Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq5580 100 4e-16
seq7813 96.9 4e-15
seq985 86.0 8e-12
>seq5580
Length=7482
Score = 100 bits (110), Expect = 4e-16
Identities = 431/663 (65%), Gaps = 30/663 (5%)
Strand=Plus/Plus
Query 129742 CTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAATGGGTT 129801
|||||| ||||| || ||||| || || ||| || || |||||||| || || |||||
Sbjct 5352 CTTCTCAAAGAAATTCGTCTTGCCTTCTAAGGAAATGTTTTCCATAAAGTCGAAAGGGTT 5411
Query 129802 CTTTGAGTTCCAAATTGCTGGCAC-TCCAATCTGTTTGAG---GAGACGATCCGAGACGT 129857
| || || |||| ||| || | || ||| || ||| || || | ||||
Sbjct 5412 TTCGGAATTGTAAATCT-TGGGACATTGAA---GTTCGACCAAGAGCCGGTCTGCGACGA 5467
Query 129858 ACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGA-GGTTACATGGGAGCGCG 129916
|||||||||||| |||| || ||||||| || | | || ||| || | ||
Sbjct 5468 ACTCAATGTACTGTTTCATCAAATCACAGTTCATGCCAAGCATGGCTACC-GGTAAAGCA 5526
Query 129917 TCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATG-GCGTGAATGGTCTC 129975
|| | ||| | | ||| || ||||||| || || | ||| |||| || | |
Sbjct 5527 TCGGTCAAGAATTCTTGCTCTATAACCACAGCATCGCGGATGATTTGCGT-AACGCGAGC 5585
Query 129976 CGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCCTGGTGGAGACC 130035
||| ||| | ||| |||| ||| | | ||||| || || | |||
Sbjct 5586 GACGCCGGGTTTGTTGACCAAATGTTTGTACATAAGGCAAGCAAAATCGCAATGCAAACC 5645
Query 130036 CTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTT 130095
||||||||| || ||||| || || || || ||||| ||||| | ||| | ||||||
Sbjct 5646 CTCGTCACGCGAAATGAGCTCGTTGGAAAAAGTAAGACCGGGCATCAAACCTCTCTTCTT 5705
Query 130096 CAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGC 130155
|| ||||||||| | ||| ||||||||||| || || ||||| || || || ||
Sbjct 5706 CAGCCAGAAAATGGAGGCAAAAGAGCCAGAGAAAAAAATACCCTCGACGGCTGCAAAGGC 5765
Query 130156 AAAGAGACGCTCAGCAAAGGAGCGGGACTTTG-TATCA---AACCACTTCATCGCCCACT 130211
| || ||||||||||| | | | || || | ||| | ||| || | ||||| |
Sbjct 5766 GATGACTCGCTCAGCAAA--ACCTG--CTGTGTTGTCAGAGATCCATTTAAAGGCCCAAT 5821
Query 130212 GCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCT-TTTCT 130270
||||| |||| | ||| || | ||| | ||| ||| || || | ||| |||||
Sbjct 5822 CGGCCTTCTTCTTTACACAAGGAAGGGTTTCGATAGCTCGGAACAG---CATCTGTTTCT 5878
Query 130271 GAT--GGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGACCATTT 130328
|| ||| | ||| || | || || | |||||| ||||| ||| | |||
Sbjct 5879 CATCAGGAGATCGGATATAAGTGTCGATTAAAAGTGAATACATTTCGGAATGAATGTTTT 5938
Query 130329 CATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCTGC 130386
| |||||| ||| | |||||||| ||||||||||| | ||| || || | ||
Sbjct 5939 C--CATGGCAATCTGGAAGCCGTAGAAACAGCGCGCTTCGGGAACCTGCACTTCTTGGGC 5996
Query 130387 AAA 130389
|||
Sbjct 5997 AAA 5999
>seq7813
Length=5936
Score = 96.9 bits (106), Expect = 4e-15
Identities = 142/201 (71%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 118686 TCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCC 118745
||||| || || || || || || || || |||| ||| || |||| | || |||
Sbjct 1846 TCTTCTTTCACGAACATATTCAGAGCAATGGATGCCAAATTGCAGACAGCTATTTCGTCC 1905
Query 118746 TTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTC 118805
| | || || | ||||||||| |||| || || | || ||||| |||| |||
Sbjct 1906 GGAGAGGAATATTCGACAATTTCCGTACACAGATTCGAGCATTTGATGGTTCCCAGGTTT 1965
Query 118806 TTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCC 118865
| ||||| || ||| |||||| ||||||||||| || ||||| ||||| ||||| |||
Sbjct 1966 TGCTGATTAGATTTTCGGTTACAGGCATCCTTGTAGAGGATGTAAGGCGTGCCCGTTTCC 2025
Query 118866 GTTTGGGACTTGAGAATAGCC 118886
|||||| | | |||||||
Sbjct 2026 ACTTGGGAGTCAATAATAGCC 2046
>seq985
Length=45870
Score = 86.0 bits (94), Expect = 8e-12
Identities = 119/167 (71%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 179062 GCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATA 179121
|| |||||||||||| ||||| || ||||| |||||| |||| || | ||||||
Sbjct 12707 GCGTCTTTGCCACCCTGCAGACGAGTGCCAAACTGACCAATTGGCAGCAGCAAGTTGATA 12648
Query 179122 TTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCA 179181
||||| || |||| ||| | ||||| || | ||| || || | |||| |||||
Sbjct 12647 TTGTTCGAGCCCACAAAGTTCTGCGCCAAGTTAATAATGGTCCCCATCAAGGAGGCTTCA 12588
Query 179182 CCGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGC 179228
|||||||| ||||| || | || || || | | |||||||| ||
Sbjct 12587 CCGTGATGATAAGCTGAATGTTCAGCTACCGAACCAGCCAACTGGGC 12541
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 617966511153240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |