Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq5580 100 4e-16 seq7813 96.9 4e-15 seq985 86.0 8e-12 >seq5580 Length=7482 Score = 100 bits (110), Expect = 4e-16 Identities = 431/663 (65%), Gaps = 30/663 (5%) Strand=Plus/Plus Query 129742 CTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAATGGGTT 129801 |||||| ||||| || ||||| || || ||| || || |||||||| || || ||||| Sbjct 5352 CTTCTCAAAGAAATTCGTCTTGCCTTCTAAGGAAATGTTTTCCATAAAGTCGAAAGGGTT 5411 Query 129802 CTTTGAGTTCCAAATTGCTGGCAC-TCCAATCTGTTTGAG---GAGACGATCCGAGACGT 129857 | || || |||| ||| || | || ||| || ||| || || | |||| Sbjct 5412 TTCGGAATTGTAAATCT-TGGGACATTGAA---GTTCGACCAAGAGCCGGTCTGCGACGA 5467 Query 129858 ACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGA-GGTTACATGGGAGCGCG 129916 |||||||||||| |||| || ||||||| || | | || ||| || | || Sbjct 5468 ACTCAATGTACTGTTTCATCAAATCACAGTTCATGCCAAGCATGGCTACC-GGTAAAGCA 5526 Query 129917 TCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATG-GCGTGAATGGTCTC 129975 || | ||| | | ||| || ||||||| || || | ||| |||| || | | Sbjct 5527 TCGGTCAAGAATTCTTGCTCTATAACCACAGCATCGCGGATGATTTGCGT-AACGCGAGC 5585 Query 129976 CGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCCTGGTGGAGACC 130035 ||| ||| | ||| |||| ||| | | ||||| || || | ||| Sbjct 5586 GACGCCGGGTTTGTTGACCAAATGTTTGTACATAAGGCAAGCAAAATCGCAATGCAAACC 5645 Query 130036 CTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTT 130095 ||||||||| || ||||| || || || || ||||| ||||| | ||| | |||||| Sbjct 5646 CTCGTCACGCGAAATGAGCTCGTTGGAAAAAGTAAGACCGGGCATCAAACCTCTCTTCTT 5705 Query 130096 CAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGC 130155 || ||||||||| | ||| ||||||||||| || || ||||| || || || || Sbjct 5706 CAGCCAGAAAATGGAGGCAAAAGAGCCAGAGAAAAAAATACCCTCGACGGCTGCAAAGGC 5765 Query 130156 AAAGAGACGCTCAGCAAAGGAGCGGGACTTTG-TATCA---AACCACTTCATCGCCCACT 130211 | || ||||||||||| | | | || || | ||| | ||| || | ||||| | Sbjct 5766 GATGACTCGCTCAGCAAA--ACCTG--CTGTGTTGTCAGAGATCCATTTAAAGGCCCAAT 5821 Query 130212 GCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCT-TTTCT 130270 ||||| |||| | ||| || | ||| | ||| ||| || || | ||| ||||| Sbjct 5822 CGGCCTTCTTCTTTACACAAGGAAGGGTTTCGATAGCTCGGAACAG---CATCTGTTTCT 5878 Query 130271 GAT--GGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGACCATTT 130328 || ||| | ||| || | || || | |||||| ||||| ||| | ||| Sbjct 5879 CATCAGGAGATCGGATATAAGTGTCGATTAAAAGTGAATACATTTCGGAATGAATGTTTT 5938 Query 130329 CATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCTGC 130386 | |||||| ||| | |||||||| ||||||||||| | ||| || || | || Sbjct 5939 C--CATGGCAATCTGGAAGCCGTAGAAACAGCGCGCTTCGGGAACCTGCACTTCTTGGGC 5996 Query 130387 AAA 130389 ||| Sbjct 5997 AAA 5999 >seq7813 Length=5936 Score = 96.9 bits (106), Expect = 4e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 118686 TCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCC 118745 ||||| || || || || || || || || |||| ||| || |||| | || ||| Sbjct 1846 TCTTCTTTCACGAACATATTCAGAGCAATGGATGCCAAATTGCAGACAGCTATTTCGTCC 1905 Query 118746 TTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTC 118805 | | || || | ||||||||| |||| || || | || ||||| |||| ||| Sbjct 1906 GGAGAGGAATATTCGACAATTTCCGTACACAGATTCGAGCATTTGATGGTTCCCAGGTTT 1965 Query 118806 TTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCC 118865 | ||||| || ||| |||||| ||||||||||| || ||||| ||||| ||||| ||| Sbjct 1966 TGCTGATTAGATTTTCGGTTACAGGCATCCTTGTAGAGGATGTAAGGCGTGCCCGTTTCC 2025 Query 118866 GTTTGGGACTTGAGAATAGCC 118886 |||||| | | ||||||| Sbjct 2026 ACTTGGGAGTCAATAATAGCC 2046 >seq985 Length=45870 Score = 86.0 bits (94), Expect = 8e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 179062 GCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATA 179121 || |||||||||||| ||||| || ||||| |||||| |||| || | |||||| Sbjct 12707 GCGTCTTTGCCACCCTGCAGACGAGTGCCAAACTGACCAATTGGCAGCAGCAAGTTGATA 12648 Query 179122 TTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCA 179181 ||||| || |||| ||| | ||||| || | ||| || || | |||| ||||| Sbjct 12647 TTGTTCGAGCCCACAAAGTTCTGCGCCAAGTTAATAATGGTCCCCATCAAGGAGGCTTCA 12588 Query 179182 CCGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGC 179228 |||||||| ||||| || | || || || | | |||||||| || Sbjct 12587 CCGTGATGATAAGCTGAATGTTCAGCTACCGAACCAGCCAACTGGGC 12541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617966511153240