Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq6222 168 8e-37 >seq6222 Length=12937 Score = 168 bits (186), Expect = 8e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || ||||| || || |||||||||||||| || || || ||| | Sbjct 5333 AATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACTATTACCCTCGAAGTAGAGCCTTC 5274 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||||| ||| | || || |||||||| ||||| || || || || || ||||| Sbjct 5273 GGATACCATTGAAAACGTCAAAGCCAAAATTCAAGACAAAGAAGGTATCCCCCCTGACCA 5214 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| ||| ||||||| ||||| |||||| | || |||| |||||| | |||| || || Sbjct 5213 GCAACGTTTAATTTTCGCTGGCAAGCAATTGGAAGATGGTCGTACGTTGTCAGATTACAA 5154 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || |||||||| || ||| | || |||||||| || ||||| Sbjct 5153 CATTCAGAAAGAATCCACCCTGCATTTGGTATTGCGTCTCCGTGGTGG 5106 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || || || | || ||||| || || || | || ||||| | Sbjct 3964 ATGCAAATCTTCGTGAAAACCTTGACGGGCAAAACCATCACCTTGGAAGTTGAACCGTCC 3905 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | || || |||||||| |||||||| || |||||||| || ||| Sbjct 3904 GACACCATTGAAAACGTCAAAGCCAAAATTCAAGACAAGGAAGGTATTCCTCCCGATCAG 3845 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | || || || ||||||||| | || |||| ||||||| | | ||||||||| Sbjct 3844 CAACGTTTGATCTTCGCCGGTAAGCAATTGGAAGATGGTCGTACCTTGTCCGACTATAAT 3785 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| ||||| ||| | ||||||||||| || || || Sbjct 3784 ATCCAGAAGGAATCAACTCTCCATTTGGTCTTGCGTCTCCGTGGCGG 3738 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || || || || |||||||| || ||| | || || || || Sbjct 4192 ATGCAGATTTTTGTAAAAACCCTCACTGGCAAGACGATCACTTTGGAAGTCGAACCATCA 4133 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||||||||| || |||||||| || |||||||| || || Sbjct 4132 GACACCATTGAGAACGTCAAGGCTAAAATCCAAGACAAGGAAGGCATTCCTCCCGATCAA 4073 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | |||||||| || ||||| | || |||| ||| || | | ||||| || Sbjct 4072 CAACGTTTGATTTTTGCCGGCAAGCAGTTAGAAGATGGTCGCACTTTGTCCGACTACAAC 4013 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || ||||| ||||||||||||||| ||||||| || ||||| Sbjct 4012 ATCCAGAAAGAATCTACTCTTCATCTAGTCCTGCGTCTGCGTGGTGG 3966 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| | |||||||| || || ||| | || |||||| | | Sbjct 4648 ATGCAAATCTTCGTGAAGACTTTGACCGGCAAAACCATCACTTTGGAAGTTGAGCCGTCT 4589 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | || || || || || ||||| || || ||||| || ||||| Sbjct 4588 GACACCATTGAAAACGTCAAAGCCAAGATCCAAGACAAAGAAGGCATTCCCCCTGACCAA 4529 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || || || || |||||||| || || | ||||||| | | || || ||| Sbjct 4528 CAACGTCTCATCTTCGCCGGCAAGCAACTGGAAGACGGTCGTACCTTGTCTGATTACAAT 4469 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| |||||||| ||||| | || ||||| | || || || Sbjct 4468 ATCCAAAAAGAATCCACCCTTCACTTGGTTCTGCGTTTGCGAGGCGG 4422 Score = 132 bits (146), Expect = 5e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || ||||| || | || |||||||| ||||| | || |||||| | Sbjct 5104 ATGCAAATTTTCGTCAAAACCTTGACTGGCAAGACCATTACCTTGGAAGTTGAGCCGTCC 5045 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||||||||| || ||||| || || |||||||| || || Sbjct 5044 GACACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGCATTCCTCCCGATCAA 4985 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | ||||| ||||| || ||| | || || | |||||| | | ||||| || Sbjct 4984 CAACGTTTGATTTTCGCTGGCAAACAATTGGAAGACGGCCGTACCTTGTCTGACTACAAC 4925 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 ||||||| |||||||| ||||| Sbjct 4924 ATCCAAAAAGAATCCACCCTTCA 4902 Score = 123 bits (136), Expect = 3e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| ||||||||||| || || ||| | || || ||| | | Sbjct 4420 ATGCAGATTTTCGTGAAGACTCTTACCGGCAAAACCATCACTTTGGAAGTCGAGCCCTCT 4361 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | || || ||||| || ||||| || || ||||| || || || Sbjct 4360 GACACCATTGAAAACGTCAAAGCCAAAATCCAAGACAAAGAAGGCATTCCCCCCGATCAA 4301 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || |||| || ||||| || || | || || | ||||||| || | || || ||| Sbjct 4300 CAACGATTAATCTTCGCTGGCAAACAGTTGGAAGACGGTCGTACCTTATCTGATTACAAT 4241 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 ||||||| |||||||| ||||| Sbjct 4240 ATCCAAAAAGAATCCACCCTTCA 4218 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || ||||| || || || || ||||| || ||| | || || || | Sbjct 4876 ATGCAAATTTTCGTCAAAACTCTCACGGGAAAGACGATCACTTTGGAAGTCGAACCTTCC 4817 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | || || |||||||| || || || || |||||||| || || Sbjct 4816 GACACTATTGAGAACGTCAAAGCCAAAATTCAAGATAAAGAAGGCATTCCTCCTGATCAA 4757 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| ||||||| || || || ||| | || || | ||||||||| | ||||| || Sbjct 4756 CAACGTTTAATTTTCGCCGGCAAACAATTGGAAGACGGTCGTACCCTGTCTGACTACAAC 4697 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||||||| || || ||| | ||| | ||||| || || || Sbjct 4696 ATTCAAAAGGAATCTACACTCCATTTGGTCCTCCGTCTCCGTGGCGG 4650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569878183134480