Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_028660.1 Length=61035 Score E Sequences producing significant alignments: (Bits) Value seq4723 500 3e-137 seq9686 453 4e-123 >seq4723 Length=43540 Score = 500 bits (554), Expect = 3e-137 Identities = 522/685 (76%), Gaps = 0/685 (0%) Strand=Plus/Plus Query 23463 AGGCCGTGTCATGACACCAGAAATTATTCTCCAGCGAACTGGCGTGGATATTACCAGCCT 23522 |||||| ||||||||| |||||||| || || || ||| | || | || | | Sbjct 1595 AGGCCGCAGCATGACACCTGAAATTATCCTGGCCCGGACGGGCATTGACGTAACAACGGT 1654 Query 23523 CGACCAGGGCGATGATGGATGGCACAAGCTGAGACTCGGTGTTATCACTGCTTCAGAAGT 23582 ||| || |||||||| | ||||| | |||| | ||||| || || || || || ||||| Sbjct 1655 CGAGCAAGGCGATGAAGCGTGGCAAAGGCTGCGCCTCGGCGTAATTACGGCATCTGAAGT 1714 Query 23583 TCACAATGTGATAGCAAAGCCACGTTCCGGCAGCAAATGGCCTGATACAAAAATGTCATA 23642 ||| || || | || || || ||||| | || ||| | || | |||||||| || Sbjct 1715 CAGCAACGTAATTTCCAAACCTCGCTCCGGGAAGAAGTGGACGGACATGAAAATGTCTTA 1774 Query 23643 CTTCCACACCCTGCTGGCTGAAGTTTGTACTGGCGTGGCACCGGAAGTTAACGCTAAGTC 23702 |||||||||||||||||| ||||| || || ||||| | |||||||||||||| ||||| Sbjct 1775 CTTCCACACCCTGCTGGCGGAAGTCTGCACCGGCGTATCGCCGGAAGTTAACGCCAAGTC 1834 Query 23703 GCTCGCATGGGGAAAGCAATACGAAGATGATGCCCGTGCCCTCTTCGAATTTATCGCGGA 23762 ||| |||||||| || |||| |||||| || || || |||| ||||| || | | | Sbjct 1835 GCTGGCATGGGGTAAACAATTCGAAGAAGACGCGCGAACCCTTTTCGAGTTCACGACCGG 1894 Query 23763 TGTTACCGTCTCGGAAACGCCAATAATTTTTCGTGACGAAAGCATGCGCACCGCCTGCTC 23822 ||||||||| || |||| || | || || ||||| | |||||||| |||||||| Sbjct 1895 CGTTACCGTCATAGAGTCGCCGATCCTCTTCCGCGACGAGAATATGCGCACGGCCTGCTC 1954 Query 23823 TCCCGACGGTTTATGCAGCGACGGTAACGGTCTTGAGCTTAAATGCCCTTTTACTTCCCG 23882 ||| ||||| | ||||| ||| || || || || || |||||||| || ||||| Sbjct 1955 TCCTGACGGGCTGTGCAGTAACGACTTTGGCCTCGAACTGAAGTGCCCTTTCACCTCCCG 2014 Query 23883 CGACTTCATGAAATTCCGGCTTGGCGGCTTTGACGCTATCAAGCCTGCTTACATGGCCCA 23942 |||||||||||||||| |||||||||||||||| || |||||| | || ||||||||||| Sbjct 2015 CGACTTCATGAAATTCAGGCTTGGCGGCTTTGAGGCCATCAAGTCCGCGTACATGGCCCA 2074 Query 23943 GGTGCAATTCAGCATGTGGGTTACAGACAAGGACGCCTGGTACTTCGCCAACTACGACCC 24002 ||| || | |||||||||| |||| | ||| ||||||||| ||| ||||| |||||||| Sbjct 2075 GGTTCAGTACAGCATGTGGATTACCGGAAAGAACGCCTGGTTCTTTGCCAATTACGACCC 2134 Query 24003 ACGCATGAAGCGTGAAGGCCTGCATTATGTCGTGGTCGAGCGGGATGAAAAGTACATGGC 24062 ||||||||| || |||||| | || ||||| ||||||| || || || || |||||||| Sbjct 2135 ACGCATGAAACGCGAAGGCATCCACCATGTCTTGGTCGAACGTGACGACAAATACATGGC 2194 Query 24063 GAGTTTTGATGAGATGGTGCCGGAGTTCATCGACAAAATGGACGAAGCACTGGCGGAAAT 24122 |||||| |||||||||||||| |||||||| || ||||| || || || || ||||| Sbjct 2195 TGATTTTGACGAGATGGTGCCGGAATTCATCGAGAAGATGGATGAGGCGCTTGCTGAAAT 2254 Query 24123 TGGTTTTGTATTTGGAGAACAATGG 24147 || || || ||| ||||||||| Sbjct 2255 CGGCTTCACATATGGGGAACAATGG 2279 Score = 111 bits (122), Expect = 6e-20 Identities = 479/736 (65%), Gaps = 35/736 (5%) Strand=Plus/Plus Query 33051 ACAGTGAACTATTACATGACAACAACAGC-CGGAATGTT-CAGCTTTGCCGCCGAAAACG 33108 ||||||||| | |||||||| | | | | || | |||| ||| |||| | || || | Sbjct 7415 ACAGTGAACAACTACATGACCA-ACCTGTACGCAGTGTTTCAG-TTTGGCATGGAGAATG 7472 Query 33109 GGTATCTGGAGAAAAACCCGTTTAATTCAATAACACCGCTGAGGAAATCAAAACCAGTGC 33168 | ||| | || | || ||||| || ||| ||||||| ||| | || | || | Sbjct 7473 GCTATATCGATGATAATCCGTTCAAAGGCATATCACCGCTCAGGGAGTCGCGAGTTGTTC 7532 Query 33169 CGGATCCACTGACCAGAGATGAGTTTAGCCGTCTCATTGATGCCTGCCATCATCAACAGA 33228 | || || || | || || ||||| | | ||||| ||||| |||| | || ||| Sbjct 7533 CTGACCCGCTTTCAAGGGAGGAGTTCGTCAGGCTCATCGATGCATGCCGTAGCCAGCAGG 7592 Query 33229 CCAAAAACCTCTGGACAGTGGCTGTTTTTACAGGGATGCGACACGGTGAAATTGCCGCAC 33288 | ||||| || ||| | | |||| | |||||| | ||| || || ||| || | Sbjct 7593 CTAAAAATCTGTGGGCGCTTTCTGTCTATACAGGACTTAGACCTGGGGAG-TTGT-GCTC 7650 Query 33289 TT--GCATGGGAGGATATCGACCTGAAAGCTGGCACGATAACAGTGCGACGAAATTTTAC 33346 || | ||||||||||||||||||||| ||| ||||| | | | |||| || | Sbjct 7651 TTTAGGCTGGGAGGATATCGACCTGAAAAGTGGGACGATGATGATCAGGAGAAACTTGGC 7710 Query 33347 AAAAATAGGTGATTTTACGCTACCAAAGACCGACGCAGGCACTAACCGGGTTATACATCT 33406 || | | | |||||| | ||||||||| | || || || ||| |||||||||| || Sbjct 7711 GAA---GGATAAATTTACGGTTCCAAAGACCCAGGCTGGAACCAACAGGGTTATACACCT 7767 Query 33407 TCTGGCACCAGCAATTGAAGCACTTAAAAACCAGGCGATGCTTACTCGTCTTAGCAGGCA 33466 | ||| ||||| || || || |||| || | | | | || ||| | | | | Sbjct 7768 CATTAAACCGGCAATAGAGGCGCTCAAAAGTCAACTGGAGATATCACGACTTGGAAAGGA 7827 Query 33467 GCATCAGATCACTGTTCAATTACGCGAGTACGG----AAGAACAATTTTGCACGAGTGCA 33522 ||| | | |||||| | || || || || ||| | || |||||| || | Sbjct 7828 GCACGTGCTGGATGTTCACCTGCGGGAATATGGTAAAAAGGAAAA----GCACGAATGTA 7883 Query 33523 CTTTTGT-TTTCTGTCCGCAAATC-GTT--CGCAAGAATC--ACAAGGCTGGTATTAACT 33576 | ||||| ||||| ||| || ||| | | ||| | | | || || | ||| Sbjct 7884 CCTTTGTGTTTCT-TCC----TTCTGTTACCTCCCGAACCGGAGTATGC-GGCGATCACT 7937 Query 33577 ACGCGGTAAGCTCCATCGGAGCGACATGGGATTCAGCAATAAAAAGAGCGGGTATCCGAT 33636 | | || || || || |||||||| ||||| ||||| | || || || || Sbjct 7938 TCACTGTCGATTCTGTCAGACAAACATGGGACACAGCAGTAAAACGCGCAGGCATAAGAC 7997 Query 33637 CCCGTAAAGCGTATCAGTCACGCCATACCTATGCGTGCTGGGCTTTATCTGCCGGAGCAA 33696 | | || | |||||||| | || || || || |||||| | || | ||||| || | Sbjct 7998 ACAGGAAGTCATATCAGTCCAGGCACACTTACGCTTGCTGGTCATTGACGGCCGGTGCCA 8057 Query 33697 ACCCGACATTTATTGCATCACAGATGGGGCA--CTCCAGCGCCAGCATGGTCTACAATGT 33754 |||| |||| ||||| ||||| |||||||| || ||| ||| ||||| | | | || Sbjct 8058 ACCCAGCATTCATTGCGTCACAAATGGGGCATGCTGATGCG-CAG-ATGGTATTCCAGGT 8115 Query 33755 TTATGGTGCATGGATG 33770 ||| ||| ||||||| Sbjct 8116 TTACGGTAAATGGATG 8131 Score = 91.5 bits (100), Expect = 6e-14 Identities = 90/115 (78%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 19580 CCTGTTTAGACCCCTACACGTAAACGTGCTGTATCATCGGGTGCGATCCGGTCGATGAGA 19639 |||||||||||||| || | ||| | | |||||| | | |||||||||| | ||||| Sbjct 42333 CCTGTTTAGACCCCAACGCACAAATGCGGCGTATCACCAGCGGCGATCCGGTTGGTGAGA 42392 Query 19640 GAG-TATCCCCGCGCGAGAGCGAGAACGGCGTGAGAACGGGCAACACTGGCAGGA 19693 | || |||| || |||||||| | |||||| ||||||||||||||||| ||| Sbjct 42393 AGGCTACCCCCTCGTGAGAGCGATTAAGGCGTGGGAACGGGCAACACTGGCGGGA 42447 >seq9686 Length=37809 Score = 453 bits (502), Expect = 4e-123 Identities = 955/1402 (68%), Gaps = 38/1402 (3%) Strand=Plus/Minus Query 13488 GTAGGTATGAGCACACCATCCGTCACTCAGTGGCTTACCTGTCGCGTTGCGGTAATTCTG 13547 |||||||||||||||||| || ||||| | || || || ||| |||| ||| Sbjct 36683 GTAGGTATGAGCACACCACCCATCACTGACAGGTTTTCCCATCGATGCACGGTGGCGCTG 36624 Query 13548 ATACCCCTTGATCTCGCTCCACCAACGCTGTTTTTCCTCACGGGTGTATTCGCGTTTC-C 13606 ||| ||||||| |||||||| |||||| ||| |||||| | | |||| | Sbjct 36623 ATAAAATTTGATCTGACTCCACCAGGACTGTTTGTCCGTTTTGGTGTAACC-CTTTTCGC 36565 Query 13607 CTTTGTTGACGCGT---GAAAGCTTACGATCGCG-ATCTGTCGCCACGTCATCACCACCA 13662 | || |||| || | || | || || | ||| ||| || | || || ||||| | Sbjct 36564 CCTTTTTGA-GCTTTTTGATA--TTCCGCT-GCGTATCGGTTTCAACATCCTCACCGACC 36509 Query 13663 AGAGGACGAAATCCACATTTGGGACACATATGCACGCCAGCAGGCTTCATGAAGTGGCAT 13722 || || ||| |||||||| || || | | ||| || ||||| |||||||| |||||| Sbjct 36508 AGCGGCTTAAAACCACATTTCGGGCAGACGTACACCCCTGCAGGTTTCATGAAATGGCAT 36449 Query 13723 TTGGGGCATTCCCTGGGAAGTTTCTCAGCCTTAACCTCA-CTCCC--GCCAGCAGACGCT 13779 ||||||| | |||||||| || || | ||||| || | | |||| | | || Sbjct 36448 CCATGGCATTCTTTCGGAAGTTTTTCCTCCCGATCCTCAGCTACACGGGCAGCGGCCTCT 36389 Query 13780 TTCATTCCGTCATTTTTTCCCGGAAGTTCGTCATACTCGATATCCTCGGGGAAGCCCAGC 13839 ||||| || || |||| ||| || ||| ||||| ||| | || || || ||||| Sbjct 36388 TTCATGCCATCGCTTTTCGACGGGAGGTCGCTGTACTCAATAGCGTCAGGAAATCCCAGG 36329 Query 13840 CGATGAACCGTGCCGGAATGGTCGAAAATCAATGCGCGTTTTTTACCAGACGCAGTACGT 13899 ||||| || ||||| || ||||| || | | | ||| || | ||||| || Sbjct 36328 CGATGGACGGTGCCACTGTGATCGAAGATGAGACAGGCATCTTTGCCTGGTGCAGTGCGA 36269 Query 13900 AACGCTCTCCCGA-TGCACTGCAACCAGCGGATTTCTGATTTGGTCGGACGGGCGTAGAT 13958 | | | ||| | ||| |||||||||||| ||||| |||||| || |||||||| || Sbjct 36268 AGGCCACGCCCCAGTGC-CTGCAACCAGCGAATTTCGCTTTTGGTAGGGCGGGCGTAAAT 36210 Query 13959 CAGGCAGCGAACATCGCTGTCAAATCCCGCAACCAGTACGCCAACGTTGACAATTATTTT 14018 || ||||||||| || || || || ||||| |||||||| || ||| ||| ||| ||||| Sbjct 36209 CACGCAGCGAACGTCACTATCGAAGCCCGCCACCAGTACACCGACGCTGATAATGATTTT 36150 Query 14019 GGTCGCACCCTCTTCAAAACGGCGAATGATGTCCTGTCGTTCATCATGGGGGGTATCTGC 14078 ||||| || |||||| ||| | || || |||||||| || || || || || || Sbjct 36149 TGTCGCGCCAGTTTCAAAGCGGTGGATCATCAGTTGTCGTTCTTCGTGCGGCGTTTCGGC 36090 Query 14079 CGTCATCACCTCTGCGCCAATGCCAGACTGTAAAAACTCACGGGTAACAAAGTTCGCATG 14138 | ||||||||| || | ||| | | |||| || || |||| || || Sbjct 36089 CACCATCACCTCGGCATTCACGCCCGCTTTGTTGAACTGCATCGTGACGTAGTTGGCGTG 36030 Query 14139 AGCCACATTCACGCAGAAGCAGATCGTCGGTAAATCCTCGCCATTCTCAAGCCAGTTGCT 14198 ||| ||| || ||||| | ||||| | |||| || || |||||||| Sbjct 36029 GGCCTTATTGACACAGAACGCCACTGTCGGAAGGTCCTGCCCGTTACGCAGCCAGTTATC 35970 Query 14199 GACGATATCGCCAACCAGATCCGAACTCCCCATGATGGATGCGAGCTGTTCCTCGTTGTA 14258 ||| || ||||| ||||| ||||| | | |||||| || | |||| |||||| ||| Sbjct 35969 GACAATGTCGCCGACCAGCTCCGATCCGCACATGATTTCAGCCAACTGTGCCTCGTCGTA 35910 Query 14259 ATCCCGTCCA-AATACGGTGTTAC--TGGTTTTTACGCCAGCCAGATCAGGCATTGAGGG 14315 || | ||| | | | | | | || || ||||| |||||| ||| ||| || Sbjct 35909 GTCGCTGCCATACTCCATCGACGCTTTCGTCTTAACGCCTTTCAGATCCGGCTTTGTCGG 35850 Query 14316 GGCAAAAAACTCATAATCGCTCAGATCACCACGCTGAATAAGTTCACGAATCGTTGTAGG 14375 |||| | ||||| |||| ||||||||||||||||| ||||| || | || || || || Sbjct 35849 GGCATAGAACTCGTAATTACTCAGATCACCACGCTGGATAAGCTCGCCGATGGTGGTCGG 35790 Query 14376 CTTGATCAGGCATTCGTAGTACTTCCCCATCCAGGCTGCGAACGGGGTGCCGGAAAGCCC 14435 |||||||||| | |||||| ||||||| | | || |||||||| ||||| || || Sbjct 35789 TTTGATCAGGCGCTGGTAGTAATTCCCCAGGAAAGGTGAAAACGGGGTTCCGGACAGGCC 35730 Query 14436 AAGAACCCTGATATCTTTG--TCCCG----GATAACCTCAA-GTAACGCA-----CGACG 14483 | |||| | ||||| | ||| ||| ||||| | || || || Sbjct 35729 TATAACC---TTCGCTTTGGTTTCCGTGGTGATCCGCTCAATCTCTTTCAGAATGCGGCG 35673 Query 14484 CTT---CATGTGTGCTTCATCGATGATCAGCAGATCGATGTTGTCAGGAAACTCACGACG 14540 || || || ||||| ||||| |||||||||||||| | | || || || || || Sbjct 35672 TTTGCGCAGATGGGCTTCGTCGATAATCAGCAGATCGATATCCTGCGGGAATTCCCGGCG 35613 Query 14541 GATCAGCGTGTCGGCACTGGCAATCTGAATCAGTCGTGACGGGTCATAGTTAGGGTGATC 14600 ||||||||||||||| ||||||||||| ||| | | ||||||||||| |||||||| Sbjct 35612 GATCAGCGTGTCGGCGCTGGCAATCTGGATCTGCAGGCTGGGGTCATAGTTCGGGTGATC 35553 Query 14601 ACGCCATACAAAACTGATTTCTTCCCACGGCAAACCGTATTCGGTGAAACGTTCCGCTGT 14660 |||||| | ||| ||||| | || ||| | || || | | || || | || || Sbjct 35552 ACGCCAGATAAAGCTGATCTGGTCTTCCGGAAGGCCATACTGAGCAAAGCGCTGTGCGGT 35493 Query 14661 CTGGTTCAGCAGGATGGTGTACGGACAGACAAACATCACCCGCATACCACGTTCAACCAT 14720 ||| || | |||||||||||| || |||||||| || ||||||||||| |||| Sbjct 35492 CTGATTGATCAGGATGGTGTAAGGGGCGACAAACAGAACGCGCATACCACGGCTCACCAG 35433 Query 14721 TCCGGCAGTGACGAATGCTGCAAGACCAGTTTTGCCAGAGCCAGTGGGTGCATACATCAG 14780 || | | || || || || || || |||||||| ||| || || |||||||| Sbjct 35432 ACCATCTGCAACAAAAGCAGCCAGCCCGGTTTTGCCGCTGCCGGTCGGCATATACATCAT 35373 Query 14781 GTACG-TGCGATGCTGTTTCCACTGGTGCCGCAGCTGGTTTAAACCGCGCTCCTGAGCAA 14839 | ||| | || | | ||||| | | |||||| ||| | |||| ||||| |||| Sbjct 35372 GAACGATTCG-TACGCCTTCCAGTCACGGCGCAGCATGTTCAGCGCGCGTTCCTGTGCAA 35314 Query 14840 AGTTTGGGGTGATTTTCAGCAT 14861 | ||||| ||||| || ||||| Sbjct 35313 AATTTGGTGTGATGTTAAGCAT 35292 Score = 293 bits (324), Expect = 9e-75 Identities = 356/483 (74%), Gaps = 11/483 (2%) Strand=Plus/Minus Query 10683 TTAAGCAGCGTGGCAATGTAACCACTCTTATCATGATATGCAGATTTTTACGATCGTAAA 10742 |||||| ||| | | || |||||||||| || ||||| | | |||||||| |||||| Sbjct 631 TTAAGCGTTGTGTCGAAGTGACCACTCTTAACAGGATATCCGGTTTTTTACGTACGTAAA 572 Query 10743 CTATTTTTT-CGCTGATAAAATACAGAGGTTCTCCCTCCCGGCAATTCACGCTCAACATA 10801 || |||| | ||||| ||| ||| | |||| |||||| ||| || Sbjct 571 CTTTTTTATGCGCTGGCCGC---CAG----TCTGGATTCCGG---TTCACGGGAAACGTA 522 Query 10802 CCGATCCATCTCAAGCCTCACTCCCAGCATCATCAGCATGCCTTCAACAATCCCCTCCGC 10861 || ||||||||| || | || | ||||||||||||||||||||||||| ||||| || Sbjct 521 CCTATCCATCTCCAGTCGGACATCGAGCATCATCAGCATGCCTTCAACAACTCCCTCGGC 462 Query 10862 TTTGTGAAGGCGTTTACCTATACAGGTGTCAGAGCACCCATGTTTCCGTGCCAGCGCCAT 10921 ||| || | |||||| ||| | || ||||| ||||| || || ||||||||||| Sbjct 461 TTTTTGTAACTTTTTACCGATATGGCCATCTGAGCAACCATGCTTTCGAGCCAGCGCCAT 402 Query 10922 GAACGTCTCCCCCAACACGTAATAATCAACCAGCAAGTCATGCAGATCGCTGTTGTTCCT 10981 |||||| ||||| |||||||||||| ||||||| || |||| ||||| ||||| | Sbjct 401 AAACGTCATCCCCATCACGTAATAATCCACCAGCAGATCGTGCAAATCGCGATTGTTTTT 342 Query 10982 GTTAAGGCGAGCCATACACCCGCATATAATCATCGCGTCATCGTCACAACACTGTGGACG 11041 ||| || | || || |||||||| | | |||||| ||||| |||||||||||||| || Sbjct 341 GTTCAGCCTGGCGATGCACCCGCAGACGACCATCGCATCATCATCACAACACTGTGGCCG 282 Query 11042 TGATTTTACTTTTTCGGGGATCAGCCTCTTAAATCCGGCAGCAATGGGCGACCATGTAAC 11101 |||||||| | | || | || | |||||||| || ||||| |||| ||| | ||| Sbjct 281 CGATTTTACCCTGGCCGGAAGGAGTCCTTTAAATCCAGCGGCAATCGGCGCCCAGGCAAC 222 Query 11102 ATCCTCATGGTTATTTGCCGCCCATGCCCCCCAGCGCTCAAGAACCTGCCGGATAWCACG 11161 ||| ||||| ||||| || ||||| || |||||||| || | ||||| |||| | || Sbjct 221 ATCTTCATGATTATTGGCTGCCCACGCTCCCCAGCGTTCTAATACCTGTTGGATGTCTCG 162 Query 11162 CAT 11164 ||| Sbjct 161 CAT 159 Lambda K H 0.634 0.408 0.913 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 195049868889706