Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq6222 136 3e-27 seq7813 95.1 1e-14 >seq6222 Length=12937 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || ||||| |||| ||||| || | || || |||||||| |||||||| || | Sbjct 4422 CCGCCTCGCAAACGCAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGAC 4481 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || ||||||| || || || |||||| | |||||||| ||||| || || || Sbjct 4482 AAGGTACGACCGTCTTCCAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGGA 4541 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || ||||||| ||| | | |||| | ||||| | | |||||| Sbjct 4542 ATGCCTTCTTTGTCTTGGATCTTGGCTTTGACGTTTTCAATGGTGTCAGACGGCTCAACT 4601 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | ||| || | |||||| |||| ||| ||||| |||||||||||| Sbjct 4602 TCCAAAGTGATGGTTTTGCCGGTCAAAGTCTTCACGAAGATTTGCATA 4649 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27018 TTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG 27077 ||||| || || | ||||| |||||||| | || || || || || ||||| |||||| Sbjct 3735 TTGCCGCCACGGAGACGCAAGACCAAATGGAGAGTTGATTCCTTCTGGATATTATAGTCG 3794 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 || | | || | ||||| | || ||||||||| | || | ||| || ||||| || Sbjct 3795 GACAAGGTACGACCATCTTCCAATTGCTTACCGGCGAAGATCAAACGTTGCTGATCGGGA 3854 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | ||| || || || || ||| ||| | | |||| | ||||| | | |||| Sbjct 3855 GGAATACCTTCCTTGTCTTGAATTTTGGCTTTGACGTTTTCAATGGTGTCGGACGGTTCA 3914 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||||| | || || | ||||||||||| |||||||| |||||||||||| Sbjct 3915 ACTTCCAAGGTGATGGTTTTGCCCGTCAAGGTTTTCACGAAGATTTGCATA 3965 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || || | |||||||||||||| | || || ||||| ||||| ||||| || Sbjct 5104 TGCCACCACGGAGACGCAATACCAAATGCAGGGTGGATTCTTTCTGAATGTTGTAATCTG 5163 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | || | ||||| | || || || ||| |||| | ||| || || || || | Sbjct 5164 ACAACGTACGACCATCTTCCAATTGCTTGCCAGCGAAAATTAAACGTTGCTGGTCAGGGG 5223 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||| ||||| || || ||| ||| | | |||| | || || | | || | Sbjct 5224 GGATACCTTCTTTGTCTTGAATTTTGGCTTTGACGTTTTCAATGGTATCCGAAGGCTCTA 5283 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| || || |||| ||||||||||| || ||||| ||||||||||| Sbjct 5284 CTTCGAGGGTAATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 5332 >seq7813 Length=5936 Score = 95.1 bits (104), Expect = 1e-14 Identities = 371/572 (65%), Gaps = 15/572 (3%) Strand=Plus/Plus Query 131210 GGATAAAGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGCTT 131269 || |||| ||| |||||||| || ||||| ||||| | || | || ||||| | Sbjct 1759 GGGTAAAAGTTGATGTCAATGATCTTGTTCAAATTCCCTGTGACGACTTTGGTGACTTCT 1818 Query 131270 TTCAATTTGTCGAAATCAAACGTGCCAGTTTCGAGGTTTACAAATTGATTTACACATATT 131329 || | ||| | || ||| |||| | ||| || || || ||| | | || Sbjct 1819 TTGAGCTTGACAAAGTCATACGTCTTATCTTCT---TTCACGAACATATTCAGAGCAATG 1875 Query 131330 GACGCCAGATTACAAACTGCCGTTTCGTCATAATCGCAATACTGAACAATTTCGGCGCAC 131389 || |||| ||| || || || ||||||| | | |||| | |||||||| | ||| Sbjct 1876 GATGCCAAATTGCAGACAGCTATTTCGTCCGGAGAGGAATATTCGACAATTTCCGTACAC 1935 Query 131390 AAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATT-GCTTTTAGCATTCACATGG-T 131447 | ||| || || ||||| |||| ||||| ||||| | |||| | | ||| | | Sbjct 1936 AGATTCGAGCATTTGATGGTTCCCAGGTTTTGCTGATTAGATTTTCGGTT--ACAGGCAT 1993 Query 131448 CCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAATGTATCGA-AAG 131506 ||||||| | ||||| |||||||||||||| ||||| | |||||||| ||| | Sbjct 1994 CCTTGTAGAGGATGTAAGGCGTGCCCGTTTCCACTTGGGAGTCAATAAT-AGCCGACCAA 2052 Query 131507 AGTTTTCGAGCAGACAATTGATATTTGTATTGGCCGCGTTTTTCGTAATTTTCGTACAAC 131566 |||| | ||| | |||| |||| ||| |||||| | ||| || Sbjct 2053 AGTTGCTGGGCACGAACTTGACGCCGATATTTGCCCTCGGATTCGTACTGACGGTATAAA 2112 Query 131567 GTTTCAAAGT--TTTGGCCAAACGAACTGTCCAAATTGGGACATTC-GCTGGGACACATT 131623 | |||||| | | | ||| | | || ||| || ||||| || ||| ||||| Sbjct 2113 GCTTCAAATTTCTCTCCCCATAGGTCATG--CAAGCCCGGGCATTCTGCAGGG-CACATC 2169 Query 131624 AGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCG 131683 | ||||| |||||| |||||| || ||||||| || |||| ||| | ||| Sbjct 2170 AAACTCCACATTTCGTTCTTTTCAACGCGGCGCATAAACTCGTCAGGCATCCACAGTGCG 2229 Query 131684 TACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAG 131743 || || | ||| | || ||| |||||| |||| | | || || | || | || Sbjct 2230 TAAAATAAATCACGCGCCCTTTGTTCTTCTTTACCAGTGTTCTTCTTGAGATCAAGGAAT 2289 Query 131744 TCCAAAATGTCCGCATGCCAGGGTTCCAAATA 131775 || |||| ||| || ||||| ||||||||||| Sbjct 2290 TCGAAAACGTCAGCGTGCCACGGTTCCAAATA 2321 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 131798 TTACCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAA 131857 || |||||||||| ||||| | | | |||||||||||||| | |||||| | | | Sbjct 2705 TTGCCGCCTTGATCAACATATCTTGCAGTATTGTTGTATACGCGAAGCATGGGAACAAGA 2764 Query 131858 CCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACG 131917 |||||| | | || || || | ||||||| || | |||||||| || || Sbjct 2765 CCGTTGCTGATACCGTTAGTACCAGCAATGTAGGAACCTGTCGCTCTGATGCAATGGACA 2824 Query 131918 TTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGTGTTATAG 131977 || ||||||||||| || || |||| ||||| || || |||| || | ||| | ||| Sbjct 2825 TTCAGTCCAATACCGCCAGCGGATTTGGAGATGAGAGCACATTGCGTCAAAGTCCTGTAG 2884 Query 131978 ATACCTTCCACGCTGTC 131994 || ||||| | |||||| Sbjct 2885 ATCCCTTCGATGCTGTC 2901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424620409199448