Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq5580 118 1e-21 seq985 86.0 7e-12 >seq5580 Length=7482 Score = 118 bits (130), Expect = 1e-21 Identities = 175/244 (72%), Gaps = 8/244 (3%) Strand=Plus/Minus Query 94698 TGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGC 94757 || |||||| || ||| || ||| ||| |||| |||| ||| | | ||||| || Sbjct 5883 TGATGAGAAACAGATGCTGTTCCGAGCTATCGAAACCCTTCCTTGTGTAAAGAAGAAGGC 5824 Query 94758 GGATTGGGCTATGAAGTGGTT---TGATA-CAAAGTCGCGTTCCTTTGCTGAGCGACTCT 94813 |||||||| | || ||| | ||| | || || | ||| ||||||||||| || Sbjct 5823 CGATTGGGCCTTTAAATGGATCTCTGACAACACAGCAG-GTT---TTGCTGAGCGAGTCA 5768 Query 94814 TCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGC 94873 |||| ||||| || |||||||| || |||||||| || || | | |||| |||| Sbjct 5767 TCGCCTTTGCAGCCGTCGAGGGTATTTTTTTCTCTGGCTCTTTTGCCTCCATTTTCTGGC 5708 Query 94874 TCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACG 94933 | |||||| ||||| | ||||| ||||| || ||||||||||| || || ||||||| Sbjct 5707 TGAAGAAGAGAGGTTTGATGCCCGGTCTTACTTTTTCCAACGAGCTCATTTCGCGTGACG 5648 Query 94934 AGGG 94937 |||| Sbjct 5647 AGGG 5644 >seq985 Length=45870 Score = 86.0 bits (94), Expect = 7e-12 Identities = 208/314 (66%), Gaps = 6/314 (2%) Strand=Plus/Minus Query 168278 CCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGAAG 168337 || ||||| ||||| |||| |||||| || || |||||||| | | || ||||| | Sbjct 12884 CCGGTACCAATACCATCTGCACCGTTGACAAGGACCATGGGTATGATGGGTATGTACCAA 12825 Query 168338 TCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCGGA 168397 || || ||||| || |||||| || |||| ||| | | |||||| | ||| Sbjct 12824 TCAGGTTCAATCTTAAGATTGTCGTCACGCAGGTAGTGGAGTAAAGCATCATCGTTAGGA 12765 Query 168398 TCAAAGATCTTTCGGGCATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGACGCA 168457 | || ||| || | || | | || ||||| ||||| | || | || ||| Sbjct 12764 TGGAAAATCAAACGCGTGAGTTCGGACAATTTGGTAAAAATATAACGCG---GCGATGCA 12708 Query 168458 ---TCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATA 168514 || || |||||| ||||| || |||||||||||| ||| || | |||||| Sbjct 12707 GCGTCTTTGCCACCCTGCAGACGAGTGCCAAACTGACCAATTGGCAGCAGCAAGTTGATA 12648 Query 168515 TTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCA 168574 ||||| || |||| ||| | |||||| || | ||| || || | ||| ||||| Sbjct 12647 TTGTTCGAGCCCACAAAGTTCTGCGCCAAGTTAATAATGGTCCCCATCAAGGAGGCTTCA 12588 Query 168575 CCGTGGTGGTACGC 168588 ||||| || || || Sbjct 12587 CCGTGATGATAAGC 12574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582818768511960