Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq6222 122 5e-23 >seq6222 Length=12937 Score = 122 bits (134), Expect = 5e-23 Identities = 170/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC 34535 || |||||| | |||||||| |||||||||||||| ||||| || || ||||| || Sbjct 3734 GTTGCCGCCACGGAGACGCAAGACCAAATGGAGAGTTGATTCCTTCTGGATATTATAGTC 3793 Query 34536 TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGG 34595 || | || || | ||||| | ||| |||||||| || || ||||| || || || || Sbjct 3794 GGACAAGGTACGACCATCTTCCAATTGCTTACCGGCGAAGATCAAACGTTGCTGATCGGG 3853 Query 34596 CGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTC-TTCGCTC 34653 || | || ||||||||| ||| ||| | ||| ||| | ||| ||||| || | Sbjct 3854 AGGAATACCTTCCTTGTCT-TGAATTTTGGCTTTGACGTTTTCAATGGTGTCGGACGGT- 3911 Query 34654 TCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||||| ||| || ||||| || || || |||||||| || || ||||| Sbjct 3912 TCAACTTCCAAGGTGATGGTTTTGCCCGTCAAGGTTTTCACGAAGATTTGCAT 3964 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||| | ||||||||||| || |||||||||||||| || || || Sbjct 4650 CCGCCACGGAGACGGAGGACCAAATGGAGTGTAGATTCCTTTTGAATGTTGTAGTCAGAC 4709 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| | |||||| ||||| || |||||||| ||||| || || || Sbjct 4710 AGGGTACGACCGTCTTCCAATTGTTTGCCGGCGAAAATTAAACGTTGTTGATCAGGAGGA 4769 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || || || ||| ||| ||| | ||| ||| | ||| ||||| || || Sbjct 4770 ATGCCTTCTTTATCT-TGAATTTTGGCTTTGACGTTCTCAATAGTGTCGGAAGGTTCGAC 4828 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || ||||| || || || | ||||| || ||||| ||||| Sbjct 4829 TTCCAAAGTGATCGTCTTTCCCGTGAGAGTTTTGACGAAAATTTGCAT 4876 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||||| | ||| | ||||| || || ||| || ||||| || || ||||| || Sbjct 4194 CCGCCTCGCAAACGTAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGAT 4253 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || ||||||| | ||||| || || || ||||| || ||||| || || || Sbjct 4254 AAGGTACGACCGTCTTCCAACTGTTTGCCAGCGAAGATTAATCGTTGTTGATCGGGGGGA 4313 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| ||| ||| | ||| ||| | ||| ||||| | ||| || Sbjct 4314 ATGCCTTCTTTGTCTTGGAT-TTTGGCTTTGACGTTTTCAATGGTGTCAGAGGGCTCGAC 4372 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || ||||| ||||| | || ||||| ||||||||||| Sbjct 4373 TTCCAAAGTGATGGTTTTGCCGGTAAGAGTCTTCACGAAAATCTGCAT 4420 Score = 91.5 bits (100), Expect = 9e-14 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| || | ||| ||||| || || || ||||| || || || | || || Sbjct 3975 AGACGCAGGACTAGATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCGGACAAAGTGCGA 4034 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | || || |||||||| || ||||| ||||| || || || | || ||| Sbjct 4035 CCATCTTCTAACTGCTTGCCGGCAAAAATCAAACGTTGTTGATCGGGAGGAATGCCTTCC 4094 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| ||| | || ||| | ||| |||||| || ||||||| || Sbjct 4095 TTGTCTTGGAT-TTTAGCCTTGACGTTCTCAATGGTGTCTGATGGTTCGACTTCCAAAGT 4153 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || | ||||| |||||||||||||| Sbjct 4154 GATCGTCTTGCCAGTGAGGGTTTTTACAAAAATCTGCAT 4192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314497041282557