Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq6222 136 3e-27
seq7813 95.1 1e-14
>seq6222
Length=12937
Score = 136 bits (150), Expect = 3e-27
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|| || ||||| |||| ||||| || | || || |||||||| |||||||| || |
Sbjct 4422 CCGCCTCGCAAACGCAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGAC 4481
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| | | || ||||||| || || || |||||| | |||||||| ||||| || || ||
Sbjct 4482 AAGGTACGACCGTCTTCCAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGGA 4541
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| || ||||| || ||||||| ||| | | |||| | ||||| | | ||||||
Sbjct 4542 ATGCCTTCTTTGTCTTGGATCTTGGCTTTGACGTTTTCAATGGTGTCAGACGGCTCAACT 4601
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| | ||| || | |||||| |||| ||| ||||| ||||||||||||
Sbjct 4602 TCCAAAGTGATGGTTTTGCCGGTCAAAGTCTTCACGAAGATTTGCATA 4649
Score = 120 bits (132), Expect = 3e-22
Identities = 165/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 27018 TTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG 27077
||||| || || | ||||| |||||||| | || || || || || ||||| ||||||
Sbjct 3735 TTGCCGCCACGGAGACGCAAGACCAAATGGAGAGTTGATTCCTTCTGGATATTATAGTCG 3794
Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137
|| | | || | ||||| | || ||||||||| | || | ||| || ||||| ||
Sbjct 3795 GACAAGGTACGACCATCTTCCAATTGCTTACCGGCGAAGATCAAACGTTGCTGATCGGGA 3854
Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197
|| | ||| || || || || ||| ||| | | |||| | ||||| | | ||||
Sbjct 3855 GGAATACCTTCCTTGTCTTGAATTTTGGCTTTGACGTTTTCAATGGTGTCGGACGGTTCA 3914
Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
||||| | || || | ||||||||||| |||||||| ||||||||||||
Sbjct 3915 ACTTCCAAGGTGATGGTTTTGCCCGTCAAGGTTTTCACGAAGATTTGCATA 3965
Score = 102 bits (112), Expect = 7e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078
|||| || || | |||||||||||||| | || || ||||| ||||| ||||| ||
Sbjct 5104 TGCCACCACGGAGACGCAATACCAAATGCAGGGTGGATTCTTTCTGAATGTTGTAATCTG 5163
Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138
|| | || | ||||| | || || || ||| |||| | ||| || || || || |
Sbjct 5164 ACAACGTACGACCATCTTCCAATTGCTTGCCAGCGAAAATTAAACGTTGCTGGTCAGGGG 5223
Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198
| | ||| ||||| || || ||| ||| | | |||| | || || | | || |
Sbjct 5224 GGATACCTTCTTTGTCTTGAATTTTGGCTTTGACGTTTTCAATGGTATCCGAAGGCTCTA 5283
Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|||| || || |||| ||||||||||| || ||||| |||||||||||
Sbjct 5284 CTTCGAGGGTAATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 5332
>seq7813
Length=5936
Score = 95.1 bits (104), Expect = 1e-14
Identities = 371/572 (65%), Gaps = 15/572 (3%)
Strand=Plus/Plus
Query 131210 GGATAAAGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGCTT 131269
|| |||| ||| |||||||| || ||||| ||||| | || | || ||||| |
Sbjct 1759 GGGTAAAAGTTGATGTCAATGATCTTGTTCAAATTCCCTGTGACGACTTTGGTGACTTCT 1818
Query 131270 TTCAATTTGTCGAAATCAAACGTGCCAGTTTCGAGGTTTACAAATTGATTTACACATATT 131329
|| | ||| | || ||| |||| | ||| || || || ||| | | ||
Sbjct 1819 TTGAGCTTGACAAAGTCATACGTCTTATCTTCT---TTCACGAACATATTCAGAGCAATG 1875
Query 131330 GACGCCAGATTACAAACTGCCGTTTCGTCATAATCGCAATACTGAACAATTTCGGCGCAC 131389
|| |||| ||| || || || ||||||| | | |||| | |||||||| | |||
Sbjct 1876 GATGCCAAATTGCAGACAGCTATTTCGTCCGGAGAGGAATATTCGACAATTTCCGTACAC 1935
Query 131390 AAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATT-GCTTTTAGCATTCACATGG-T 131447
| ||| || || ||||| |||| ||||| ||||| | |||| | | ||| | |
Sbjct 1936 AGATTCGAGCATTTGATGGTTCCCAGGTTTTGCTGATTAGATTTTCGGTT--ACAGGCAT 1993
Query 131448 CCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAATGTATCGA-AAG 131506
||||||| | ||||| |||||||||||||| ||||| | |||||||| ||| |
Sbjct 1994 CCTTGTAGAGGATGTAAGGCGTGCCCGTTTCCACTTGGGAGTCAATAAT-AGCCGACCAA 2052
Query 131507 AGTTTTCGAGCAGACAATTGATATTTGTATTGGCCGCGTTTTTCGTAATTTTCGTACAAC 131566
|||| | ||| | |||| |||| ||| |||||| | ||| ||
Sbjct 2053 AGTTGCTGGGCACGAACTTGACGCCGATATTTGCCCTCGGATTCGTACTGACGGTATAAA 2112
Query 131567 GTTTCAAAGT--TTTGGCCAAACGAACTGTCCAAATTGGGACATTC-GCTGGGACACATT 131623
| |||||| | | | ||| | | || ||| || ||||| || ||| |||||
Sbjct 2113 GCTTCAAATTTCTCTCCCCATAGGTCATG--CAAGCCCGGGCATTCTGCAGGG-CACATC 2169
Query 131624 AGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCG 131683
| ||||| |||||| |||||| || ||||||| || |||| ||| | |||
Sbjct 2170 AAACTCCACATTTCGTTCTTTTCAACGCGGCGCATAAACTCGTCAGGCATCCACAGTGCG 2229
Query 131684 TACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAG 131743
|| || | ||| | || ||| |||||| |||| | | || || | || | ||
Sbjct 2230 TAAAATAAATCACGCGCCCTTTGTTCTTCTTTACCAGTGTTCTTCTTGAGATCAAGGAAT 2289
Query 131744 TCCAAAATGTCCGCATGCCAGGGTTCCAAATA 131775
|| |||| ||| || ||||| |||||||||||
Sbjct 2290 TCGAAAACGTCAGCGTGCCACGGTTCCAAATA 2321
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 131798 TTACCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAA 131857
|| |||||||||| ||||| | | | |||||||||||||| | |||||| | | |
Sbjct 2705 TTGCCGCCTTGATCAACATATCTTGCAGTATTGTTGTATACGCGAAGCATGGGAACAAGA 2764
Query 131858 CCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACG 131917
|||||| | | || || || | ||||||| || | |||||||| || ||
Sbjct 2765 CCGTTGCTGATACCGTTAGTACCAGCAATGTAGGAACCTGTCGCTCTGATGCAATGGACA 2824
Query 131918 TTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGTGTTATAG 131977
|| ||||||||||| || || |||| ||||| || || |||| || | ||| | |||
Sbjct 2825 TTCAGTCCAATACCGCCAGCGGATTTGGAGATGAGAGCACATTGCGTCAAAGTCCTGTAG 2884
Query 131978 ATACCTTCCACGCTGTC 131994
|| ||||| | ||||||
Sbjct 2885 ATCCCTTCGATGCTGTC 2901
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424620409199448
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |