Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_028660.1
Length=61035
Score E
Sequences producing significant alignments: (Bits) Value
seq4723 500 3e-137
seq9686 453 4e-123
>seq4723
Length=43540
Score = 500 bits (554), Expect = 3e-137
Identities = 522/685 (76%), Gaps = 0/685 (0%)
Strand=Plus/Plus
Query 23463 AGGCCGTGTCATGACACCAGAAATTATTCTCCAGCGAACTGGCGTGGATATTACCAGCCT 23522
|||||| ||||||||| |||||||| || || || ||| | || | || | |
Sbjct 1595 AGGCCGCAGCATGACACCTGAAATTATCCTGGCCCGGACGGGCATTGACGTAACAACGGT 1654
Query 23523 CGACCAGGGCGATGATGGATGGCACAAGCTGAGACTCGGTGTTATCACTGCTTCAGAAGT 23582
||| || |||||||| | ||||| | |||| | ||||| || || || || || |||||
Sbjct 1655 CGAGCAAGGCGATGAAGCGTGGCAAAGGCTGCGCCTCGGCGTAATTACGGCATCTGAAGT 1714
Query 23583 TCACAATGTGATAGCAAAGCCACGTTCCGGCAGCAAATGGCCTGATACAAAAATGTCATA 23642
||| || || | || || || ||||| | || ||| | || | |||||||| ||
Sbjct 1715 CAGCAACGTAATTTCCAAACCTCGCTCCGGGAAGAAGTGGACGGACATGAAAATGTCTTA 1774
Query 23643 CTTCCACACCCTGCTGGCTGAAGTTTGTACTGGCGTGGCACCGGAAGTTAACGCTAAGTC 23702
|||||||||||||||||| ||||| || || ||||| | |||||||||||||| |||||
Sbjct 1775 CTTCCACACCCTGCTGGCGGAAGTCTGCACCGGCGTATCGCCGGAAGTTAACGCCAAGTC 1834
Query 23703 GCTCGCATGGGGAAAGCAATACGAAGATGATGCCCGTGCCCTCTTCGAATTTATCGCGGA 23762
||| |||||||| || |||| |||||| || || || |||| ||||| || | | |
Sbjct 1835 GCTGGCATGGGGTAAACAATTCGAAGAAGACGCGCGAACCCTTTTCGAGTTCACGACCGG 1894
Query 23763 TGTTACCGTCTCGGAAACGCCAATAATTTTTCGTGACGAAAGCATGCGCACCGCCTGCTC 23822
||||||||| || |||| || | || || ||||| | |||||||| ||||||||
Sbjct 1895 CGTTACCGTCATAGAGTCGCCGATCCTCTTCCGCGACGAGAATATGCGCACGGCCTGCTC 1954
Query 23823 TCCCGACGGTTTATGCAGCGACGGTAACGGTCTTGAGCTTAAATGCCCTTTTACTTCCCG 23882
||| ||||| | ||||| ||| || || || || || |||||||| || |||||
Sbjct 1955 TCCTGACGGGCTGTGCAGTAACGACTTTGGCCTCGAACTGAAGTGCCCTTTCACCTCCCG 2014
Query 23883 CGACTTCATGAAATTCCGGCTTGGCGGCTTTGACGCTATCAAGCCTGCTTACATGGCCCA 23942
|||||||||||||||| |||||||||||||||| || |||||| | || |||||||||||
Sbjct 2015 CGACTTCATGAAATTCAGGCTTGGCGGCTTTGAGGCCATCAAGTCCGCGTACATGGCCCA 2074
Query 23943 GGTGCAATTCAGCATGTGGGTTACAGACAAGGACGCCTGGTACTTCGCCAACTACGACCC 24002
||| || | |||||||||| |||| | ||| ||||||||| ||| ||||| ||||||||
Sbjct 2075 GGTTCAGTACAGCATGTGGATTACCGGAAAGAACGCCTGGTTCTTTGCCAATTACGACCC 2134
Query 24003 ACGCATGAAGCGTGAAGGCCTGCATTATGTCGTGGTCGAGCGGGATGAAAAGTACATGGC 24062
||||||||| || |||||| | || ||||| ||||||| || || || || ||||||||
Sbjct 2135 ACGCATGAAACGCGAAGGCATCCACCATGTCTTGGTCGAACGTGACGACAAATACATGGC 2194
Query 24063 GAGTTTTGATGAGATGGTGCCGGAGTTCATCGACAAAATGGACGAAGCACTGGCGGAAAT 24122
|||||| |||||||||||||| |||||||| || ||||| || || || || |||||
Sbjct 2195 TGATTTTGACGAGATGGTGCCGGAATTCATCGAGAAGATGGATGAGGCGCTTGCTGAAAT 2254
Query 24123 TGGTTTTGTATTTGGAGAACAATGG 24147
|| || || ||| |||||||||
Sbjct 2255 CGGCTTCACATATGGGGAACAATGG 2279
Score = 111 bits (122), Expect = 6e-20
Identities = 479/736 (65%), Gaps = 35/736 (5%)
Strand=Plus/Plus
Query 33051 ACAGTGAACTATTACATGACAACAACAGC-CGGAATGTT-CAGCTTTGCCGCCGAAAACG 33108
||||||||| | |||||||| | | | | || | |||| ||| |||| | || || |
Sbjct 7415 ACAGTGAACAACTACATGACCA-ACCTGTACGCAGTGTTTCAG-TTTGGCATGGAGAATG 7472
Query 33109 GGTATCTGGAGAAAAACCCGTTTAATTCAATAACACCGCTGAGGAAATCAAAACCAGTGC 33168
| ||| | || | || ||||| || ||| ||||||| ||| | || | || |
Sbjct 7473 GCTATATCGATGATAATCCGTTCAAAGGCATATCACCGCTCAGGGAGTCGCGAGTTGTTC 7532
Query 33169 CGGATCCACTGACCAGAGATGAGTTTAGCCGTCTCATTGATGCCTGCCATCATCAACAGA 33228
| || || || | || || ||||| | | ||||| ||||| |||| | || |||
Sbjct 7533 CTGACCCGCTTTCAAGGGAGGAGTTCGTCAGGCTCATCGATGCATGCCGTAGCCAGCAGG 7592
Query 33229 CCAAAAACCTCTGGACAGTGGCTGTTTTTACAGGGATGCGACACGGTGAAATTGCCGCAC 33288
| ||||| || ||| | | |||| | |||||| | ||| || || ||| || |
Sbjct 7593 CTAAAAATCTGTGGGCGCTTTCTGTCTATACAGGACTTAGACCTGGGGAG-TTGT-GCTC 7650
Query 33289 TT--GCATGGGAGGATATCGACCTGAAAGCTGGCACGATAACAGTGCGACGAAATTTTAC 33346
|| | ||||||||||||||||||||| ||| ||||| | | | |||| || |
Sbjct 7651 TTTAGGCTGGGAGGATATCGACCTGAAAAGTGGGACGATGATGATCAGGAGAAACTTGGC 7710
Query 33347 AAAAATAGGTGATTTTACGCTACCAAAGACCGACGCAGGCACTAACCGGGTTATACATCT 33406
|| | | | |||||| | ||||||||| | || || || ||| |||||||||| ||
Sbjct 7711 GAA---GGATAAATTTACGGTTCCAAAGACCCAGGCTGGAACCAACAGGGTTATACACCT 7767
Query 33407 TCTGGCACCAGCAATTGAAGCACTTAAAAACCAGGCGATGCTTACTCGTCTTAGCAGGCA 33466
| ||| ||||| || || || |||| || | | | | || ||| | | | |
Sbjct 7768 CATTAAACCGGCAATAGAGGCGCTCAAAAGTCAACTGGAGATATCACGACTTGGAAAGGA 7827
Query 33467 GCATCAGATCACTGTTCAATTACGCGAGTACGG----AAGAACAATTTTGCACGAGTGCA 33522
||| | | |||||| | || || || || ||| | || |||||| || |
Sbjct 7828 GCACGTGCTGGATGTTCACCTGCGGGAATATGGTAAAAAGGAAAA----GCACGAATGTA 7883
Query 33523 CTTTTGT-TTTCTGTCCGCAAATC-GTT--CGCAAGAATC--ACAAGGCTGGTATTAACT 33576
| ||||| ||||| ||| || ||| | | ||| | | | || || | |||
Sbjct 7884 CCTTTGTGTTTCT-TCC----TTCTGTTACCTCCCGAACCGGAGTATGC-GGCGATCACT 7937
Query 33577 ACGCGGTAAGCTCCATCGGAGCGACATGGGATTCAGCAATAAAAAGAGCGGGTATCCGAT 33636
| | || || || || |||||||| ||||| ||||| | || || || ||
Sbjct 7938 TCACTGTCGATTCTGTCAGACAAACATGGGACACAGCAGTAAAACGCGCAGGCATAAGAC 7997
Query 33637 CCCGTAAAGCGTATCAGTCACGCCATACCTATGCGTGCTGGGCTTTATCTGCCGGAGCAA 33696
| | || | |||||||| | || || || || |||||| | || | ||||| || |
Sbjct 7998 ACAGGAAGTCATATCAGTCCAGGCACACTTACGCTTGCTGGTCATTGACGGCCGGTGCCA 8057
Query 33697 ACCCGACATTTATTGCATCACAGATGGGGCA--CTCCAGCGCCAGCATGGTCTACAATGT 33754
|||| |||| ||||| ||||| |||||||| || ||| ||| ||||| | | | ||
Sbjct 8058 ACCCAGCATTCATTGCGTCACAAATGGGGCATGCTGATGCG-CAG-ATGGTATTCCAGGT 8115
Query 33755 TTATGGTGCATGGATG 33770
||| ||| |||||||
Sbjct 8116 TTACGGTAAATGGATG 8131
Score = 91.5 bits (100), Expect = 6e-14
Identities = 90/115 (78%), Gaps = 1/115 (1%)
Strand=Plus/Plus
Query 19580 CCTGTTTAGACCCCTACACGTAAACGTGCTGTATCATCGGGTGCGATCCGGTCGATGAGA 19639
|||||||||||||| || | ||| | | |||||| | | |||||||||| | |||||
Sbjct 42333 CCTGTTTAGACCCCAACGCACAAATGCGGCGTATCACCAGCGGCGATCCGGTTGGTGAGA 42392
Query 19640 GAG-TATCCCCGCGCGAGAGCGAGAACGGCGTGAGAACGGGCAACACTGGCAGGA 19693
| || |||| || |||||||| | |||||| ||||||||||||||||| |||
Sbjct 42393 AGGCTACCCCCTCGTGAGAGCGATTAAGGCGTGGGAACGGGCAACACTGGCGGGA 42447
>seq9686
Length=37809
Score = 453 bits (502), Expect = 4e-123
Identities = 955/1402 (68%), Gaps = 38/1402 (3%)
Strand=Plus/Minus
Query 13488 GTAGGTATGAGCACACCATCCGTCACTCAGTGGCTTACCTGTCGCGTTGCGGTAATTCTG 13547
|||||||||||||||||| || ||||| | || || || ||| |||| |||
Sbjct 36683 GTAGGTATGAGCACACCACCCATCACTGACAGGTTTTCCCATCGATGCACGGTGGCGCTG 36624
Query 13548 ATACCCCTTGATCTCGCTCCACCAACGCTGTTTTTCCTCACGGGTGTATTCGCGTTTC-C 13606
||| ||||||| |||||||| |||||| ||| |||||| | | |||| |
Sbjct 36623 ATAAAATTTGATCTGACTCCACCAGGACTGTTTGTCCGTTTTGGTGTAACC-CTTTTCGC 36565
Query 13607 CTTTGTTGACGCGT---GAAAGCTTACGATCGCG-ATCTGTCGCCACGTCATCACCACCA 13662
| || |||| || | || | || || | ||| ||| || | || || ||||| |
Sbjct 36564 CCTTTTTGA-GCTTTTTGATA--TTCCGCT-GCGTATCGGTTTCAACATCCTCACCGACC 36509
Query 13663 AGAGGACGAAATCCACATTTGGGACACATATGCACGCCAGCAGGCTTCATGAAGTGGCAT 13722
|| || ||| |||||||| || || | | ||| || ||||| |||||||| ||||||
Sbjct 36508 AGCGGCTTAAAACCACATTTCGGGCAGACGTACACCCCTGCAGGTTTCATGAAATGGCAT 36449
Query 13723 TTGGGGCATTCCCTGGGAAGTTTCTCAGCCTTAACCTCA-CTCCC--GCCAGCAGACGCT 13779
||||||| | |||||||| || || | ||||| || | | |||| | | ||
Sbjct 36448 CCATGGCATTCTTTCGGAAGTTTTTCCTCCCGATCCTCAGCTACACGGGCAGCGGCCTCT 36389
Query 13780 TTCATTCCGTCATTTTTTCCCGGAAGTTCGTCATACTCGATATCCTCGGGGAAGCCCAGC 13839
||||| || || |||| ||| || ||| ||||| ||| | || || || |||||
Sbjct 36388 TTCATGCCATCGCTTTTCGACGGGAGGTCGCTGTACTCAATAGCGTCAGGAAATCCCAGG 36329
Query 13840 CGATGAACCGTGCCGGAATGGTCGAAAATCAATGCGCGTTTTTTACCAGACGCAGTACGT 13899
||||| || ||||| || ||||| || | | | ||| || | ||||| ||
Sbjct 36328 CGATGGACGGTGCCACTGTGATCGAAGATGAGACAGGCATCTTTGCCTGGTGCAGTGCGA 36269
Query 13900 AACGCTCTCCCGA-TGCACTGCAACCAGCGGATTTCTGATTTGGTCGGACGGGCGTAGAT 13958
| | | ||| | ||| |||||||||||| ||||| |||||| || |||||||| ||
Sbjct 36268 AGGCCACGCCCCAGTGC-CTGCAACCAGCGAATTTCGCTTTTGGTAGGGCGGGCGTAAAT 36210
Query 13959 CAGGCAGCGAACATCGCTGTCAAATCCCGCAACCAGTACGCCAACGTTGACAATTATTTT 14018
|| ||||||||| || || || || ||||| |||||||| || ||| ||| ||| |||||
Sbjct 36209 CACGCAGCGAACGTCACTATCGAAGCCCGCCACCAGTACACCGACGCTGATAATGATTTT 36150
Query 14019 GGTCGCACCCTCTTCAAAACGGCGAATGATGTCCTGTCGTTCATCATGGGGGGTATCTGC 14078
||||| || |||||| ||| | || || |||||||| || || || || || ||
Sbjct 36149 TGTCGCGCCAGTTTCAAAGCGGTGGATCATCAGTTGTCGTTCTTCGTGCGGCGTTTCGGC 36090
Query 14079 CGTCATCACCTCTGCGCCAATGCCAGACTGTAAAAACTCACGGGTAACAAAGTTCGCATG 14138
| ||||||||| || | ||| | | |||| || || |||| || ||
Sbjct 36089 CACCATCACCTCGGCATTCACGCCCGCTTTGTTGAACTGCATCGTGACGTAGTTGGCGTG 36030
Query 14139 AGCCACATTCACGCAGAAGCAGATCGTCGGTAAATCCTCGCCATTCTCAAGCCAGTTGCT 14198
||| ||| || ||||| | ||||| | |||| || || ||||||||
Sbjct 36029 GGCCTTATTGACACAGAACGCCACTGTCGGAAGGTCCTGCCCGTTACGCAGCCAGTTATC 35970
Query 14199 GACGATATCGCCAACCAGATCCGAACTCCCCATGATGGATGCGAGCTGTTCCTCGTTGTA 14258
||| || ||||| ||||| ||||| | | |||||| || | |||| |||||| |||
Sbjct 35969 GACAATGTCGCCGACCAGCTCCGATCCGCACATGATTTCAGCCAACTGTGCCTCGTCGTA 35910
Query 14259 ATCCCGTCCA-AATACGGTGTTAC--TGGTTTTTACGCCAGCCAGATCAGGCATTGAGGG 14315
|| | ||| | | | | | | || || ||||| |||||| ||| ||| ||
Sbjct 35909 GTCGCTGCCATACTCCATCGACGCTTTCGTCTTAACGCCTTTCAGATCCGGCTTTGTCGG 35850
Query 14316 GGCAAAAAACTCATAATCGCTCAGATCACCACGCTGAATAAGTTCACGAATCGTTGTAGG 14375
|||| | ||||| |||| ||||||||||||||||| ||||| || | || || || ||
Sbjct 35849 GGCATAGAACTCGTAATTACTCAGATCACCACGCTGGATAAGCTCGCCGATGGTGGTCGG 35790
Query 14376 CTTGATCAGGCATTCGTAGTACTTCCCCATCCAGGCTGCGAACGGGGTGCCGGAAAGCCC 14435
|||||||||| | |||||| ||||||| | | || |||||||| ||||| || ||
Sbjct 35789 TTTGATCAGGCGCTGGTAGTAATTCCCCAGGAAAGGTGAAAACGGGGTTCCGGACAGGCC 35730
Query 14436 AAGAACCCTGATATCTTTG--TCCCG----GATAACCTCAA-GTAACGCA-----CGACG 14483
| |||| | ||||| | ||| ||| ||||| | || || ||
Sbjct 35729 TATAACC---TTCGCTTTGGTTTCCGTGGTGATCCGCTCAATCTCTTTCAGAATGCGGCG 35673
Query 14484 CTT---CATGTGTGCTTCATCGATGATCAGCAGATCGATGTTGTCAGGAAACTCACGACG 14540
|| || || ||||| ||||| |||||||||||||| | | || || || || ||
Sbjct 35672 TTTGCGCAGATGGGCTTCGTCGATAATCAGCAGATCGATATCCTGCGGGAATTCCCGGCG 35613
Query 14541 GATCAGCGTGTCGGCACTGGCAATCTGAATCAGTCGTGACGGGTCATAGTTAGGGTGATC 14600
||||||||||||||| ||||||||||| ||| | | ||||||||||| ||||||||
Sbjct 35612 GATCAGCGTGTCGGCGCTGGCAATCTGGATCTGCAGGCTGGGGTCATAGTTCGGGTGATC 35553
Query 14601 ACGCCATACAAAACTGATTTCTTCCCACGGCAAACCGTATTCGGTGAAACGTTCCGCTGT 14660
|||||| | ||| ||||| | || ||| | || || | | || || | || ||
Sbjct 35552 ACGCCAGATAAAGCTGATCTGGTCTTCCGGAAGGCCATACTGAGCAAAGCGCTGTGCGGT 35493
Query 14661 CTGGTTCAGCAGGATGGTGTACGGACAGACAAACATCACCCGCATACCACGTTCAACCAT 14720
||| || | |||||||||||| || |||||||| || ||||||||||| ||||
Sbjct 35492 CTGATTGATCAGGATGGTGTAAGGGGCGACAAACAGAACGCGCATACCACGGCTCACCAG 35433
Query 14721 TCCGGCAGTGACGAATGCTGCAAGACCAGTTTTGCCAGAGCCAGTGGGTGCATACATCAG 14780
|| | | || || || || || || |||||||| ||| || || ||||||||
Sbjct 35432 ACCATCTGCAACAAAAGCAGCCAGCCCGGTTTTGCCGCTGCCGGTCGGCATATACATCAT 35373
Query 14781 GTACG-TGCGATGCTGTTTCCACTGGTGCCGCAGCTGGTTTAAACCGCGCTCCTGAGCAA 14839
| ||| | || | | ||||| | | |||||| ||| | |||| ||||| ||||
Sbjct 35372 GAACGATTCG-TACGCCTTCCAGTCACGGCGCAGCATGTTCAGCGCGCGTTCCTGTGCAA 35314
Query 14840 AGTTTGGGGTGATTTTCAGCAT 14861
| ||||| ||||| || |||||
Sbjct 35313 AATTTGGTGTGATGTTAAGCAT 35292
Score = 293 bits (324), Expect = 9e-75
Identities = 356/483 (74%), Gaps = 11/483 (2%)
Strand=Plus/Minus
Query 10683 TTAAGCAGCGTGGCAATGTAACCACTCTTATCATGATATGCAGATTTTTACGATCGTAAA 10742
|||||| ||| | | || |||||||||| || ||||| | | |||||||| ||||||
Sbjct 631 TTAAGCGTTGTGTCGAAGTGACCACTCTTAACAGGATATCCGGTTTTTTACGTACGTAAA 572
Query 10743 CTATTTTTT-CGCTGATAAAATACAGAGGTTCTCCCTCCCGGCAATTCACGCTCAACATA 10801
|| |||| | ||||| ||| ||| | |||| |||||| ||| ||
Sbjct 571 CTTTTTTATGCGCTGGCCGC---CAG----TCTGGATTCCGG---TTCACGGGAAACGTA 522
Query 10802 CCGATCCATCTCAAGCCTCACTCCCAGCATCATCAGCATGCCTTCAACAATCCCCTCCGC 10861
|| ||||||||| || | || | ||||||||||||||||||||||||| ||||| ||
Sbjct 521 CCTATCCATCTCCAGTCGGACATCGAGCATCATCAGCATGCCTTCAACAACTCCCTCGGC 462
Query 10862 TTTGTGAAGGCGTTTACCTATACAGGTGTCAGAGCACCCATGTTTCCGTGCCAGCGCCAT 10921
||| || | |||||| ||| | || ||||| ||||| || || |||||||||||
Sbjct 461 TTTTTGTAACTTTTTACCGATATGGCCATCTGAGCAACCATGCTTTCGAGCCAGCGCCAT 402
Query 10922 GAACGTCTCCCCCAACACGTAATAATCAACCAGCAAGTCATGCAGATCGCTGTTGTTCCT 10981
|||||| ||||| |||||||||||| ||||||| || |||| ||||| ||||| |
Sbjct 401 AAACGTCATCCCCATCACGTAATAATCCACCAGCAGATCGTGCAAATCGCGATTGTTTTT 342
Query 10982 GTTAAGGCGAGCCATACACCCGCATATAATCATCGCGTCATCGTCACAACACTGTGGACG 11041
||| || | || || |||||||| | | |||||| ||||| |||||||||||||| ||
Sbjct 341 GTTCAGCCTGGCGATGCACCCGCAGACGACCATCGCATCATCATCACAACACTGTGGCCG 282
Query 11042 TGATTTTACTTTTTCGGGGATCAGCCTCTTAAATCCGGCAGCAATGGGCGACCATGTAAC 11101
|||||||| | | || | || | |||||||| || ||||| |||| ||| | |||
Sbjct 281 CGATTTTACCCTGGCCGGAAGGAGTCCTTTAAATCCAGCGGCAATCGGCGCCCAGGCAAC 222
Query 11102 ATCCTCATGGTTATTTGCCGCCCATGCCCCCCAGCGCTCAAGAACCTGCCGGATAWCACG 11161
||| ||||| ||||| || ||||| || |||||||| || | ||||| |||| | ||
Sbjct 221 ATCTTCATGATTATTGGCTGCCCACGCTCCCCAGCGTTCTAATACCTGTTGGATGTCTCG 162
Query 11162 CAT 11164
|||
Sbjct 161 CAT 159
Lambda K H
0.634 0.408 0.913
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 195049868889706
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