Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_027339.1 Length=38389 Score E Sequences producing significant alignments: (Bits) Value seq4723 619 3e-173 seq9686 80.6 7e-11 >seq4723 Length=43540 Score = 619 bits (686), Expect = 3e-173 Identities = 682/911 (75%), Gaps = 15/911 (2%) Strand=Plus/Minus Query 24422 TTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTT 24481 ||||| |||||| |||||| || || || |||||||| || ||||| ||||| || | Sbjct 2286 TTCATTTCCATTGTTCCCCATATGTGAAGCCGATTTCAGCAAGCGCCTCATCCATCTTCT 2227 Query 24482 CGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGCTCAACCA 24541 ||||||| ||||||||||||||||||||| |||||||| || || || || || |||| Sbjct 2226 CGATGAATTCCGGCACCATCTCGTCAAAATCAGCCATGTATTTGTCGTCACGTTCGACCA 2167 Query 24542 CGACATAATGCAGGCCTTCACGCTTCATTCGTGGGTCATAGTTGGCAAAGTACCAGGCAT 24601 ||||| || | |||||| || ||||| |||||||| || ||||||||| ||||||| | Sbjct 2166 AGACATGGTGGATGCCTTCGCGTTTCATGCGTGGGTCGTAATTGGCAAAGAACCAGGCGT 2107 Query 24602 CTTTTCGCGTTACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTTATGGCCT 24661 |||| || | ||||||||||||||| |||||||||||||| || ||||| ||||||| Sbjct 2106 TCTTTCCGGTAATCCACATGCTGTACTGAACCTGGGCCATGTACGCGGACTTGATGGCCT 2047 Query 24662 CGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTTCAA 24721 | || || || |||| |||||||||||| || |||||||| || ||||| |||||||| | Sbjct 2046 CAAAGCCGCCAAGCCTGAATTTCATGAAGTCGCGGGAGGTGAAAGGGCACTTCAGTTCGA 1987 Query 24722 GGCCGTTGCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATATTTTCGTCGC 24781 |||| | ||| |||||| | || || ||||||||||| ||||||||||| ||||||| Sbjct 1986 GGCCAAAGTCGTTACTGCACAGCCCGTCAGGAGAGCAGGCCGTGCGCATATTCTCGTCGC 1927 Query 24782 GATAGATGATCGGGGATTCAGTAACATTCACGCCGGAAGTGAATTCAAACAGGGTTCTGG 24841 | ||| |||||| || || | || | ||||||| ||||| || || ||||||| | Sbjct 1926 GGAAGAGGATCGGCGACTCTATGACGGTAACGCCGGTCGTGAACTCGAAAAGGGTTCGCG 1867 Query 24842 CGTCGTTCTCGTACTGTTTTCCCCAGGCCAGCGCCTTAGCATTAACTTCCGGAGCCACAC 24901 |||| | ||| | ||||| ||||| ||||||| ||| || ||||||||||| | || | Sbjct 1866 CGTCTTCTTCGAATTGTTTACCCCATGCCAGCGACTTGGCGTTAACTTCCGGCGATACGC 1807 Query 24902 CGGTGCAAACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCT 24961 ||||||| || || |||||||||||||||||||| |||||||||||||| | |||||||| Sbjct 1806 CGGTGCAGACTTCCGCCAGCAGGGTGTGGAAGTAAGACATTTTCATGTCCGTCCACTTCT 1747 Query 24962 TTCCTGAGCGGGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCC 25021 | || ||||| || || | || |||||| ||||| || || || || |||||||| | Sbjct 1746 TCCCGGAGCGAGGTTTGGAAATTACGTTGCTGACTTCAGATGCCGTAATTACGCCGAGGC 1687 Query 25022 GTAATTTGTGCCATGCATCATCCCCCTGTTCGACAGCTCTCACGTCGATCCCGGTACGCT 25081 | | | ||||| || ||||| || || ||||| | | | ||||| || || || || Sbjct 1686 GCAGCCTTTGCCACGCTTCATCGCCTTGCTCGACCGTTGTTACGTCAATGCCCGTCCGGG 1627 Query 25082 GCAGGATAATGTCCGGTGTCATGCTGCCACCTTCTGCTCAGTGGCTTTCTGTTTCAGGAA 25141 ||||||||| || ||||||||||||| ||| ||||| || ||||| Sbjct 1626 CCAGGATAATTTCAGGTGTCATGCTGC---------------GGCCTTCTGCTTAAGGAA 1582 Query 25142 TCCAAGAGCTTTCACTGCTTCGGCCTGTGTCAGTTCTGACGATGCGCGAATGTCGCGGCG 25201 || |||||||| || |||||| || |||| || || | ||||| ||| || Sbjct 1581 CCCGAGAGCTTTGACGGCTTCGATTTGGGTCAACTCGCCTGAGTCTTGAATGGTGCGACG 1522 Query 25202 AAATATCTGGGAACAGAGCGGCAATAAGTCGTCATCCCATGTTTTATCCAGGGCGATCAG 25261 || || | || |||||||| | | ||| ||||||| || |||| || || || || Sbjct 1521 GAAGATTTTTGAGCAGAGCGGTAGCAGGTCTGCATCCCAGGTCTTATTCATGGTGACGAG 1462 Query 25262 CAGAGTGTTAATCTCCTGCATGGTTTCATCGTTAACCGGAGTGATGTCGCGTTCCGGCTG 25321 || | || | || | || ||||| || |||| | | ||||||||| ||||| Sbjct 1461 CAAATCGTCGACTTCTTTCAGCGTTTCCGGTGTAGCCGGTGAAACGTCGCGTTCAGGCTG 1402 Query 25322 ACGTTCTGCAG 25332 ||| || |||| Sbjct 1401 ACGCTCGGCAG 1391 Score = 114 bits (126), Expect = 3e-21 Identities = 130/173 (75%), Gaps = 1/173 (1%) Strand=Plus/Minus Query 31072 ATGCTGCTTGCTGTTCTTGAATGGGGGGTCGTTGACGACGACATGGCTCGATTGGCGCGA 31131 |||||||| || | | || ||||| || |||||||| ||||||||| | | ||||| Sbjct 39246 ATGCTGCTGGCAGAGTTGGAGTGGGGCGTAGTTGACGATGACATGGCTAGGCTAGCGCGG 39187 Query 31132 CAAGTTGCTGCGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAA 31191 ||||||| | | ||||| || ||||| |||||||||||||||||||| || || ||| Sbjct 39186 GAAGTTGCCGGTCTGCTCACAAAGAAAAATCGCCCGGCGGCAACCGAGCGATCAGATCAA 39127 Query 31192 ATCCAGATGGAGTTCTGAG-GTCATTACTGGATCTATCAACAGGAGTCATTAT 31243 ||| || ||||||| || |||||||| || |||||||| ||||| Sbjct 39126 ATCACCATAACATTCTGAGACGAATAACTGGATCAATTCACAGGAGTAATTAT 39074 >seq9686 Length=37809 Score = 80.6 bits (88), Expect = 7e-11 Identities = 88/117 (75%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 17165 AATCCGTTTGGCGATATCAAATCGGATGGCACGGTGAAAACGGCTCTCGAAAACCTTGGT 17224 |||||||| | || |||||| | || | || || || ||||||||| |||||||||| Sbjct 25133 AATCCGTTCGCAGACATCAAAGCCGACGCTACCGTAAACACGGCTCTCTCAAACCTTGGT 25192 Query 17225 TTGGGAGAAGCAGCTAAAAGGAATGTAGGTACAGGGGCGAATCAGATACCTGATATG 17281 ||| ||| || || ||||| |||| ||||| ||||| || || || || || ||| Sbjct 25193 TTGAAAGAGGCGGCAAAAAGAGATGTTGGTACCGGGGCAAACCAAATTCCGGACATG 25249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122634843054398