Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_028685.1 Length=62851 Score E Sequences producing significant alignments: (Bits) Value seq4723 479 1e-130 seq9686 430 5e-116 >seq4723 Length=43540 Score = 479 bits (530), Expect = 1e-130 Identities = 517/685 (75%), Gaps = 0/685 (0%) Strand=Plus/Minus Query 11622 CCATTGTTCTCCAAATACAAAACCAATTTCTGCCAGTGCTTCGTCCATTTTGTCGATGAA 11681 ||||||||| ||| || || || ||||| || || || || ||||| || |||||||| Sbjct 2279 CCATTGTTCCCCATATGTGAAGCCGATTTCAGCAAGCGCCTCATCCATCTTCTCGATGAA 2220 Query 11682 CTCCGGCACCATCTCATCAAAACTCGCCATGTACTTTTCATCCCGCTCGACCACGACATA 11741 |||||||||||||| |||||| |||||||| || || || || ||||||| ||||| Sbjct 2219 TTCCGGCACCATCTCGTCAAAATCAGCCATGTATTTGTCGTCACGTTCGACCAAGACATG 2160 Query 11742 ATGCAGGCCTTCACGCTTCATGCGTGGGTCGTAGTTGGCGAAGTACCAGGCGTCCTTGTC 11801 || | |||||| || ||||||||||||||||| ||||| ||| ||||||||| ||| | Sbjct 2159 GTGGATGCCTTCGCGTTTCATGCGTGGGTCGTAATTGGCAAAGAACCAGGCGTTCTTTCC 2100 Query 11802 TGTAACCCACATGCTGAATTGCACCTGGGCCATGTAAGCAGGCTTGATAGCGTCAAAGCC 11861 |||| |||||||||| | || |||||||||||||| || | |||||| || |||||||| Sbjct 2099 GGTAATCCACATGCTGTACTGAACCTGGGCCATGTACGCGGACTTGATGGCCTCAAAGCC 2040 Query 11862 GCCAAGCCGGAACTTCATGAAGTCGCGGGAAGTAAAGGGGCATTTAAGCTCAAGACCGTT 11921 |||||||| ||| ||||||||||||||||| || || ||||| || || || || || Sbjct 2039 GCCAAGCCTGAATTTCATGAAGTCGCGGGAGGTGAAAGGGCACTTCAGTTCGAGGCCAAA 1980 Query 11922 ACCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATGCTTTCGTCACGAAAAAT 11981 ||| |||||| | || || ||||||||||| |||||||| | ||||| || || | Sbjct 1979 GTCGTTACTGCACAGCCCGTCAGGAGAGCAGGCCGTGCGCATATTCTCGTCGCGGAAGAG 1920 Query 11982 TATGGGTGTTTCCGAGACGGTAACATCCGCGATAAATTCAAAGAGGGCACGGGCATCATC 12041 || || | || ||||||||| | | | || || || |||| || || || || Sbjct 1919 GATCGGCGACTCTATGACGGTAACGCCGGTCGTGAACTCGAAAAGGGTTCGCGCGTCTTC 1860 Query 12042 TTCATATTGCTTTCCCCATGCGAGCGACTTAGCGTTAACTTCCGGTGCCACGCCAGTACA 12101 ||| |||| || |||||||| |||||||| |||||||||||||| | ||||| || || Sbjct 1859 TTCGAATTGTTTACCCCATGCCAGCGACTTGGCGTTAACTTCCGGCGATACGCCGGTGCA 1800 Query 12102 AACTTCAGCCAGCAGGGTGTGGAAGTATGACATTTTTGTATCAGGCCATTTGCTGCCGGA 12161 ||||| |||||||||||||||||||| |||||||| | || | ||| || | ||||| Sbjct 1799 GACTTCCGCCAGCAGGGTGTGGAAGTAAGACATTTTCATGTCCGTCCACTTCTTCCCGGA 1740 Query 12162 ACGTGGCTTTGCTATCACATTGTGAACTTCTGAAGCAGTGATAACACCGAGTCTCAGCTT 12221 || || || | || || ||| ||||| || || || || || ||||| | |||| | Sbjct 1739 GCGAGGTTTGGAAATTACGTTGCTGACTTCAGATGCCGTAATTACGCCGAGGCGCAGCCT 1680 Query 12222 GTGCCATCCATCATCGCCCTGGTCGAGGCTGGTAATATCCACGCCAGTTCGCTGGAGAAT 12281 ||||| | |||||||| || |||| | || | || | ||| || || || || Sbjct 1679 TTGCCACGCTTCATCGCCTTGCTCGACCGTTGTTACGTCAATGCCCGTCCGGGCCAGGAT 1620 Query 12282 AATTTCTGGTGTCATGACACGGCCT 12306 |||||| ||||||||| |||||| Sbjct 1619 AATTTCAGGTGTCATGCTGCGGCCT 1595 Score = 120 bits (132), Expect = 1e-22 Identities = 481/736 (65%), Gaps = 35/736 (5%) Strand=Plus/Minus Query 213 CATCCATGCACCATAAACATTGTAGACCATGCTGGCGCTGGAG--TGCCCCATCTGTGAC 270 ||||||| ||| ||||| | | | ||||| ||| ||| || |||||||| |||||| Sbjct 8131 CATCCATTTACCGTAAACCTGGAATACCAT-CTG-CGCATCAGCATGCCCCATTTGTGAC 8074 Query 271 GCAATAAATGTCGGGTTTGCTCCGGCAGATAAAGCCCAGCACGCATAGGTATGGCGTGAC 330 ||||| |||| ||||| || ||||| | || | |||||| || || || || | ||| Sbjct 8073 GCAATGAATGCTGGGTTGGCACCGGCCGTCAATGACCAGCAAGCGTAAGTGTGCCTGGAC 8014 Query 331 TGATACGCTTTACGGGATCGGATACCCGCTCTTTTTATTGCTGAATCCCATGTCGCTCCG 390 ||||| | || | | || || || || | ||||| ||||| |||||||| || | Sbjct 8013 TGATATGACTTCCTGTGTCTTATGCCTGCGCGTTTTACTGCTGTGTCCCATGTTTGTCTG 7954 Query 391 ATGGAGCTTACCGCGTAGTTAATACCCGCCTTGT--GATTCTTGCG--AAC-GATTTGCG 445 | || || | | ||| | | |||| | | | ||| | | ||| || | Sbjct 7953 ACAGAATCGACAGTGAAGTGA-TCGCCGCATACTCCGGTTCGGGAGGTAACAGAA----G 7899 Query 446 GACAGAAA-ACAAAAGTGCACTCGTGCAAAATTGTTCTT----CCGTACTCGCGTAATTT 500 || ||||| ||||| || || |||||| || | ||| || || || || | | Sbjct 7898 GA-AGAAACACAAAGGTACATTCGTGC----TTTTCCTTTTTACCATATTCCCGCAGGTG 7844 Query 501 AACAGTGATCTGATGCTGCCTGCCAAGACGAGTAAGCATCGCCTGGTTTTTAAGTGCTTC 560 |||| | | |||| | | ||||| || | | | | || |||| || || || Sbjct 7843 AACATCCAGCACGTGCTCCTTTCCAAGTCGTGATATCTCCAGTTGACTTTTGAGCGCCTC 7784 Query 561 AATTGCTGGTGCCAGAAGATGTATAACCCGGTTAGTGCCTGCGTCAGTCTTTGGTAGCGT 620 ||||| ||| | || |||||||||| ||| || || || | |||||||| | ||| Sbjct 7783 TATTGCCGGTTTAATGAGGTGTATAACCCTGTTGGTTCCAGCCTGGGTCTTTGGAACCGT 7724 Query 621 AAAATCACCTATTTTTGTAAAATTTCTTCGCACTGTTATCGTGCCAGCTTTCAGGTCGAT 680 ||| | | | || | || ||||| | | | ||||| ||| |||||||||||| Sbjct 7723 AAATTTATCC---TTCGCCAAGTTTCTCCTGATCATCATCGTCCCACTTTTCAGGTCGAT 7667 Query 681 ATCCTCCCATGC--AAGTGCGGCAATTTCACCGTGTCGCATCCCTGTAAAAACAGCCACT 738 ||||||||| | ||| || ||| || || ||| | |||||| | |||| | Sbjct 7666 ATCCTCCCAGCCTAAAGAGC-ACAA-CTCCCCAGGTCTAAGTCCTGTATAGACAGAAAGC 7609 Query 739 GTCCAGAGGTTTTTGGTCTGTTGATGATGGCAGGCATCAATGAGACGGCTAAACTCATCT 798 | ||| || ||||| | ||| || | |||| ||||| ||||| | | ||||| || Sbjct 7608 GCCCACAGATTTTTAGCCTGCTGGCTACGGCATGCATCGATGAGCCTGACGAACTCCTCC 7549 Query 799 CTGGTCAGTGGATCCGGCACTGGTTTTGATTTCCTCAGCGGTGTTATTGAATTAAACGGG 858 || | || || || || || | || | ||| ||||||| ||| || ||||| Sbjct 7548 CTTGAAAGCGGGTCAGGAACAACTCGCGACTCCCTGAGCGGTGATATGCCTTTGAACGGA 7489 Query 859 TTTTTCTCCAGATACCCGTTTTCGGCGGCAAAGCTG-AACATTCCG-GCTGTTGTTGTCA 916 || | || | ||| || || || | |||| ||| |||| | || | | | | |||| Sbjct 7488 TTATCATCGATATAGCCATTCTCCATGCCAAA-CTGAAACACTGCGTACAGGT-TGGTCA 7431 Query 917 TGTAATAGTTCACTGT 932 |||| | ||||||||| Sbjct 7430 TGTAGTTGTTCACTGT 7415 Score = 91.5 bits (100), Expect = 6e-14 Identities = 90/115 (78%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 16070 TCCTGCCAGTGTTGCCCGTTCTCACGCCGTTCTCGCTCTCGCGCGGGGATA-CTCTCTCA 16128 ||| ||||||||||||||||| |||||| | |||||||| || |||| || | ||||| Sbjct 42447 TCCCGCCAGTGTTGCCCGTTCCCACGCCTTAATCGCTCTCACGAGGGGGTAGCCTTCTCA 42388 Query 16129 TCGACCGGATCGCACCCGATGATACAGCACGTTTACGTGTAGGGGTCTAAACAGG 16183 | |||||||||| | | |||||| | | ||| | || |||||||||||||| Sbjct 42387 CCAACCGGATCGCCGCTGGTGATACGCCGCATTTGTGCGTTGGGGTCTAAACAGG 42333 >seq9686 Length=37809 Score = 430 bits (476), Expect = 5e-116 Identities = 949/1402 (68%), Gaps = 38/1402 (3%) Strand=Plus/Plus Query 20900 ATGCTGAAAATCACCCCAAACTTTGCTCAGGAGCGCGGTTTAAACCAGCTGCGGCACCAG 20959 ||||| || ||||| ||||| ||||| ||||| |||| | ||| |||||| | | Sbjct 35292 ATGCTTAACATCACACCAAATTTTGCACAGGAACGCGCGCTGAACATGCTGCGCCGTGAC 35351 Query 20960 TGGAAACTGCATCGCA-CGTACCTGATGTATGCACCCACTGGCTCTGGCAAAACTGGTCT 21018 ||||| | | || | ||| | |||||||| || || ||| |||||||| || || Sbjct 35352 TGGAAGGCGTA-CGAATCGTTCATGATGTATATGCCGACCGGCAGCGGCAAAACCGGGCT 35410 Query 21019 TGCAGCATTCGTCACTGCCGGAATGGTTGAACGTGGTATGCGGGTGATGTTTGTCTGTCC 21078 || || || || | | || |||| ||||||||||| || |||||||| || Sbjct 35411 GGCTGCTTTTGTTGCAGATGGTCTGGTGAGCCGTGGTATGCGCGTTCTGTTTGTCGCCCC 35470 Query 21079 GTACACCATCCTGCTGAACCAGACAGCGGAACGTTTCACCGAATACGGTTTGCCGTGGGA 21138 |||||||||||| | || ||||| || | || || | | || || | ||| || Sbjct 35471 TTACACCATCCTGATCAATCAGACCGCACAGCGCTTTGCTCAGTATGGCCTTCCGGAAGA 35530 Query 21139 AGAAATCAGTTTTGTATGGCGTGATCACCCTAACTATGACCCGTCACGACTGATTCAGAT 21198 | ||||| ||| | |||||||||||||| ||||||||||| | | ||| ||||| Sbjct 35531 CCAGATCAGCTTTATCTGGCGTGATCACCCGAACTATGACCCCAGCCTGCAGATCCAGAT 35590 Query 21199 TGCCAGTGCCGACACGCTGATCCGTCGTGAGTTTCCTGACAACATCGATCTGCTGATCAT 21258 |||||| ||||||||||||||||| || || || || | | |||||||||||||| || Sbjct 35591 TGCCAGCGCCGACACGCTGATCCGCCGGGAATTCCCGCAGGATATCGATCTGCTGATTAT 35650 Query 21259 CGATGAAGCACACATG---AAGCGTCGTGCGTTACTT---GAGGTTATCCGGGACA---- 21308 ||| ||||| || || || || || | || || ||| || ||| || Sbjct 35651 CGACGAAGCCCATCTGCGCAAACGCCG--CATT-CTGAAAGAGATTGAGCGGATCACCAC 35707 Query 21309 -GAGACATCAG----GGTTCTTGGACTTTCCGGCACCCCGTTCGCAGCCTGGATGGGGAA 21363 || || || |||| | || || ||||| |||||||| || | | ||||||| Sbjct 35708 GGAAACCAAAGCGAAGGTTATAGGCCTGTCCGGAACCCCGTTTTCACCTTTCCTGGGGAA 35767 Query 21364 GTACTACGAATGCCTGATCAAGCCTACAACGATTCGTGAACTTATTCAGCGTGGTGATCT 21423 |||||| | |||||||||| || || || || | || ||||| |||||||||||||| Sbjct 35768 TTACTACCAGCGCCTGATCAAACCGACCACCATCGGCGAGCTTATCCAGCGTGGTGATCT 35827 Query 21424 GAGCGATTACGAGTTTTTTGCCCCCTCAATGCCTGATCTGGCTGGCGTAAAAACCA--GT 21481 ||| |||||||||| | |||||| ||| ||| |||||| ||||| || || | | Sbjct 35828 GAGTAATTACGAGTTCTATGCCCCGACAAAGCCGGATCTGAAAGGCGTTAAGACGAAAGC 35887 Query 21482 AACACCGTATT-TGGACGGGATTACAACGAGGAGCAGCTCGCATCCATCATGGGGAGTTC 21540 | | | | ||| | || ||| |||||| ||| | || |||||| | | || Sbjct 35888 GTCGATGGAGTATGGCAGCGACTACGACGAGGCACAGTTGGCTGAAATCATGTGCGGATC 35947 Query 21541 GGATCTGGTTGGCGATATCGTTCGCAACTGGCTTGAGAATGGCGAGGATTTGCCGACGAT 21600 ||| ||||| ||||| || || |||||||| || || |||| | ||||| | Sbjct 35948 GGAGCTGGTCGGCGACATTGTCGATAACTGGCTGCGTAACGGGCAGGACCTTCCGACAGT 36007 Query 21601 CTGCTTTTGCGTGAATGTTGCGCATGCGAATTTTGTTACCCGTGAGTTTTTACAGGCCGG 21660 || || || ||| || || || || | || || |||| | || || Sbjct 36008 GGCGTTCTGTGTCAATAAGGCCCACGCCAACTACGTCACGATGCAGTTCAACAAAGCGGG 36067 Query 21661 TATTGGCGCAGAGGTGATGACGGCAGATACCCTCCATGATGAACGACAGGACATCATTCG 21720 | || ||||||||| ||| || || | || || |||||||| || || | Sbjct 36068 CGTGAATGCCGAGGTGATGGTGGCCGAAACGCCGCACGAAGAACGACAACTGATGATCCA 36127 Query 21721 CCGTTTTGAAGAGGGCGCGACCAAAATAATTGTCAACGTTGGTGTACTGGTTGCGGGATT 21780 ||| |||||| |||||||| ||||| ||| ||| ||| ||||||||||| ||||| || Sbjct 36128 CCGCTTTGAAACTGGCGCGACAAAAATCATTATCAGCGTCGGTGTACTGGTGGCGGGCTT 36187 Query 21781 TGACAGCGATGTTCGCTGCCTGATCTACGCCCGTCCGACAAAATCAGAAATCCGTTGGTT 21840 || || || ||||||||| |||| |||||||| || || ||| ||||| || ||||| Sbjct 36188 CGATAGTGACGTTCGCTGCGTGATTTACGCCCGCCCTACCAAAAGCGAAATTCGCTGGTT 36247 Query 21841 GCAGTGCA-TAGGTAGAGCGTTACGTACAGCCCCAGGTAAAAAACGTGCGT---TGATTT 21896 |||| ||| | || | | | || || || ||||| ||| | ||| | | || | Sbjct 36248 GCAG-GCACTGGGGCGTGGCCTTCGCACTGCACCAGGCAAAGA---TGCCTGTCTCATCT 36303 Query 21897 TCGACCATTCTGGTACGGTTCATCGGCTGGGCTTCCCCGAGGATATCGAGTATGACGAAC 21956 |||| || ||| || || ||||| ||||| || || || | ||| ||||| ||| | Sbjct 36304 TCGATCACAGTGGCACCGTCCATCGCCTGGGATTTCCTGACGCTATTGAGTACAGCGACC 36363 Query 21957 TGCCGGGTAAAAATGACGGAATGAAAGCGTCTGCTGGCGGTG--GC-GAGGTTAAGGCTG 22013 | ||| |||| || || ||||||| | | |||| | ||| || |||| | || | Sbjct 36364 TCCCGTCGAAAAGCGATGGCATGAAAGAGGCCGCTGCCCGTGTAGCTGAGGATCGGGAGG 36423 Query 22014 AGAAACTTCCCAGAGAATGCCCCAAATGCCACTTCATGAAGCCTGCTGGTGTACACATGT 22073 | |||||||| | |||||||| |||||| |||||||| ||||| || || || | | Sbjct 36424 AAAAACTTCCGAAAGAATGCCATGGATGCCATTTCATGAAACCTGCAGGGGTGTACGTCT 36483 Query 22074 GTCCCAAATGTGGGTTTCGTCCTCTTGGTGGCGATGATGTGGCAACAGA-CCGCGATCGA 22132 | || |||||||| ||| || || | || || ||||| | ||| || ||| | || Sbjct 36484 GCCCGAAATGTGGTTTTAAGCCGCTGGTCGGTGAGGATGTTGAAACCGATACGC-AGCGG 36542 Query 22133 AAACTC-TCTCGCGTAAACAAAGGGAAACGCGAATACAGTCGCGAGGAAAAGCAGCGTTG 22191 || || || ||| | | |||| | | |||| ||| || ||| || Sbjct 36543 AATATCAAAAAGCTCAAAAAGGGCGAAAAG-GGTTACACCAAAACGGACAAACAGTCCTG 36601 Query 22192 GTGGAGTGAGATCAAGGGGTATCAGAATTACCGCAACGCGACGGGTAAACCCCTGAGTGA 22251 ||||||| ||||||| |||||| |||| ||| ||| ||||| | ||||| Sbjct 36602 GTGGAGTCAGATCAAATTTTATCAGCGCCACCGTGCATCGATGGGAAAACCTGTCAGTGA 36661 Query 22252 CGGATGGTGCGCTCATACCTAC 22273 || ||||| |||||||||||| Sbjct 36662 TGGGTGGTGTGCTCATACCTAC 36683 Score = 295 bits (326), Expect = 3e-75 Identities = 357/483 (74%), Gaps = 11/483 (2%) Strand=Plus/Plus Query 24585 ATGCGTGATATCCGGCAGGTTCTTGAGCGCTGGGGGGCATGGGCGGCAAATAACCATGAG 24644 ||||| || |||| ||||| | || |||||||| || ||||| || ||||| ||||| Sbjct 159 ATGCGAGACATCCAACAGGTATTAGAACGCTGGGGAGCGTGGGCAGCCAATAATCATGAA 218 Query 24645 GATGTTACATGGTCGCCCATTGCTGCCGGATTTAAGAGGCTGATCCCCGAAAAAGTAAAA 24704 |||||| | ||| |||| ||||| || |||||||| | || | || | | |||||| Sbjct 219 GATGTTGCCTGGGCGCCGATTGCCGCTGGATTTAAAGGACTCCTTCCGGCCAGGGTAAAA 278 Query 24705 TCACGTCCACAGTGTTGTGACGATGACGCGATGATTATATGCGGGTGTATGGCTCGCCTT 24764 || || |||||||||||||| ||||| |||||| | | |||||||| || || | || Sbjct 279 TCGCGGCCACAGTGTTGTGATGATGATGCGATGGTCGTCTGCGGGTGCATCGCCAGGCTG 338 Query 24765 AACAGGAACAACAGCGATCTGCATGACTTGCTGGTTGATTATTACGTGTTGGGGGAGACG 24824 |||| ||||| ||||| |||| || ||||||| |||||||||||| ||||| |||| Sbjct 339 AACAAAAACAATCGCGATTTGCACGATCTGCTGGTGGATTATTACGTGATGGGGATGACG 398 Query 24825 TTCATGGCGCTGGCACGGAAACATGGGTGCTCTGACACCTGTATAGGTAAACGCCTTCAC 24884 || ||||||||||| || || ||||| ||||| || | ||| |||||| | || Sbjct 399 TTTATGGCGCTGGCTCGAAAGCATGGTTGCTCAGATGGCCATATCGGTAAAAAGTTACAA 458 Query 24885 AAAGCGGAGGGGATTGTTGAAGGCATGCTGATGATGCTGGGAGTGAGGCTTGAGATGGAT 24944 ||||| ||||| ||||||||||||||||||||||||| | || | || ||||||||| Sbjct 459 AAAGCCGAGGGAGTTGTTGAAGGCATGCTGATGATGCTCGATGTCCGACTGGAGATGGAT 518 Query 24945 CGGTATGTTGAGCGTGAATTGCCGGGAGGGAGAACCTCTGTATTTTATCAGCG-AAAAAA 25003 |||| ||| |||||| |||| | ||| ||| ||||| | |||| Sbjct 519 AGGTACGTTTCCCGTGAA---CCGGAATCCAGA----CTG---GCGGCCAGCGCATAAAA 568 Query 25004 TAGTTTACGATCGTAAAAATCTGCATATCATGATAAGAGTGGTTACATTGCCACGCTGCT 25063 |||||||| |||||||| | | ||||| || |||||||||| || | | ||| ||| Sbjct 569 AAGTTTACGTACGTAAAAAACCGGATATCCTGTTAAGAGTGGTCACTTCGACACAACGCT 628 Query 25064 TAA 25066 ||| Sbjct 629 TAA 631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200849879078828