Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq5580 181 8e-41 >seq5580 Length=7482 Score = 181 bits (200), Expect = 8e-41 Identities = 305/437 (70%), Gaps = 7/437 (2%) Strand=Plus/Minus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 |||||||| || ||||| || || || || ||||||||||| ||||| || ||| Sbjct 6056 GTTTTGGCTTTCTTTGCCGCCTCTGATGGCATTGTCAATGAAAACTTGGTGGAGCGATTT 5997 Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969 || |||||||| || | || ||||| || ||||| || || || || |||||||| ||| Sbjct 5996 GCCCAAGAAGTGCAGGTTCCCGAAGCGCGCTGTTTCTACGGCTTCCAGATTGCCATGGAA 5937 Query 43970 AATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAG 44029 || |||||||| |||||||| ||| | || || || || ||| | | | ||| Sbjct 5936 AACATTCATTCCGAAATGTATTCACTTTTAATCGACACTTATATCCGATCTCCTGATGAG 5877 Query 44030 AAGCATCGAT--TGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACT 44087 || || ||| |||| || || ||||| | ||| | || | || || || | Sbjct 5876 AAACA--GATGCTGTTCCGAGCTATCGAAACCCTTCCTTGTGTAAAGAAGAAGGCCGATT 5819 Query 44088 GGGCCCTTAAATGGATAAAT-TCA--AATGATTCTTTTGGAGAACGACTTGTCGCGTTTG 44144 ||||| |||||||||| | || | | ||||| || ||| | |||| |||| Sbjct 5818 GGGCCTTTAAATGGATCTCTGACAACACAGCAGGTTTTGCTGAGCGAGTCATCGCCTTTG 5759 Query 44145 CAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAAC 44204 ||| || || || ||||| || || || || ||||| |||| || ||| | ||||| Sbjct 5758 CAGCCGTCGAGGGTATTTTTTTCTCTGGCTCTTTTGCCTCCATTTTCTGGCTGAAGAAGA 5699 Query 44205 GAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTAC 44264 ||||||||||||| || | || ||||| || ||| | || ||||| || || || | Sbjct 5698 GAGGTTTGATGCCCGGTCTTACTTTTTCCAACGAGCTCATTTCGCGTGACGAGGGTTTGC 5639 Query 44265 ATTGCGATTTTGCTTGC 44281 ||||||||||||||||| Sbjct 5638 ATTGCGATTTTGCTTGC 5622 Score = 82.4 bits (90), Expect = 6e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | ||||| ||| | || || |||||||||||||||||||| ||||| | || Sbjct 6330 TTTGTCCTTTTTCCTATTAAGTACCACGACATATGGCAAATGTACAAGAAAGCTGAAGCT 6271 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 || || ||||| || |||||||| ||| || Sbjct 6270 TCCTTCTGGACCGCTGAAGAAGTAGATCTG 6241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397162313427145