Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_028449.1 Length=63569 Score E Sequences producing significant alignments: (Bits) Value seq4723 500 4e-137 seq9686 430 5e-116 >seq4723 Length=43540 Score = 500 bits (554), Expect = 4e-137 Identities = 522/685 (76%), Gaps = 0/685 (0%) Strand=Plus/Minus Query 14107 CCATTGTTCTCCAAATACAAAACCAATTTCCGCCAGTGCTTCGTCCATTTTGTCGATGAA 14166 ||||||||| ||| || || || ||||| || || || || ||||| || |||||||| Sbjct 2279 CCATTGTTCCCCATATGTGAAGCCGATTTCAGCAAGCGCCTCATCCATCTTCTCGATGAA 2220 Query 14167 CTCCGGCACCATCTCATCAAAACTCGTCATGTACTTCTCATCCCGTTCGACCACGACATA 14226 |||||||||||||| |||||| | |||||| || || || |||||||||| ||||| Sbjct 2219 TTCCGGCACCATCTCGTCAAAATCAGCCATGTATTTGTCGTCACGTTCGACCAAGACATG 2160 Query 14227 ATGCAGGCCTTCACGCTTCATGCGTGGATCGTAGTTGGCGAAGTACCAGGCGTCCTTGTC 14286 || | |||||| || ||||||||||| ||||| ||||| ||| ||||||||| ||| | Sbjct 2159 GTGGATGCCTTCGCGTTTCATGCGTGGGTCGTAATTGGCAAAGAACCAGGCGTTCTTTCC 2100 Query 14287 TGTAACCCACATGCTGAATTGCACCTGGGCCATGTAAGCAGGCTTGATAGCGTCAAAGCC 14346 |||| |||||||||| | || |||||||||||||| || | |||||| || |||||||| Sbjct 2099 GGTAATCCACATGCTGTACTGAACCTGGGCCATGTACGCGGACTTGATGGCCTCAAAGCC 2040 Query 14347 GCCAAGCCGGAACTTCATGAAGTCGCGGGAAGTGAAGGGGCATTTAAGCTCAAGGCCGTT 14406 |||||||| ||| ||||||||||||||||| ||||| ||||| || || || ||||| Sbjct 2039 GCCAAGCCTGAATTTCATGAAGTCGCGGGAGGTGAAAGGGCACTTCAGTTCGAGGCCAAA 1980 Query 14407 ACCGTCGCTGCATAAACCGTCGGGAGAGCAGGCGGTGCGCATGCTTTCGTCACGAAAAAT 14466 ||| ||||| | ||||| ||||||||||| |||||||| | ||||| || || | Sbjct 1979 GTCGTTACTGCACAGCCCGTCAGGAGAGCAGGCCGTGCGCATATTCTCGTCGCGGAAGAG 1920 Query 14467 TATTGGCGTTTCCGAGACGGTAACATCCGCGATAAACTCGAAGAGGGCACGGGCATCATC 14526 || |||| || ||||||||| | | | |||||||| |||| || || || || Sbjct 1919 GATCGGCGACTCTATGACGGTAACGCCGGTCGTGAACTCGAAAAGGGTTCGCGCGTCTTC 1860 Query 14527 TTCGTATTGCTTTCCCCATGCGAGCGACTTAGCGTTAACTTCCGGTGCCACGCCAGTACA 14586 |||| |||| || |||||||| |||||||| |||||||||||||| | ||||| || || Sbjct 1859 TTCGAATTGTTTACCCCATGCCAGCGACTTGGCGTTAACTTCCGGCGATACGCCGGTGCA 1800 Query 14587 AACTTCAGCCAGCAGGGTGTGGAAGTATGACATTTTTGTATCAGGCCATTTGCTGCCGGA 14646 ||||| |||||||||||||||||||| |||||||| | || | ||| || | ||||| Sbjct 1799 GACTTCCGCCAGCAGGGTGTGGAAGTAAGACATTTTCATGTCCGTCCACTTCTTCCCGGA 1740 Query 14647 ACGTGGCTTTGCTATCACATTGTGAACTTCTGAAGCAGTGATAACACCGAGTCTCAGCTT 14706 || || || | || || ||| ||||| || || || || || ||||| | |||| | Sbjct 1739 GCGAGGTTTGGAAATTACGTTGCTGACTTCAGATGCCGTAATTACGCCGAGGCGCAGCCT 1680 Query 14707 GTGCCATCCATCATCGCCCTGGTCGAGGCTGGTAATATCCACGCCAGTTCGCTGGAGAAT 14766 ||||| | |||||||| || |||| | || | || | ||| || || || || Sbjct 1679 TTGCCACGCTTCATCGCCTTGCTCGACCGTTGTTACGTCAATGCCCGTCCGGGCCAGGAT 1620 Query 14767 AATTTCTGGTGTCATGACACGGCCT 14791 |||||| ||||||||| |||||| Sbjct 1619 AATTTCAGGTGTCATGCTGCGGCCT 1595 Score = 91.5 bits (100), Expect = 6e-14 Identities = 90/115 (78%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 17731 TCCTGCCAGTGTTGCCCGTTCTCACGCCGTTCTCGCTCTCGCGCGGGGATA-CTCTCTCA 17789 ||| ||||||||||||||||| |||||| | |||||||| || |||| || | ||||| Sbjct 42447 TCCCGCCAGTGTTGCCCGTTCCCACGCCTTAATCGCTCTCACGAGGGGGTAGCCTTCTCA 42388 Query 17790 TCGACCGGATCGCACCCGATGATACAGCACGTTTACGTGTAGGGGTCTAAACAGG 17844 | |||||||||| | | |||||| | | ||| | || |||||||||||||| Sbjct 42387 CCAACCGGATCGCCGCTGGTGATACGCCGCATTTGTGCGTTGGGGTCTAAACAGG 42333 >seq9686 Length=37809 Score = 430 bits (476), Expect = 5e-116 Identities = 949/1402 (68%), Gaps = 38/1402 (3%) Strand=Plus/Plus Query 22562 ATGCTGAAAATCACCCCAAACTTTGCTCAGGAGCGCGGTTTAAACCAGCTGCGGCACCAG 22621 ||||| || ||||| ||||| ||||| ||||| |||| | ||| |||||| | | Sbjct 35292 ATGCTTAACATCACACCAAATTTTGCACAGGAACGCGCGCTGAACATGCTGCGCCGTGAC 35351 Query 22622 TGGAAACAGCATCGCA-CGTACCTGATGTATGCACCCACTGGCTCTGGCAAAACTGGTCT 22680 ||||| | | || | ||| | |||||||| || || ||| |||||||| || || Sbjct 35352 TGGAAGGCGTA-CGAATCGTTCATGATGTATATGCCGACCGGCAGCGGCAAAACCGGGCT 35410 Query 22681 TGCAGCATTCGTCACTGCCGGAATGGTTGAACGTGGTATGCGGGTGATGTTTGTCTGTCC 22740 || || || || | | || |||| ||||||||||| || |||||||| || Sbjct 35411 GGCTGCTTTTGTTGCAGATGGTCTGGTGAGCCGTGGTATGCGCGTTCTGTTTGTCGCCCC 35470 Query 22741 GTACACCATCCTGCTGAACCAGACAGCGGAACGTTTCACCGAATACGGTTTGCCGTGGGA 22800 |||||||||||| | || ||||| || | || || | | || || | ||| || Sbjct 35471 TTACACCATCCTGATCAATCAGACCGCACAGCGCTTTGCTCAGTATGGCCTTCCGGAAGA 35530 Query 22801 AGAAATCAGTTTTGTATGGCGTGATCACCCTAACTATGACCCGTCACGACTGATTCAGAT 22860 | ||||| ||| | |||||||||||||| ||||||||||| | | ||| ||||| Sbjct 35531 CCAGATCAGCTTTATCTGGCGTGATCACCCGAACTATGACCCCAGCCTGCAGATCCAGAT 35590 Query 22861 TGCCAGTGCCGACACGCTGATCCGTCGTGAGTTTCCTGACAACATCGATCTGCTGATCAT 22920 |||||| ||||||||||||||||| || || || || | | |||||||||||||| || Sbjct 35591 TGCCAGCGCCGACACGCTGATCCGCCGGGAATTCCCGCAGGATATCGATCTGCTGATTAT 35650 Query 22921 CGATGAAGCACACATG---AAGCGTCGTGCGTTACTT---GAGGTTATCCGGGACA---- 22970 ||| ||||| || || || || || | || || ||| || ||| || Sbjct 35651 CGACGAAGCCCATCTGCGCAAACGCCG--CATT-CTGAAAGAGATTGAGCGGATCACCAC 35707 Query 22971 -GAGACATCAG----GGTTCTTGGACTTTCCGGCACCCCGTTCGCAGCCTGGATGGGGAA 23025 || || || |||| | || || ||||| |||||||| || | | ||||||| Sbjct 35708 GGAAACCAAAGCGAAGGTTATAGGCCTGTCCGGAACCCCGTTTTCACCTTTCCTGGGGAA 35767 Query 23026 GTACTACGAATGCCTGCTCAAGCCTACAACGATTCGTGAACTTATTCAGCGTGGTGATCT 23085 |||||| | ||||| |||| || || || || | || ||||| |||||||||||||| Sbjct 35768 TTACTACCAGCGCCTGATCAAACCGACCACCATCGGCGAGCTTATCCAGCGTGGTGATCT 35827 Query 23086 GAGCGATTACGAGTTTTTTGCCCCCTCAATGCCTGATCTGGCTGGCGTAAAAACCA--GT 23143 ||| |||||||||| | |||||| ||| ||| |||||| ||||| || || | | Sbjct 35828 GAGTAATTACGAGTTCTATGCCCCGACAAAGCCGGATCTGAAAGGCGTTAAGACGAAAGC 35887 Query 23144 AACACCGTATT-TGGACGGGATTACAACGAGGAGCAGCTCGCATCCATCATGGGGAGTTC 23202 | | | | ||| | || ||| |||||| ||| | || |||||| | | || Sbjct 35888 GTCGATGGAGTATGGCAGCGACTACGACGAGGCACAGTTGGCTGAAATCATGTGCGGATC 35947 Query 23203 GGATCTGGTTGGCGATATCGTTCGCAACTGGCTTGAGAATGGCGAGGATTTGCCGACGAT 23262 ||| ||||| ||||| || || |||||||| || || |||| | ||||| | Sbjct 35948 GGAGCTGGTCGGCGACATTGTCGATAACTGGCTGCGTAACGGGCAGGACCTTCCGACAGT 36007 Query 23263 CTGCTTCTGCGTGAATGTTGCGCATGCGAATTTTGTTACCCGTGAGTTTTTACAGGCCGG 23322 ||||| || ||| || || || || | || || |||| | || || Sbjct 36008 GGCGTTCTGTGTCAATAAGGCCCACGCCAACTACGTCACGATGCAGTTCAACAAAGCGGG 36067 Query 23323 TATTGGTGCAGAGGTGATGACGGCAGATACCCTCCATGATGAACGACAGGACATCATTCG 23382 | ||| ||||||||| ||| || || | || || |||||||| || || | Sbjct 36068 CGTGAATGCCGAGGTGATGGTGGCCGAAACGCCGCACGAAGAACGACAACTGATGATCCA 36127 Query 23383 CCGTTTTGAAGAGGGCGCGACCAAAATAATTGTCAACGTTGGTGTACTGGTTGCGGGATT 23442 ||| |||||| |||||||| ||||| ||| ||| ||| ||||||||||| ||||| || Sbjct 36128 CCGCTTTGAAACTGGCGCGACAAAAATCATTATCAGCGTCGGTGTACTGGTGGCGGGCTT 36187 Query 23443 TGACAGCGATGTTCGCTGCCTGATCTACGCCCGTCCGACAAAATCAGAAATCCGTTGGTT 23502 || || || ||||||||| |||| |||||||| || || ||| ||||| || ||||| Sbjct 36188 CGATAGTGACGTTCGCTGCGTGATTTACGCCCGCCCTACCAAAAGCGAAATTCGCTGGTT 36247 Query 23503 GCAGTGCA-TAGGTAGAGCGTTACGTACAGCCCCAGGTAAAAAACGTGCGT---TGATTT 23558 |||| ||| | || | | | || || || ||||| ||| | ||| | | || | Sbjct 36248 GCAG-GCACTGGGGCGTGGCCTTCGCACTGCACCAGGCAAAGA---TGCCTGTCTCATCT 36303 Query 23559 TTGACCATTCTGGTACGGTTCATCGGCTGGGCTTCCCCGAGGATATCGAGTATGACGAAC 23618 | || || ||| || || ||||| ||||| || || || | ||| ||||| ||| | Sbjct 36304 TCGATCACAGTGGCACCGTCCATCGCCTGGGATTTCCTGACGCTATTGAGTACAGCGACC 36363 Query 23619 TGCCGGGTAAAAATGACGGAATGAAAGCGTCTGCTGGCGGTG--GC-GAGGTTAAGGCTG 23675 | ||| |||| || || ||||||| | | |||| | ||| || |||| | || | Sbjct 36364 TCCCGTCGAAAAGCGATGGCATGAAAGAGGCCGCTGCCCGTGTAGCTGAGGATCGGGAGG 36423 Query 23676 AGAAACTTCCCAGAGAATGCCCCAAATGCCACTTCATGAAGCCTGCTGGTGTACACATGT 23735 | |||||||| | |||||||| |||||| |||||||| ||||| || || || | | Sbjct 36424 AAAAACTTCCGAAAGAATGCCATGGATGCCATTTCATGAAACCTGCAGGGGTGTACGTCT 36483 Query 23736 GTCCCAAATGTGGGTTTCGTCCTCTTGGTGGCGATGATGTGGCAACAGA-CCGCGATCGA 23794 | || |||||||| ||| || || | || || ||||| | ||| || ||| | || Sbjct 36484 GCCCGAAATGTGGTTTTAAGCCGCTGGTCGGTGAGGATGTTGAAACCGATACGC-AGCGG 36542 Query 23795 AAACTC-TCTCGCGTAAACAAAGGGAAACGCGAATACAGTCGCGAGGAAAAGCAGCGTTG 23853 || || || ||| | | |||| | | |||| ||| || ||| || Sbjct 36543 AATATCAAAAAGCTCAAAAAGGGCGAAAAG-GGTTACACCAAAACGGACAAACAGTCCTG 36601 Query 23854 GTGGAGTGAGATCAAGGGGTATCAGAATTACCGCAACGCGACGGGTAAACCCCTGAGTGA 23913 ||||||| ||||||| |||||| |||| ||| ||| ||||| | ||||| Sbjct 36602 GTGGAGTCAGATCAAATTTTATCAGCGCCACCGTGCATCGATGGGAAAACCTGTCAGTGA 36661 Query 23914 CGGATGGTGCGCTCATACCTAC 23935 || ||||| |||||||||||| Sbjct 36662 TGGGTGGTGTGCTCATACCTAC 36683 Score = 304 bits (336), Expect = 5e-78 Identities = 359/483 (74%), Gaps = 11/483 (2%) Strand=Plus/Plus Query 26247 ATGCGTGATATCCGGCAGGTTCTTGAGTGCTGGGGGGCATGGGCGGCAAATAACCATGAG 26306 ||||| || |||| ||||| | || ||||||| || ||||| || ||||| ||||| Sbjct 159 ATGCGAGACATCCAACAGGTATTAGAACGCTGGGGAGCGTGGGCAGCCAATAATCATGAA 218 Query 26307 GATGTGACCTGGTCACCCATTGCCGCCGGATTTAAGGGACTGATCCCCGAAAAAGTAAAA 26366 ||||| ||||| | || |||||||| |||||||| ||||| | || | | |||||| Sbjct 219 GATGTTGCCTGGGCGCCGATTGCCGCTGGATTTAAAGGACTCCTTCCGGCCAGGGTAAAA 278 Query 26367 TCACGCCCGCAGTGCTGTGACGATGATGCGATGGTGATATGCGGGTGTATAGCCCGCCTT 26426 || || || ||||| ||||| |||||||||||||| | |||||||| || ||| | || Sbjct 279 TCGCGGCCACAGTGTTGTGATGATGATGCGATGGTCGTCTGCGGGTGCATCGCCAGGCTG 338 Query 26427 TACCGGAACAATCGCGATCTGCATGACTTGCTGGTTGATTATTACGTGTTGGGGGAGACG 26486 || |||||||||||| |||| || ||||||| |||||||||||| ||||| |||| Sbjct 339 AACAAAAACAATCGCGATTTGCACGATCTGCTGGTGGATTATTACGTGATGGGGATGACG 398 Query 26487 TTCATGGCGCTGGCACGGAAACATGGGTGCTCTGACACCTGTATAGGTAAACGCCTTCAC 26546 || ||||||||||| || || ||||| ||||| || | ||| |||||| | || Sbjct 399 TTTATGGCGCTGGCTCGAAAGCATGGTTGCTCAGATGGCCATATCGGTAAAAAGTTACAA 458 Query 26547 AAAGCGGAGGGGATTGTTGAAGGCATGCTGATGATGCTGGGAGTGAGGCTTGAGATGGAT 26606 ||||| ||||| ||||||||||||||||||||||||| | || | || ||||||||| Sbjct 459 AAAGCCGAGGGAGTTGTTGAAGGCATGCTGATGATGCTCGATGTCCGACTGGAGATGGAT 518 Query 26607 CGGTATGTTGAGCGTGAATTGCCGGGAGGGAGAACCTCTGTATTTTATCAGCG-AAAAAA 26665 |||| ||| |||||| |||| | ||| ||| ||||| | |||| Sbjct 519 AGGTACGTTTCCCGTGAA---CCGGAATCCAGA----CTG---GCGGCCAGCGCATAAAA 568 Query 26666 TAGTTTACGATCGTAAAAATCTGCATATCATGATAAGAGTGGTTACATTGCCACGCTGCT 26725 |||||||| |||||||| | | ||||| || |||||||||| || | | ||| ||| Sbjct 569 AAGTTTACGTACGTAAAAAACCGGATATCCTGTTAAGAGTGGTCACTTCGACACAACGCT 628 Query 26726 TAA 26728 ||| Sbjct 629 TAA 631 Score = 98.7 bits (108), Expect = 4e-16 Identities = 187/275 (68%), Gaps = 3/275 (1%) Strand=Plus/Plus Query 24678 TCGGTGGCAATACGCCTGTATCCGGTGTCGTCCACTCTGGGGATAGCCGAGGGTATCGAA 24737 || || || || ||| ||| ||||||||| || || ||||| || || ||||| |||||| Sbjct 37535 TCTGTAGCCATCCGCATGTTTCCGGTGTCCTCAACGCTGGGAATCGCGGAGGGCATCGAA 37594 Query 24738 ACGGCGCTTTCATGCCGTCAAATCTTCCGCTGCAATGTGTGGTCAACAATGAACTCCGGT 24797 |||||||| || ||| ||| |||| | | ||| ||| | |||||| | | Sbjct 37595 ACGGCGCTGTCCTGCTATCAGATCTACGGGGTTAATACCTGGGCGGTGATGAACAGCAAT 37654 Query 24798 TTTATGGAGAAGTTCATTGCGCCACCTGGCGTTAATCACCTGATTATCTTTGCTGACAAT 24857 || ||| |||| ||| || || | || || || |||||| |||| |||||||| | Sbjct 37655 TTCATGAAGAAATTCCGCGCTCCGGCGGGGGTAAAACACCTGGTTATTTTTGCTGATATG 37714 Query 24858 GATGCGCA---CGGCGCAGGTCTGGCGGCTGCCTTTAAATGTGGGCATAAGAATCTCATG 24914 || ||| | | | |||| |||||| || || | |||| || ||||||||| Sbjct 37715 GACAAGCATTCTGCCACGGGTCAGGCGGCGGCGTTCGAGTGTGCTCACGCCAATCTCATG 37774 Query 24915 AGTTGCAATGACGTTGAGAAAGTCAGCATTCGCTG 24949 |||||| | | ||||||||| | ||||| Sbjct 37775 GCGAAAAATGACCTCGTTAAAGTCAGCGTACGCTG 37809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 203145781345570