Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq6222 194 1e-44 seq3468 138 1e-27 seq1928 98.7 9e-16 seq957 84.2 2e-11 >seq6222 Length=12937 Score = 194 bits (214), Expect = 1e-44 Identities = 181/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || |||||||| || || ||| | || ||| | ||||| ||||| ||| Sbjct 4876 ATGCAAATTTTCGTCAAAACTCTCACGGGAAAGACGATCACTTTGGAAGTCGAACCTTCC 4817 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| |||||| ||||||||||| ||||||||||| || || |||||| Sbjct 4816 GACACTATTGAGAACGTCAAAGCCAAAATTCAAGATAAAGAAGGCATTCCTCCTGATCAA 4757 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | |||||||||||||||||||||| || ||| | || || |||||| Sbjct 4756 CAACGTTTAATTTTCGCCGGCAAACAATTGGAAGACGGTCGTACCCTGTCTGACTACAAC 4697 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| || || | |||||||| | ||| | || || || || Sbjct 4696 ATTCAAAAGGAATCTACACTCCATTTGGTCCTCCGTCTCCGTGGCGGTAT 4647 Score = 183 bits (202), Expect = 3e-41 Identities = 179/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || ||||| |||| |||||| | ||||| | ||||| || ||||| Sbjct 5105 CATGCAAATTTTCGTCAAAACCTTGACTGGCAAGACCATTACCTTGGAAGTTGAGCCGTC 5046 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | ||||| | ||||| ||||| ||||||||||||||||| || |||||||| Sbjct 5045 CGACACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGCATTCCTCCCGATCA 4986 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| ||||| || | ||| |||||||||||||||||| | ||| | || || ||||| Sbjct 4985 ACAACGTTTGATTTTCGCTGGCAAACAATTGGAAGACGGCCGTACCTTGTCTGACTACAA 4926 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| ||||| || || ||| | || |||||| | |||||||| || || || Sbjct 4925 CATCCAAAAAGAATCCACCCTTCACTTGGTTCTCCGTTTGCGAGGCGGTAT 4875 Score = 181 bits (200), Expect = 9e-41 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| |||||||| | || ||| | ||||| || || || Sbjct 4420 ATGCAGATTTTCGTGAAGACTCTTACCGGCAAAACCATCACTTTGGAAGTCGAGCCCTCT 4361 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| ||||| ||||||||||||||||| || ||||||||| Sbjct 4360 GACACCATTGAAAACGTCAAAGCCAAAATCCAAGACAAAGAAGGCATTCCCCCCGATCAA 4301 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || ||||| | ||| |||||||| ||||||||| || ||| | || |||||||| Sbjct 4300 CAACGATTAATCTTCGCTGGCAAACAGTTGGAAGACGGTCGTACCTTATCTGATTACAAT 4241 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| || || ||| | || |||||| | |||||||| || || || Sbjct 4240 ATCCAAAAAGAATCCACCCTTCACTTGGTTCTACGTTTGCGAGGCGGTAT 4191 Score = 179 bits (198), Expect = 3e-40 Identities = 180/231 (78%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || ||||| |||||| ||||||| || ||||| || || || Sbjct 5332 ATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACTATTACCCTCGAAGTAGAGCCTTCG 5273 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | |||||| |||||||||||||||||||| || || || || || Sbjct 5272 GATACCATTGAAAACGTCAAAGCCAAAATTCAAGACAAAGAAGGTATCCCCCCTGACCAG 5213 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 || |||||||| | ||| ||||| ||||||||||| || || |||| || |||||||| Sbjct 5212 CAACGTTTAATTTTCGCTGGCAAGCAATTGGAAGATGGT-CGTACGTTGTCAGATTACAA 5154 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| || || || ||| | |||||||| |||||| | || |||||||| Sbjct 5153 CATTCAGAAAGAATCCACCCTGCATTTGGTATTGCGTCTCCGTGGTGGCAT 5103 Score = 167 bits (184), Expect = 2e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||| |||||||||| | || ||| | ||||| || ||||| Sbjct 4648 ATGCAAATCTTCGTGAAGACTTTGACCGGCAAAACCATCACTTTGGAAGTTGAGCCGTCT 4589 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| || || ||||||||||||||||| || || || ||| Sbjct 4588 GACACCATTGAAAACGTCAAAGCCAAGATCCAAGACAAAGAAGGCATTCCCCCTGACCAA 4529 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||||||||| ||| |||||||| || ||| | || |||||||| Sbjct 4528 CAACGTCTCATCTTCGCCGGCAAGCAACTGGAAGACGGTCGTACCTTGTCTGATTACAAT 4469 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| || || ||| | || |||||| |||||||||| || || || Sbjct 4468 ATCCAAAAAGAATCCACCCTTCACTTGGTTCTGCGTTTGCGAGGCGGTAT 4419 Score = 163 bits (180), Expect = 2e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||||||||| || || |||||| | || ||| | ||||| ||||| || Sbjct 4192 ATGCAGATTTTTGTAAAAACCCTCACTGGCAAGACGATCACTTTGGAAGTCGAACCATCA 4133 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| ||||| |||||||| |||||||| || ||||||||| Sbjct 4132 GACACCATTGAGAACGTCAAGGCTAAAATCCAAGACAAGGAAGGCATTCCTCCCGATCAA 4073 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | |||||||| || || ||||| || || | ||||| |||||| Sbjct 4072 CAACGTTTGATTTTTGCCGGCAAGCAGTTAGAAGATGGTCGCACTTTGTCCGACTACAAC 4013 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || || || | ||| | || ||||| |||| ||||| || Sbjct 4012 ATCCAGAAAGAATCTACTCTTCATCTAGTCCTGCGTCTGCGTGGTGGTAT 3963 Score = 161 bits (178), Expect = 9e-35 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| |||| ||||| | || || | ||||| ||||||||| Sbjct 3964 ATGCAAATCTTCGTGAAAACCTTGACGGGCAAAACCATCACCTTGGAAGTTGAACCGTCC 3905 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| |||||||||||||| ||||| || || |||||||| Sbjct 3904 GACACCATTGAAAACGTCAAAGCCAAAATTCAAGACAAGGAAGGTATTCCTCCCGATCAG 3845 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | |||||| || ||||||||||| || ||| | ||||| || || Sbjct 3844 CAACGTTTGATCTTCGCCGGTAAGCAATTGGAAGATGGTCGTACCTTGTCCGACTATAAT 3785 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 || || ||||| || || | |||||||| |||||| | || || |||| Sbjct 3784 ATCCAGAAGGAATCAACTCTCCATTTGGTCTTGCGTCTCCGTGGCGGCA 3736 >seq3468 Length=50068 Score = 138 bits (152), Expect = 1e-27 Identities = 147/193 (76%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| || || || ||| |||| || ||| | || || ||||| || || || | Sbjct 38276 CCATGCAGATCTTCGTCAAGACTTTGACGGGTAAGACCATCACCCTTGAGGTCGAGCCTT 38335 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||| | || || | || || ||||| |||||||| ||||| || || ||||||| Sbjct 38336 CAGACACTATCGAAAATGTTAAGGCCAAAATCCAAGACAAGGAAGGAATCCCCCCCGATC 38395 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 |||| ||||| || | |||||||||||||||||||||| | ||| |||| || |||| Sbjct 38396 AACAACGTTTGATCTTCGCCGGCAAACAATTGGAAGACGGCAGGACTCTTTCTGACTACA 38455 Query 27166 ACATTCA-AAAGG 27177 |||| || ||||| Sbjct 38456 ACATCCAGAAAGG 38468 >seq1928 Length=11577 Score = 98.7 bits (108), Expect = 9e-16 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 135476 TGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCATG 135535 |||||||| | ||| ||| | | | |||||| |||||||| || || ||||||||| Sbjct 119 TGGAACGCATCCCAAATTCAGTTGACGAAAGAAGGGAAAATGCATGGTTTCATGCGCATG 178 Query 135536 TATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACGCA 135595 || ||||| ||||| || ||||||||| | || ||||| | || ||| | || || Sbjct 179 TACTGGGCGAAAAAAATCTTGGAATGGACAGCGTCGCCAGAGGATGCGTTGGAAGCTGCC 238 Query 135596 ATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGT 135652 || | | |||||| | || || || |||||||| || | |||||||| || ||| Sbjct 239 ATCTACCTCAATGATAAGTATAGCTTGGATGGACGGGACCCGAATGGCTATGTTGGT 295 >seq957 Length=45873 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 27089 AGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTC 27148 ||| || || ||||||||||||||||| || | ||||||||| ||||||||||| | Sbjct 36291 AGGTATTCCTCCCGATCAACAGCGTTTGATCTTCGCCGGCAAGCAATTGGAAGATGGACG 36350 Query 27149 GACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCG 27208 ||| | || || || ||||| || ||||| || || || || ||||| | || | || Sbjct 36351 CACCTTGTCGGACTATAACATCCAGAAGGAATCCACTTTGCACTTGGTGCTCCGCCTTCG 36410 Query 27209 GGGTGG 27214 ||||| Sbjct 36411 TGGTGG 36416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434588791654080