Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_027339.1
Length=38389
Score E
Sequences producing significant alignments: (Bits) Value
seq4723 619 3e-173
seq9686 80.6 7e-11
>seq4723
Length=43540
Score = 619 bits (686), Expect = 3e-173
Identities = 682/911 (75%), Gaps = 15/911 (2%)
Strand=Plus/Minus
Query 24422 TTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTT 24481
||||| |||||| |||||| || || || |||||||| || ||||| ||||| || |
Sbjct 2286 TTCATTTCCATTGTTCCCCATATGTGAAGCCGATTTCAGCAAGCGCCTCATCCATCTTCT 2227
Query 24482 CGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGCTCAACCA 24541
||||||| ||||||||||||||||||||| |||||||| || || || || || ||||
Sbjct 2226 CGATGAATTCCGGCACCATCTCGTCAAAATCAGCCATGTATTTGTCGTCACGTTCGACCA 2167
Query 24542 CGACATAATGCAGGCCTTCACGCTTCATTCGTGGGTCATAGTTGGCAAAGTACCAGGCAT 24601
||||| || | |||||| || ||||| |||||||| || ||||||||| ||||||| |
Sbjct 2166 AGACATGGTGGATGCCTTCGCGTTTCATGCGTGGGTCGTAATTGGCAAAGAACCAGGCGT 2107
Query 24602 CTTTTCGCGTTACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTTATGGCCT 24661
|||| || | ||||||||||||||| |||||||||||||| || ||||| |||||||
Sbjct 2106 TCTTTCCGGTAATCCACATGCTGTACTGAACCTGGGCCATGTACGCGGACTTGATGGCCT 2047
Query 24662 CGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTTCAA 24721
| || || || |||| |||||||||||| || |||||||| || ||||| |||||||| |
Sbjct 2046 CAAAGCCGCCAAGCCTGAATTTCATGAAGTCGCGGGAGGTGAAAGGGCACTTCAGTTCGA 1987
Query 24722 GGCCGTTGCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATATTTTCGTCGC 24781
|||| | ||| |||||| | || || ||||||||||| ||||||||||| |||||||
Sbjct 1986 GGCCAAAGTCGTTACTGCACAGCCCGTCAGGAGAGCAGGCCGTGCGCATATTCTCGTCGC 1927
Query 24782 GATAGATGATCGGGGATTCAGTAACATTCACGCCGGAAGTGAATTCAAACAGGGTTCTGG 24841
| ||| |||||| || || | || | ||||||| ||||| || || ||||||| |
Sbjct 1926 GGAAGAGGATCGGCGACTCTATGACGGTAACGCCGGTCGTGAACTCGAAAAGGGTTCGCG 1867
Query 24842 CGTCGTTCTCGTACTGTTTTCCCCAGGCCAGCGCCTTAGCATTAACTTCCGGAGCCACAC 24901
|||| | ||| | ||||| ||||| ||||||| ||| || ||||||||||| | || |
Sbjct 1866 CGTCTTCTTCGAATTGTTTACCCCATGCCAGCGACTTGGCGTTAACTTCCGGCGATACGC 1807
Query 24902 CGGTGCAAACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCT 24961
||||||| || || |||||||||||||||||||| |||||||||||||| | ||||||||
Sbjct 1806 CGGTGCAGACTTCCGCCAGCAGGGTGTGGAAGTAAGACATTTTCATGTCCGTCCACTTCT 1747
Query 24962 TTCCTGAGCGGGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCC 25021
| || ||||| || || | || |||||| ||||| || || || || |||||||| |
Sbjct 1746 TCCCGGAGCGAGGTTTGGAAATTACGTTGCTGACTTCAGATGCCGTAATTACGCCGAGGC 1687
Query 25022 GTAATTTGTGCCATGCATCATCCCCCTGTTCGACAGCTCTCACGTCGATCCCGGTACGCT 25081
| | | ||||| || ||||| || || ||||| | | | ||||| || || || ||
Sbjct 1686 GCAGCCTTTGCCACGCTTCATCGCCTTGCTCGACCGTTGTTACGTCAATGCCCGTCCGGG 1627
Query 25082 GCAGGATAATGTCCGGTGTCATGCTGCCACCTTCTGCTCAGTGGCTTTCTGTTTCAGGAA 25141
||||||||| || ||||||||||||| ||| ||||| || |||||
Sbjct 1626 CCAGGATAATTTCAGGTGTCATGCTGC---------------GGCCTTCTGCTTAAGGAA 1582
Query 25142 TCCAAGAGCTTTCACTGCTTCGGCCTGTGTCAGTTCTGACGATGCGCGAATGTCGCGGCG 25201
|| |||||||| || |||||| || |||| || || | ||||| ||| ||
Sbjct 1581 CCCGAGAGCTTTGACGGCTTCGATTTGGGTCAACTCGCCTGAGTCTTGAATGGTGCGACG 1522
Query 25202 AAATATCTGGGAACAGAGCGGCAATAAGTCGTCATCCCATGTTTTATCCAGGGCGATCAG 25261
|| || | || |||||||| | | ||| ||||||| || |||| || || || ||
Sbjct 1521 GAAGATTTTTGAGCAGAGCGGTAGCAGGTCTGCATCCCAGGTCTTATTCATGGTGACGAG 1462
Query 25262 CAGAGTGTTAATCTCCTGCATGGTTTCATCGTTAACCGGAGTGATGTCGCGTTCCGGCTG 25321
|| | || | || | || ||||| || |||| | | ||||||||| |||||
Sbjct 1461 CAAATCGTCGACTTCTTTCAGCGTTTCCGGTGTAGCCGGTGAAACGTCGCGTTCAGGCTG 1402
Query 25322 ACGTTCTGCAG 25332
||| || ||||
Sbjct 1401 ACGCTCGGCAG 1391
Score = 114 bits (126), Expect = 3e-21
Identities = 130/173 (75%), Gaps = 1/173 (1%)
Strand=Plus/Minus
Query 31072 ATGCTGCTTGCTGTTCTTGAATGGGGGGTCGTTGACGACGACATGGCTCGATTGGCGCGA 31131
|||||||| || | | || ||||| || |||||||| ||||||||| | | |||||
Sbjct 39246 ATGCTGCTGGCAGAGTTGGAGTGGGGCGTAGTTGACGATGACATGGCTAGGCTAGCGCGG 39187
Query 31132 CAAGTTGCTGCGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAA 31191
||||||| | | ||||| || ||||| |||||||||||||||||||| || || |||
Sbjct 39186 GAAGTTGCCGGTCTGCTCACAAAGAAAAATCGCCCGGCGGCAACCGAGCGATCAGATCAA 39127
Query 31192 ATCCAGATGGAGTTCTGAG-GTCATTACTGGATCTATCAACAGGAGTCATTAT 31243
||| || ||||||| || |||||||| || |||||||| |||||
Sbjct 39126 ATCACCATAACATTCTGAGACGAATAACTGGATCAATTCACAGGAGTAATTAT 39074
>seq9686
Length=37809
Score = 80.6 bits (88), Expect = 7e-11
Identities = 88/117 (75%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 17165 AATCCGTTTGGCGATATCAAATCGGATGGCACGGTGAAAACGGCTCTCGAAAACCTTGGT 17224
|||||||| | || |||||| | || | || || || ||||||||| ||||||||||
Sbjct 25133 AATCCGTTCGCAGACATCAAAGCCGACGCTACCGTAAACACGGCTCTCTCAAACCTTGGT 25192
Query 17225 TTGGGAGAAGCAGCTAAAAGGAATGTAGGTACAGGGGCGAATCAGATACCTGATATG 17281
||| ||| || || ||||| |||| ||||| ||||| || || || || || |||
Sbjct 25193 TTGAAAGAGGCGGCAAAAAGAGATGTTGGTACCGGGGCAAACCAAATTCCGGACATG 25249
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 122634843054398
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |