Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_028449.1
Length=63569
Score E
Sequences producing significant alignments: (Bits) Value
seq4723 500 4e-137
seq9686 430 5e-116
>seq4723
Length=43540
Score = 500 bits (554), Expect = 4e-137
Identities = 522/685 (76%), Gaps = 0/685 (0%)
Strand=Plus/Minus
Query 14107 CCATTGTTCTCCAAATACAAAACCAATTTCCGCCAGTGCTTCGTCCATTTTGTCGATGAA 14166
||||||||| ||| || || || ||||| || || || || ||||| || ||||||||
Sbjct 2279 CCATTGTTCCCCATATGTGAAGCCGATTTCAGCAAGCGCCTCATCCATCTTCTCGATGAA 2220
Query 14167 CTCCGGCACCATCTCATCAAAACTCGTCATGTACTTCTCATCCCGTTCGACCACGACATA 14226
|||||||||||||| |||||| | |||||| || || || |||||||||| |||||
Sbjct 2219 TTCCGGCACCATCTCGTCAAAATCAGCCATGTATTTGTCGTCACGTTCGACCAAGACATG 2160
Query 14227 ATGCAGGCCTTCACGCTTCATGCGTGGATCGTAGTTGGCGAAGTACCAGGCGTCCTTGTC 14286
|| | |||||| || ||||||||||| ||||| ||||| ||| ||||||||| ||| |
Sbjct 2159 GTGGATGCCTTCGCGTTTCATGCGTGGGTCGTAATTGGCAAAGAACCAGGCGTTCTTTCC 2100
Query 14287 TGTAACCCACATGCTGAATTGCACCTGGGCCATGTAAGCAGGCTTGATAGCGTCAAAGCC 14346
|||| |||||||||| | || |||||||||||||| || | |||||| || ||||||||
Sbjct 2099 GGTAATCCACATGCTGTACTGAACCTGGGCCATGTACGCGGACTTGATGGCCTCAAAGCC 2040
Query 14347 GCCAAGCCGGAACTTCATGAAGTCGCGGGAAGTGAAGGGGCATTTAAGCTCAAGGCCGTT 14406
|||||||| ||| ||||||||||||||||| ||||| ||||| || || || |||||
Sbjct 2039 GCCAAGCCTGAATTTCATGAAGTCGCGGGAGGTGAAAGGGCACTTCAGTTCGAGGCCAAA 1980
Query 14407 ACCGTCGCTGCATAAACCGTCGGGAGAGCAGGCGGTGCGCATGCTTTCGTCACGAAAAAT 14466
||| ||||| | ||||| ||||||||||| |||||||| | ||||| || || |
Sbjct 1979 GTCGTTACTGCACAGCCCGTCAGGAGAGCAGGCCGTGCGCATATTCTCGTCGCGGAAGAG 1920
Query 14467 TATTGGCGTTTCCGAGACGGTAACATCCGCGATAAACTCGAAGAGGGCACGGGCATCATC 14526
|| |||| || ||||||||| | | | |||||||| |||| || || || ||
Sbjct 1919 GATCGGCGACTCTATGACGGTAACGCCGGTCGTGAACTCGAAAAGGGTTCGCGCGTCTTC 1860
Query 14527 TTCGTATTGCTTTCCCCATGCGAGCGACTTAGCGTTAACTTCCGGTGCCACGCCAGTACA 14586
|||| |||| || |||||||| |||||||| |||||||||||||| | ||||| || ||
Sbjct 1859 TTCGAATTGTTTACCCCATGCCAGCGACTTGGCGTTAACTTCCGGCGATACGCCGGTGCA 1800
Query 14587 AACTTCAGCCAGCAGGGTGTGGAAGTATGACATTTTTGTATCAGGCCATTTGCTGCCGGA 14646
||||| |||||||||||||||||||| |||||||| | || | ||| || | |||||
Sbjct 1799 GACTTCCGCCAGCAGGGTGTGGAAGTAAGACATTTTCATGTCCGTCCACTTCTTCCCGGA 1740
Query 14647 ACGTGGCTTTGCTATCACATTGTGAACTTCTGAAGCAGTGATAACACCGAGTCTCAGCTT 14706
|| || || | || || ||| ||||| || || || || || ||||| | |||| |
Sbjct 1739 GCGAGGTTTGGAAATTACGTTGCTGACTTCAGATGCCGTAATTACGCCGAGGCGCAGCCT 1680
Query 14707 GTGCCATCCATCATCGCCCTGGTCGAGGCTGGTAATATCCACGCCAGTTCGCTGGAGAAT 14766
||||| | |||||||| || |||| | || | || | ||| || || || ||
Sbjct 1679 TTGCCACGCTTCATCGCCTTGCTCGACCGTTGTTACGTCAATGCCCGTCCGGGCCAGGAT 1620
Query 14767 AATTTCTGGTGTCATGACACGGCCT 14791
|||||| ||||||||| ||||||
Sbjct 1619 AATTTCAGGTGTCATGCTGCGGCCT 1595
Score = 91.5 bits (100), Expect = 6e-14
Identities = 90/115 (78%), Gaps = 1/115 (1%)
Strand=Plus/Minus
Query 17731 TCCTGCCAGTGTTGCCCGTTCTCACGCCGTTCTCGCTCTCGCGCGGGGATA-CTCTCTCA 17789
||| ||||||||||||||||| |||||| | |||||||| || |||| || | |||||
Sbjct 42447 TCCCGCCAGTGTTGCCCGTTCCCACGCCTTAATCGCTCTCACGAGGGGGTAGCCTTCTCA 42388
Query 17790 TCGACCGGATCGCACCCGATGATACAGCACGTTTACGTGTAGGGGTCTAAACAGG 17844
| |||||||||| | | |||||| | | ||| | || ||||||||||||||
Sbjct 42387 CCAACCGGATCGCCGCTGGTGATACGCCGCATTTGTGCGTTGGGGTCTAAACAGG 42333
>seq9686
Length=37809
Score = 430 bits (476), Expect = 5e-116
Identities = 949/1402 (68%), Gaps = 38/1402 (3%)
Strand=Plus/Plus
Query 22562 ATGCTGAAAATCACCCCAAACTTTGCTCAGGAGCGCGGTTTAAACCAGCTGCGGCACCAG 22621
||||| || ||||| ||||| ||||| ||||| |||| | ||| |||||| | |
Sbjct 35292 ATGCTTAACATCACACCAAATTTTGCACAGGAACGCGCGCTGAACATGCTGCGCCGTGAC 35351
Query 22622 TGGAAACAGCATCGCA-CGTACCTGATGTATGCACCCACTGGCTCTGGCAAAACTGGTCT 22680
||||| | | || | ||| | |||||||| || || ||| |||||||| || ||
Sbjct 35352 TGGAAGGCGTA-CGAATCGTTCATGATGTATATGCCGACCGGCAGCGGCAAAACCGGGCT 35410
Query 22681 TGCAGCATTCGTCACTGCCGGAATGGTTGAACGTGGTATGCGGGTGATGTTTGTCTGTCC 22740
|| || || || | | || |||| ||||||||||| || |||||||| ||
Sbjct 35411 GGCTGCTTTTGTTGCAGATGGTCTGGTGAGCCGTGGTATGCGCGTTCTGTTTGTCGCCCC 35470
Query 22741 GTACACCATCCTGCTGAACCAGACAGCGGAACGTTTCACCGAATACGGTTTGCCGTGGGA 22800
|||||||||||| | || ||||| || | || || | | || || | ||| ||
Sbjct 35471 TTACACCATCCTGATCAATCAGACCGCACAGCGCTTTGCTCAGTATGGCCTTCCGGAAGA 35530
Query 22801 AGAAATCAGTTTTGTATGGCGTGATCACCCTAACTATGACCCGTCACGACTGATTCAGAT 22860
| ||||| ||| | |||||||||||||| ||||||||||| | | ||| |||||
Sbjct 35531 CCAGATCAGCTTTATCTGGCGTGATCACCCGAACTATGACCCCAGCCTGCAGATCCAGAT 35590
Query 22861 TGCCAGTGCCGACACGCTGATCCGTCGTGAGTTTCCTGACAACATCGATCTGCTGATCAT 22920
|||||| ||||||||||||||||| || || || || | | |||||||||||||| ||
Sbjct 35591 TGCCAGCGCCGACACGCTGATCCGCCGGGAATTCCCGCAGGATATCGATCTGCTGATTAT 35650
Query 22921 CGATGAAGCACACATG---AAGCGTCGTGCGTTACTT---GAGGTTATCCGGGACA---- 22970
||| ||||| || || || || || | || || ||| || ||| ||
Sbjct 35651 CGACGAAGCCCATCTGCGCAAACGCCG--CATT-CTGAAAGAGATTGAGCGGATCACCAC 35707
Query 22971 -GAGACATCAG----GGTTCTTGGACTTTCCGGCACCCCGTTCGCAGCCTGGATGGGGAA 23025
|| || || |||| | || || ||||| |||||||| || | | |||||||
Sbjct 35708 GGAAACCAAAGCGAAGGTTATAGGCCTGTCCGGAACCCCGTTTTCACCTTTCCTGGGGAA 35767
Query 23026 GTACTACGAATGCCTGCTCAAGCCTACAACGATTCGTGAACTTATTCAGCGTGGTGATCT 23085
|||||| | ||||| |||| || || || || | || ||||| ||||||||||||||
Sbjct 35768 TTACTACCAGCGCCTGATCAAACCGACCACCATCGGCGAGCTTATCCAGCGTGGTGATCT 35827
Query 23086 GAGCGATTACGAGTTTTTTGCCCCCTCAATGCCTGATCTGGCTGGCGTAAAAACCA--GT 23143
||| |||||||||| | |||||| ||| ||| |||||| ||||| || || | |
Sbjct 35828 GAGTAATTACGAGTTCTATGCCCCGACAAAGCCGGATCTGAAAGGCGTTAAGACGAAAGC 35887
Query 23144 AACACCGTATT-TGGACGGGATTACAACGAGGAGCAGCTCGCATCCATCATGGGGAGTTC 23202
| | | | ||| | || ||| |||||| ||| | || |||||| | | ||
Sbjct 35888 GTCGATGGAGTATGGCAGCGACTACGACGAGGCACAGTTGGCTGAAATCATGTGCGGATC 35947
Query 23203 GGATCTGGTTGGCGATATCGTTCGCAACTGGCTTGAGAATGGCGAGGATTTGCCGACGAT 23262
||| ||||| ||||| || || |||||||| || || |||| | ||||| |
Sbjct 35948 GGAGCTGGTCGGCGACATTGTCGATAACTGGCTGCGTAACGGGCAGGACCTTCCGACAGT 36007
Query 23263 CTGCTTCTGCGTGAATGTTGCGCATGCGAATTTTGTTACCCGTGAGTTTTTACAGGCCGG 23322
||||| || ||| || || || || | || || |||| | || ||
Sbjct 36008 GGCGTTCTGTGTCAATAAGGCCCACGCCAACTACGTCACGATGCAGTTCAACAAAGCGGG 36067
Query 23323 TATTGGTGCAGAGGTGATGACGGCAGATACCCTCCATGATGAACGACAGGACATCATTCG 23382
| ||| ||||||||| ||| || || | || || |||||||| || || |
Sbjct 36068 CGTGAATGCCGAGGTGATGGTGGCCGAAACGCCGCACGAAGAACGACAACTGATGATCCA 36127
Query 23383 CCGTTTTGAAGAGGGCGCGACCAAAATAATTGTCAACGTTGGTGTACTGGTTGCGGGATT 23442
||| |||||| |||||||| ||||| ||| ||| ||| ||||||||||| ||||| ||
Sbjct 36128 CCGCTTTGAAACTGGCGCGACAAAAATCATTATCAGCGTCGGTGTACTGGTGGCGGGCTT 36187
Query 23443 TGACAGCGATGTTCGCTGCCTGATCTACGCCCGTCCGACAAAATCAGAAATCCGTTGGTT 23502
|| || || ||||||||| |||| |||||||| || || ||| ||||| || |||||
Sbjct 36188 CGATAGTGACGTTCGCTGCGTGATTTACGCCCGCCCTACCAAAAGCGAAATTCGCTGGTT 36247
Query 23503 GCAGTGCA-TAGGTAGAGCGTTACGTACAGCCCCAGGTAAAAAACGTGCGT---TGATTT 23558
|||| ||| | || | | | || || || ||||| ||| | ||| | | || |
Sbjct 36248 GCAG-GCACTGGGGCGTGGCCTTCGCACTGCACCAGGCAAAGA---TGCCTGTCTCATCT 36303
Query 23559 TTGACCATTCTGGTACGGTTCATCGGCTGGGCTTCCCCGAGGATATCGAGTATGACGAAC 23618
| || || ||| || || ||||| ||||| || || || | ||| ||||| ||| |
Sbjct 36304 TCGATCACAGTGGCACCGTCCATCGCCTGGGATTTCCTGACGCTATTGAGTACAGCGACC 36363
Query 23619 TGCCGGGTAAAAATGACGGAATGAAAGCGTCTGCTGGCGGTG--GC-GAGGTTAAGGCTG 23675
| ||| |||| || || ||||||| | | |||| | ||| || |||| | || |
Sbjct 36364 TCCCGTCGAAAAGCGATGGCATGAAAGAGGCCGCTGCCCGTGTAGCTGAGGATCGGGAGG 36423
Query 23676 AGAAACTTCCCAGAGAATGCCCCAAATGCCACTTCATGAAGCCTGCTGGTGTACACATGT 23735
| |||||||| | |||||||| |||||| |||||||| ||||| || || || | |
Sbjct 36424 AAAAACTTCCGAAAGAATGCCATGGATGCCATTTCATGAAACCTGCAGGGGTGTACGTCT 36483
Query 23736 GTCCCAAATGTGGGTTTCGTCCTCTTGGTGGCGATGATGTGGCAACAGA-CCGCGATCGA 23794
| || |||||||| ||| || || | || || ||||| | ||| || ||| | ||
Sbjct 36484 GCCCGAAATGTGGTTTTAAGCCGCTGGTCGGTGAGGATGTTGAAACCGATACGC-AGCGG 36542
Query 23795 AAACTC-TCTCGCGTAAACAAAGGGAAACGCGAATACAGTCGCGAGGAAAAGCAGCGTTG 23853
|| || || ||| | | |||| | | |||| ||| || ||| ||
Sbjct 36543 AATATCAAAAAGCTCAAAAAGGGCGAAAAG-GGTTACACCAAAACGGACAAACAGTCCTG 36601
Query 23854 GTGGAGTGAGATCAAGGGGTATCAGAATTACCGCAACGCGACGGGTAAACCCCTGAGTGA 23913
||||||| ||||||| |||||| |||| ||| ||| ||||| | |||||
Sbjct 36602 GTGGAGTCAGATCAAATTTTATCAGCGCCACCGTGCATCGATGGGAAAACCTGTCAGTGA 36661
Query 23914 CGGATGGTGCGCTCATACCTAC 23935
|| ||||| ||||||||||||
Sbjct 36662 TGGGTGGTGTGCTCATACCTAC 36683
Score = 304 bits (336), Expect = 5e-78
Identities = 359/483 (74%), Gaps = 11/483 (2%)
Strand=Plus/Plus
Query 26247 ATGCGTGATATCCGGCAGGTTCTTGAGTGCTGGGGGGCATGGGCGGCAAATAACCATGAG 26306
||||| || |||| ||||| | || ||||||| || ||||| || ||||| |||||
Sbjct 159 ATGCGAGACATCCAACAGGTATTAGAACGCTGGGGAGCGTGGGCAGCCAATAATCATGAA 218
Query 26307 GATGTGACCTGGTCACCCATTGCCGCCGGATTTAAGGGACTGATCCCCGAAAAAGTAAAA 26366
||||| ||||| | || |||||||| |||||||| ||||| | || | | ||||||
Sbjct 219 GATGTTGCCTGGGCGCCGATTGCCGCTGGATTTAAAGGACTCCTTCCGGCCAGGGTAAAA 278
Query 26367 TCACGCCCGCAGTGCTGTGACGATGATGCGATGGTGATATGCGGGTGTATAGCCCGCCTT 26426
|| || || ||||| ||||| |||||||||||||| | |||||||| || ||| | ||
Sbjct 279 TCGCGGCCACAGTGTTGTGATGATGATGCGATGGTCGTCTGCGGGTGCATCGCCAGGCTG 338
Query 26427 TACCGGAACAATCGCGATCTGCATGACTTGCTGGTTGATTATTACGTGTTGGGGGAGACG 26486
|| |||||||||||| |||| || ||||||| |||||||||||| ||||| ||||
Sbjct 339 AACAAAAACAATCGCGATTTGCACGATCTGCTGGTGGATTATTACGTGATGGGGATGACG 398
Query 26487 TTCATGGCGCTGGCACGGAAACATGGGTGCTCTGACACCTGTATAGGTAAACGCCTTCAC 26546
|| ||||||||||| || || ||||| ||||| || | ||| |||||| | ||
Sbjct 399 TTTATGGCGCTGGCTCGAAAGCATGGTTGCTCAGATGGCCATATCGGTAAAAAGTTACAA 458
Query 26547 AAAGCGGAGGGGATTGTTGAAGGCATGCTGATGATGCTGGGAGTGAGGCTTGAGATGGAT 26606
||||| ||||| ||||||||||||||||||||||||| | || | || |||||||||
Sbjct 459 AAAGCCGAGGGAGTTGTTGAAGGCATGCTGATGATGCTCGATGTCCGACTGGAGATGGAT 518
Query 26607 CGGTATGTTGAGCGTGAATTGCCGGGAGGGAGAACCTCTGTATTTTATCAGCG-AAAAAA 26665
|||| ||| |||||| |||| | ||| ||| ||||| | ||||
Sbjct 519 AGGTACGTTTCCCGTGAA---CCGGAATCCAGA----CTG---GCGGCCAGCGCATAAAA 568
Query 26666 TAGTTTACGATCGTAAAAATCTGCATATCATGATAAGAGTGGTTACATTGCCACGCTGCT 26725
|||||||| |||||||| | | ||||| || |||||||||| || | | ||| |||
Sbjct 569 AAGTTTACGTACGTAAAAAACCGGATATCCTGTTAAGAGTGGTCACTTCGACACAACGCT 628
Query 26726 TAA 26728
|||
Sbjct 629 TAA 631
Score = 98.7 bits (108), Expect = 4e-16
Identities = 187/275 (68%), Gaps = 3/275 (1%)
Strand=Plus/Plus
Query 24678 TCGGTGGCAATACGCCTGTATCCGGTGTCGTCCACTCTGGGGATAGCCGAGGGTATCGAA 24737
|| || || || ||| ||| ||||||||| || || ||||| || || ||||| ||||||
Sbjct 37535 TCTGTAGCCATCCGCATGTTTCCGGTGTCCTCAACGCTGGGAATCGCGGAGGGCATCGAA 37594
Query 24738 ACGGCGCTTTCATGCCGTCAAATCTTCCGCTGCAATGTGTGGTCAACAATGAACTCCGGT 24797
|||||||| || ||| ||| |||| | | ||| ||| | |||||| | |
Sbjct 37595 ACGGCGCTGTCCTGCTATCAGATCTACGGGGTTAATACCTGGGCGGTGATGAACAGCAAT 37654
Query 24798 TTTATGGAGAAGTTCATTGCGCCACCTGGCGTTAATCACCTGATTATCTTTGCTGACAAT 24857
|| ||| |||| ||| || || | || || || |||||| |||| |||||||| |
Sbjct 37655 TTCATGAAGAAATTCCGCGCTCCGGCGGGGGTAAAACACCTGGTTATTTTTGCTGATATG 37714
Query 24858 GATGCGCA---CGGCGCAGGTCTGGCGGCTGCCTTTAAATGTGGGCATAAGAATCTCATG 24914
|| ||| | | | |||| |||||| || || | |||| || |||||||||
Sbjct 37715 GACAAGCATTCTGCCACGGGTCAGGCGGCGGCGTTCGAGTGTGCTCACGCCAATCTCATG 37774
Query 24915 AGTTGCAATGACGTTGAGAAAGTCAGCATTCGCTG 24949
|||||| | | ||||||||| | |||||
Sbjct 37775 GCGAAAAATGACCTCGTTAAAGTCAGCGTACGCTG 37809
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 203145781345570
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