Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq5580 221 2e-52 seq7813 123 3e-23 >seq5580 Length=7482 Score = 221 bits (244), Expect = 2e-52 Identities = 519/783 (66%), Gaps = 3/783 (0%) Strand=Plus/Plus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 ||| || || | ||||||||||| || || ||||| || ||||| || |||||||| Sbjct 5319 CATCACGCCGCTCTTTTGGTATTCGCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTC 5378 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCC 39432 || || || |||||||| || || || || || | ||| || | || | || Sbjct 5379 TAAGGAAATGTTTTCCATAAAGTCGAAAGGGTTTTCGGAATTGTAAATCTTGGGACATTG 5438 Query 39433 TAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATT 39492 | ||| | | | ||||| || || || ||||| |||||||| ||||| || Sbjct 5439 AAGTTCGACCAAGAGCCGGTCTGCGACGAACTCAATGTACTGTTTCATCAAATCACAGTT 5498 Query 39493 CATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGC 39552 ||| || | | || |||| ||| || || | || |||| || || | || || Sbjct 5499 CATGCCAAGCATGGCTACCGGTAAAGCATCGGTCAAGAATTCTTGCTCTATAACCACAGC 5558 Query 39553 CTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACAT 39612 || || || || || | | | ||| | | |||||||| |||| Sbjct 5559 ATCGCGGATGATTTGCGTAACGCGAGCGACGCCGGGTTTGTTGACCAAATGTTTGTACAT 5618 Query 39613 TAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGT 39672 | ||| || || || ||||| | ||||| || | ||| | ||||| ||||| || Sbjct 5619 AAGGCAAGCAAAATCGCAATGCAAACCCTCGTCACGCGAAATGAGCTCGTTGGAAAAAGT 5678 Query 39673 GAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAA 39732 || || ||||| | ||| | ||| || ||||| || |||| |||||||| ||||| || Sbjct 5679 AAGACCGGGCATCAAACCTCTCTTCTTCAGCCAGAAAATGGAGGCAAAAGAGCCAGAGAA 5738 Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG---TATCATT 39789 || || || || || |||||||| || | | || ||| | ||| || | | | Sbjct 5739 AAAAATACCCTCGACGGCTGCAAAGGCGATGACTCGCTCAGCAAAACCTGCTGTGTTGTC 5798 Query 39790 ATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGC 39849 | ||||| || |||||||| || ||||||||||||||||| | ||||| ||||| Sbjct 5799 AGAGATCCATTTAAAGGCCCAATCGGCCTTCTTCTTTACACAAGGAAGGGTTTCGATAGC 5858 Query 39850 ATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATA 39909 || || ||||| |||||| | | | ||| || || ||||| || ||| Sbjct 5859 TCGGAACAGCATCTGTTTCTCATCAGGAGATCGGATATAAGTGTCGATTAAAAGTGAATA 5918 Query 39910 CATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 39969 |||||| ||||| |||||||| || || ||||| || ||||| ||||| | ||||| | Sbjct 5919 CATTTCGGAATGAATGTTTTCCATGGCAATCTGGAAGCCGTAGAAACAGCGCGCTTCGGG 5978 Query 39970 AATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGC 40029 || || || ||| ||||| ||| |||| |||||||| || || |||||| || Sbjct 5979 AACCTGCACTTCTTGGGCAAATCGCTCCACCAAGTTTTCATTGACAATGCCATCAGAGGC 6038 Query 40030 GGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCA 40089 |||||| || ||||| || || | | || | |||||||| ||| | || || | ||| Sbjct 6039 GGCAAAGAAAGCCAAAACGTGGCTGACGAAGTGCTTTTCATCAGGTTTTAACTTTTCCCA 6098 Query 40090 GTC 40092 || Sbjct 6099 ATC 6101 >seq7813 Length=5936 Score = 123 bits (136), Expect = 3e-23 Identities = 386/592 (65%), Gaps = 27/592 (5%) Strand=Plus/Plus Query 69152 CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTT 69211 |||| |||| || ||| | || || || || || || || | ||| | || |||| Sbjct 1748 CTTCGGGAACTGGGTAAAAGTTGATGTCAATGATCTTGTTCAAATTCCCTGTGACGACTT 1807 Query 69212 TAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTC----CATCTATAACAAACATATTC 69267 | || || || || |||| ||| ||| | |||| | ||| | || ||||||||| Sbjct 1808 TGGTGACTTCTTTGAGCTTGACAAAGTCATA-CGTCTTATCTTCTTTCACGAACATATTC 1866 Query 69268 AGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATC 69327 || || | ||||| | ||| || || |||| || | | | | ||||| | || Sbjct 1867 AGAGCAATGGATGCCAAATTGCAGACAGCTATTTCGTCCGGAGAGGAATATTCGACAATT 1926 Query 69328 TCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTA 69387 || ||||| ||||| |||||||| || ||||| |||||||||||| ||| |||| Sbjct 1927 TCCGTACACAGATTCGAGCATTTGATGGTTCCCAGGTTTTGCTGATTAGATTTTCGGTTA 1986 Query 69388 CAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGAT 69447 ||||| |||||||| || || | || || || ||||| | || || || ||||||| Sbjct 1987 CAGGCATCCTTGTAGAGGATGTAAGGCGTGCCCGTTTCCACTTGGGAGTCAATAATAGCC 2046 Query 69448 TTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGC-----TT----CTCTTTTTCA 69498 ||||| | || | ||| |||| |||| || ||| ||| Sbjct 2047 GACCAAA-----GTTGC--TGGGCACGAACTTG--ACGCCGATATTTGCCCTCGGATTCG 2097 Query 69499 TATTG--TGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATT 69556 || || ||||| ||| ||| |||| |||||||| | |||| ||| || || |||| Sbjct 2098 TACTGACGGTATAAAGC--TTCAAATTTCTCTCCCCATAGGTCATGCAAGCCCGGGCATT 2155 Query 69557 CATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGG 69616 | || |||||||| ||||| || | | | ||| || |||||| || | Sbjct 2156 CTGCAGGGCACATCAAACTCCACATTTCGTTCTTTTCAACGCGGCGCATAAACTCGTCAG 2215 Query 69617 GAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttt 69676 | ||||| || || ||| | ||| | | || | |||||| || || || || || | Sbjct 2216 GCATCCACAGTGCGTAAAATAAATCACGCGCCCTTTGTTCTTCTTTACCAGTGTTCTTCT 2275 Query 69677 tAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 69728 | ||||| || || || | || |||| ||||| ||||| | ||| || || Sbjct 2276 TGAGATCAAGGAATTCGAAAACGTCAGCGTGCCACGGTTCCAAATAAATAGC 2327 Score = 123 bits (136), Expect = 3e-23 Identities = 114/142 (80%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||| | ||||||||||||||||| || ||||| |||||||||||||| || || |||||| Sbjct 3054 GTTGCAGCATTAAATAATGTAGGTGACGCGTGTGTGAACCATTTTTCTGACAGTAGATTG 3113 Query 70051 TATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAA 70109 || ||||| || ||||| || ||||| | | | ||||| || | | ||| | |||||| Sbjct 3114 TAAGTTTCGATCGCTGAATCGATATCTTCGCCG-TGAATGCCAACTGAGACTCTCATCAA 3172 Query 70110 CATATGCTGAGGTCGTTCTACC 70131 ||||||||| || ||||| ||| Sbjct 3173 CATATGCTGCGGACGTTCAACC 3194 Score = 107 bits (118), Expect = 3e-18 Identities = 187/272 (69%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 68653 TTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTA 68712 ||||| || || ||| ||| | || || || || ||| | | | | ||| |||| Sbjct 1113 TTCTTCATATCCTCAGACCAGAGATTCCTTTCGGTCAAATCCCGCAACAAATGGTGATTG 1172 Query 68713 ACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 68772 || | ||||||||| ||||| || |||| || | ||||| || ||||| | ||| Sbjct 1173 ACAACTTGAAATTCGCCAGACAAGACTCGTCGCGAATAAATGTTGGACGTATAGGCTTCA 1232 Query 68773 ACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAAT 68832 | ||| ||||| || |||| |||||| || || || ||||| ||||| || || | |||| Sbjct 1233 ATAGACTCATTGTTCCCCAAAATTTGTGCCGTAGAAGCAGTAGGCATGGGAGCTAACAAT 1292 Query 68833 AAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGA 68892 || ||| | | || ||| | |||||| |||| || |||| ||||||||| Sbjct 1293 AACGAATTACGGACTCCGTGTTTGGCAATTTTAGCTTTCAGTGCGCTCCAGTCCCAAAGA 1352 Query 68893 TCAGATGGTACAACATTCCAAAGATCGTATTG 68924 ||| ||| |||||||| | |||||| || Sbjct 1353 TCACTTGGAGTCACATTCCACATATCGTACTG 1384 Score = 100 bits (110), Expect = 4e-16 Identities = 133/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006 ||||| | ||||||| |||||| ||||||| ||| |||| ||||||| ||||| || Sbjct 1462 GATCCTTCATATGTTGAATAAGGCCCTTCCTTTTCTGCTAATTCACAAGAAGCCTCCAAA 1521 Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTA-TC 69065 || |||||||| | ||||||||||||| | || || ||| ||||| || | || Sbjct 1522 GCTCCGTAATACAAAGTTTCGAAAATCTGGATGTTCAGTGTTTGAGCTTC-AGCGGATTC 1580 Query 69066 GAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGG 69125 || ||||| | | | |||||| || ||||| || || || || || || ||||| || Sbjct 1581 AAAGGGATATCGCATTAAAATAAAAGCGTCTGCTAAGCCTTGGACGCCGATTCCGATCGG 1640 Query 69126 TC 69127 || Sbjct 1641 TC 1642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686388217579560