||||| || || Sbjct 895 GATTTCCCAACGGATAGTCATCAAAATGTCGGCCGACAGAGGAGCATTCATTGACCAAAG 836 Query 9177 TCAATCTTTTAACGTGTTCGTAGCCGCACCAACTTACGCT---TTGATGTCCAGCATTCA 9233 || || ||||||| | |||| | || | ||| | || | ||||| | || Sbjct 835 CCAGTCACTTAACGTTCACATAGCAGAGCCCAATTATGGCAAATTAACGTCCA---TGCA 779 Query 9234 TTATTTAACTTGGAAAATGGGTTTAAAAACAGGCATGTACTATTTGCGCACAAAACCCGC 9293 || || | ||||| | || || ||||| ||||||||||| | ||||| |||||||| Sbjct 778 TTTCTTCTCGTGGAAGCTAGGCTTGAAAACTGGCATGTACTACCTTCGCACCAAACCCGC 719 Query 9294 CGCTGAACCTATCAAATTTACAGT 9317 || | | || ||||| ||||| Sbjct 718 GGCATCAGCGATTAAATTCACAGT 695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505015377505080