Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_028657.1 Length=60919 Score E Sequences producing significant alignments: (Bits) Value seq9686 226 1e-54 >seq9686 Length=37809 Score = 226 bits (250), Expect = 1e-54 Identities = 434/634 (68%), Gaps = 8/634 (1%) Strand=Plus/Minus Query 45764 CTTGGTCGGATCATGCGACTCGCACTGTTGGCGGCTCACCTCTATACCGAATTCTTCTCG 45823 |||||||||||| ||||| ||| ||| || ||| | | || || ||||| |||| | | Sbjct 5691 CTTGGTCGGATCGTGCGATTCGGCCTGCTGCCGGGTGATCTTGATGCCGAACTCTTTTTG 5632 Query 45824 GACAGATGCCGCCACCTGTGCGGGGGTATCGAAACAGGCCAGGGCCTGCACGATGAAGGC 45883 ||||| | |||| || | || || || | || || || ||| ||||||||||| Sbjct 5631 GACAGTCTCGACCACTTGCGATGGCGTGTCATAGCACGCAAGCAACTGAACGATGAAGGC 5572 Query 45884 TTTCACCTCATTGTTCAGGACTGCCATATGGGCTCAC--TCCGTCTTAGCTCTGTCATGG 45941 |||||| ||| || | | |||||| |||| | ||||||| | ||| | Sbjct 5571 TTTCACATCAGGTTTTAATGCAGCCATAAA---TCACCATTCGTCTTATA-CAGTCCAGT 5516 Query 45942 ATCAGGCCGACTTG-AGCAGACAGGTTCCGCAGGCCCTCGCGATGTTGATCTTTGCCACT 46000 ||| ||| | | | |||| || || ||||| || || || || | || | || || Sbjct 5515 TTCAAGCC-AGTCGCAGCATGCAAGTCCCGCAAGCTCTGGCAATATCGAGATGAGCAACC 5457 Query 46001 TCTGGCGGCTTGCTGGCAGCGTCGATCATCTCTTGCACTGCCTCACTGGCGCCGTAGCGG 46060 || | |||| | || || || ||||| || |||||| | || || ||||||||| Sbjct 5456 TCCGCTGGCTGATTCGCCGCATCAATCATTTCCTGCACTTCACGGCTCGCACCGTAGCGG 5397 Query 46061 CGCACCACCCCGACGAACTCATTCACGTCATGCCCGCGCAAGTAGAGGCTCGGCATCCCG 46120 || ||||| ||||| ||||| | ||| || || || |||| | || | ||||| || Sbjct 5396 CGAACCACACCGACAAACTCTTCCACATCGTGGCCACGCAGCTTCAGTTTTGGCATGCCT 5337 Query 46121 TCCGAGCTGAATTTTGGCGCGCCGAACTCGTCTGTCTTCTGGGCTATGTGAAATAGTTCA 46180 ||| |||| || |||||||| || || |||||| |||| |||||| | || || Sbjct 5336 TCCTGCGTGAACTTCGGCGCGCCAAATTCATCTGTCGCCTGGCTAATGTGATAAAGCTCG 5277 Query 46181 TGCTCCAAAAGCGAGCAAAACTCCACGTCCGAACACTGCGAGCAGTAGTCAGCCGCCAGG 46240 ||||| || || | ||| ||||||| || ||||| ||||| ||||| || || ||||| Sbjct 5276 TGCTCTAACAGGGCGCAGAACTCCAGATCGGAACATTGCGAACAGTAATCTGCTGCCAGC 5217 Query 46241 GTGATGAGGAAGTCCGGCTCTTCACCAAACCATTCACGCATCTGCTGCTCTTGCCGGGCC 46300 ||||||| ||| | |||| | || |||||||| ||| |||||||| || || Sbjct 5216 GTGATGATGAACTGCGGCACCCTGCCGAACCATTCGTACATTTGCTGCTCCATGCGCGCT 5157 Query 46301 TTCTGCCAACCTCCAGCGCGGAACATGACCTGCTCGGCCTGGCCCAGGACATAACGGCCT 46360 |||||||| || || || || | | || | || ||||| || || || |||| ||| Sbjct 5156 TTCTGCCATCCACCTGCCCGCATCGCAACTTCTTCCGCCTGCCCAAGAACGGAACGCCCT 5097 Query 46361 TGCTTGGTGAATCCAGAGGATGCCCAGAGGACGC 46394 | ||| ||| | || |||||||||| || Sbjct 5096 TTCTTCTCGAAAGCGTTCGACGCCCAGAGGAAGC 5063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194678936142338