Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq5375 136 3e-27 >seq5375 Length=21980 Score = 136 bits (150), Expect = 3e-27 Identities = 241/346 (70%), Gaps = 4/346 (1%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||||||| |||||||| || || || | | || |||||||| || || || Sbjct 1124 AGGCCAGTGACGTGGGCCATCATATATGTTAGCAAGGCATAACTGGCGATATTGAAAGGC 1183 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 ||||| | ||||| || | || | ||| || | || || || ||||| |||| | | Sbjct 1184 ACCCCTAAGCCCATATCAGCTGAACGCTGATACATTTGGCATGAAAGCTCGCCGTTGGCC 1243 Query 30062 ACGTAAAACTGACACATGGC-GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGG 30120 || |||||||| | | ||| |||||| |||||||| ||||| || ||| | || Sbjct 1244 ACATAAAACTG-CGCTAGGCAGTGGCAAGGAGGAAGTGCCATTTGGGGTAAGGCGCAAGG 1302 Query 30121 GTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGC 30180 ||||||||||| | | ||||| | || ||||||||| | ||||| || | Sbjct 1303 GTTCCAGGCGCTTAAAACCATGCGGCGATCATCTGGGTTGGTTTTGATGGTGTGGAGAAT 1362 Query 30181 GTTTTGCAGCTGATCCAC-CCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTG 30239 || || ||| |||||||| || | | | || ||||| ||||| | ||| || | Sbjct 1363 GTGTTCCAGTTGATCCACACCTTGTTGGCTA-TAATCTGCATGCATGTTGGAGTATTCGG 1421 Query 30240 CTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCC 30285 | |||||||| | ||||||||| ||||| || || |||| ||| || Sbjct 1422 CGCCGAAATGACGCCACTGGAAGCCGTAGACGGGACCCAAGTCGCC 1467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406010170769868