Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq5580 221 2e-52
seq7813 123 3e-23
>seq5580
Length=7482
Score = 221 bits (244), Expect = 2e-52
Identities = 519/783 (66%), Gaps = 3/783 (0%)
Strand=Plus/Plus
Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372
||| || || | ||||||||||| || || ||||| || ||||| || ||||||||
Sbjct 5319 CATCACGCCGCTCTTTTGGTATTCGCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTC 5378
Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCC 39432
|| || || |||||||| || || || || || | ||| || | || | ||
Sbjct 5379 TAAGGAAATGTTTTCCATAAAGTCGAAAGGGTTTTCGGAATTGTAAATCTTGGGACATTG 5438
Query 39433 TAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATT 39492
| ||| | | | ||||| || || || ||||| |||||||| ||||| ||
Sbjct 5439 AAGTTCGACCAAGAGCCGGTCTGCGACGAACTCAATGTACTGTTTCATCAAATCACAGTT 5498
Query 39493 CATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGC 39552
||| || | | || |||| ||| || || | || |||| || || | || ||
Sbjct 5499 CATGCCAAGCATGGCTACCGGTAAAGCATCGGTCAAGAATTCTTGCTCTATAACCACAGC 5558
Query 39553 CTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACAT 39612
|| || || || || | | | ||| | | |||||||| ||||
Sbjct 5559 ATCGCGGATGATTTGCGTAACGCGAGCGACGCCGGGTTTGTTGACCAAATGTTTGTACAT 5618
Query 39613 TAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGT 39672
| ||| || || || ||||| | ||||| || | ||| | ||||| ||||| ||
Sbjct 5619 AAGGCAAGCAAAATCGCAATGCAAACCCTCGTCACGCGAAATGAGCTCGTTGGAAAAAGT 5678
Query 39673 GAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAA 39732
|| || ||||| | ||| | ||| || ||||| || |||| |||||||| ||||| ||
Sbjct 5679 AAGACCGGGCATCAAACCTCTCTTCTTCAGCCAGAAAATGGAGGCAAAAGAGCCAGAGAA 5738
Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG---TATCATT 39789
|| || || || || |||||||| || | | || ||| | ||| || | | |
Sbjct 5739 AAAAATACCCTCGACGGCTGCAAAGGCGATGACTCGCTCAGCAAAACCTGCTGTGTTGTC 5798
Query 39790 ATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGC 39849
| ||||| || |||||||| || ||||||||||||||||| | ||||| |||||
Sbjct 5799 AGAGATCCATTTAAAGGCCCAATCGGCCTTCTTCTTTACACAAGGAAGGGTTTCGATAGC 5858
Query 39850 ATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATA 39909
|| || ||||| |||||| | | | ||| || || ||||| || |||
Sbjct 5859 TCGGAACAGCATCTGTTTCTCATCAGGAGATCGGATATAAGTGTCGATTAAAAGTGAATA 5918
Query 39910 CATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 39969
|||||| ||||| |||||||| || || ||||| || ||||| ||||| | ||||| |
Sbjct 5919 CATTTCGGAATGAATGTTTTCCATGGCAATCTGGAAGCCGTAGAAACAGCGCGCTTCGGG 5978
Query 39970 AATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGC 40029
|| || || ||| ||||| ||| |||| |||||||| || || |||||| ||
Sbjct 5979 AACCTGCACTTCTTGGGCAAATCGCTCCACCAAGTTTTCATTGACAATGCCATCAGAGGC 6038
Query 40030 GGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCA 40089
|||||| || ||||| || || | | || | |||||||| ||| | || || | |||
Sbjct 6039 GGCAAAGAAAGCCAAAACGTGGCTGACGAAGTGCTTTTCATCAGGTTTTAACTTTTCCCA 6098
Query 40090 GTC 40092
||
Sbjct 6099 ATC 6101
>seq7813
Length=5936
Score = 123 bits (136), Expect = 3e-23
Identities = 386/592 (65%), Gaps = 27/592 (5%)
Strand=Plus/Plus
Query 69152 CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTT 69211
|||| |||| || ||| | || || || || || || || | ||| | || ||||
Sbjct 1748 CTTCGGGAACTGGGTAAAAGTTGATGTCAATGATCTTGTTCAAATTCCCTGTGACGACTT 1807
Query 69212 TAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTC----CATCTATAACAAACATATTC 69267
| || || || || |||| ||| ||| | |||| | ||| | || |||||||||
Sbjct 1808 TGGTGACTTCTTTGAGCTTGACAAAGTCATA-CGTCTTATCTTCTTTCACGAACATATTC 1866
Query 69268 AGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATC 69327
|| || | ||||| | ||| || || |||| || | | | | ||||| | ||
Sbjct 1867 AGAGCAATGGATGCCAAATTGCAGACAGCTATTTCGTCCGGAGAGGAATATTCGACAATT 1926
Query 69328 TCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTA 69387
|| ||||| ||||| |||||||| || ||||| |||||||||||| ||| ||||
Sbjct 1927 TCCGTACACAGATTCGAGCATTTGATGGTTCCCAGGTTTTGCTGATTAGATTTTCGGTTA 1986
Query 69388 CAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGAT 69447
||||| |||||||| || || | || || || ||||| | || || || |||||||
Sbjct 1987 CAGGCATCCTTGTAGAGGATGTAAGGCGTGCCCGTTTCCACTTGGGAGTCAATAATAGCC 2046
Query 69448 TTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGC-----TT----CTCTTTTTCA 69498
||||| | || | ||| |||| |||| || ||| |||
Sbjct 2047 GACCAAA-----GTTGC--TGGGCACGAACTTG--ACGCCGATATTTGCCCTCGGATTCG 2097
Query 69499 TATTG--TGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATT 69556
|| || ||||| ||| ||| |||| |||||||| | |||| ||| || || ||||
Sbjct 2098 TACTGACGGTATAAAGC--TTCAAATTTCTCTCCCCATAGGTCATGCAAGCCCGGGCATT 2155
Query 69557 CATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGG 69616
| || |||||||| ||||| || | | | ||| || |||||| || |
Sbjct 2156 CTGCAGGGCACATCAAACTCCACATTTCGTTCTTTTCAACGCGGCGCATAAACTCGTCAG 2215
Query 69617 GAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttt 69676
| ||||| || || ||| | ||| | | || | |||||| || || || || || |
Sbjct 2216 GCATCCACAGTGCGTAAAATAAATCACGCGCCCTTTGTTCTTCTTTACCAGTGTTCTTCT 2275
Query 69677 tAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 69728
| ||||| || || || | || |||| ||||| ||||| | ||| || ||
Sbjct 2276 TGAGATCAAGGAATTCGAAAACGTCAGCGTGCCACGGTTCCAAATAAATAGC 2327
Score = 123 bits (136), Expect = 3e-23
Identities = 114/142 (80%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050
||| | ||||||||||||||||| || ||||| |||||||||||||| || || ||||||
Sbjct 3054 GTTGCAGCATTAAATAATGTAGGTGACGCGTGTGTGAACCATTTTTCTGACAGTAGATTG 3113
Query 70051 TATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAA 70109
|| ||||| || ||||| || ||||| | | | ||||| || | | ||| | ||||||
Sbjct 3114 TAAGTTTCGATCGCTGAATCGATATCTTCGCCG-TGAATGCCAACTGAGACTCTCATCAA 3172
Query 70110 CATATGCTGAGGTCGTTCTACC 70131
||||||||| || ||||| |||
Sbjct 3173 CATATGCTGCGGACGTTCAACC 3194
Score = 107 bits (118), Expect = 3e-18
Identities = 187/272 (69%), Gaps = 0/272 (0%)
Strand=Plus/Plus
Query 68653 TTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTA 68712
||||| || || ||| ||| | || || || || ||| | | | | ||| ||||
Sbjct 1113 TTCTTCATATCCTCAGACCAGAGATTCCTTTCGGTCAAATCCCGCAACAAATGGTGATTG 1172
Query 68713 ACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 68772
|| | ||||||||| ||||| || |||| || | ||||| || ||||| | |||
Sbjct 1173 ACAACTTGAAATTCGCCAGACAAGACTCGTCGCGAATAAATGTTGGACGTATAGGCTTCA 1232
Query 68773 ACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAAT 68832
| ||| ||||| || |||| |||||| || || || ||||| ||||| || || | ||||
Sbjct 1233 ATAGACTCATTGTTCCCCAAAATTTGTGCCGTAGAAGCAGTAGGCATGGGAGCTAACAAT 1292
Query 68833 AAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGA 68892
|| ||| | | || ||| | |||||| |||| || |||| |||||||||
Sbjct 1293 AACGAATTACGGACTCCGTGTTTGGCAATTTTAGCTTTCAGTGCGCTCCAGTCCCAAAGA 1352
Query 68893 TCAGATGGTACAACATTCCAAAGATCGTATTG 68924
||| ||| |||||||| | |||||| ||
Sbjct 1353 TCACTTGGAGTCACATTCCACATATCGTACTG 1384
Score = 100 bits (110), Expect = 4e-16
Identities = 133/182 (73%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006
||||| | ||||||| |||||| ||||||| ||| |||| ||||||| ||||| ||
Sbjct 1462 GATCCTTCATATGTTGAATAAGGCCCTTCCTTTTCTGCTAATTCACAAGAAGCCTCCAAA 1521
Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTA-TC 69065
|| |||||||| | ||||||||||||| | || || ||| ||||| || | ||
Sbjct 1522 GCTCCGTAATACAAAGTTTCGAAAATCTGGATGTTCAGTGTTTGAGCTTC-AGCGGATTC 1580
Query 69066 GAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGG 69125
|| ||||| | | | |||||| || ||||| || || || || || || ||||| ||
Sbjct 1581 AAAGGGATATCGCATTAAAATAAAAGCGTCTGCTAAGCCTTGGACGCCGATTCCGATCGG 1640
Query 69126 TC 69127
||
Sbjct 1641 TC 1642
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686388217579560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |