Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_028685.1
Length=62851
Score E
Sequences producing significant alignments: (Bits) Value
seq4723 479 1e-130
seq9686 430 5e-116
>seq4723
Length=43540
Score = 479 bits (530), Expect = 1e-130
Identities = 517/685 (75%), Gaps = 0/685 (0%)
Strand=Plus/Minus
Query 11622 CCATTGTTCTCCAAATACAAAACCAATTTCTGCCAGTGCTTCGTCCATTTTGTCGATGAA 11681
||||||||| ||| || || || ||||| || || || || ||||| || ||||||||
Sbjct 2279 CCATTGTTCCCCATATGTGAAGCCGATTTCAGCAAGCGCCTCATCCATCTTCTCGATGAA 2220
Query 11682 CTCCGGCACCATCTCATCAAAACTCGCCATGTACTTTTCATCCCGCTCGACCACGACATA 11741
|||||||||||||| |||||| |||||||| || || || || ||||||| |||||
Sbjct 2219 TTCCGGCACCATCTCGTCAAAATCAGCCATGTATTTGTCGTCACGTTCGACCAAGACATG 2160
Query 11742 ATGCAGGCCTTCACGCTTCATGCGTGGGTCGTAGTTGGCGAAGTACCAGGCGTCCTTGTC 11801
|| | |||||| || ||||||||||||||||| ||||| ||| ||||||||| ||| |
Sbjct 2159 GTGGATGCCTTCGCGTTTCATGCGTGGGTCGTAATTGGCAAAGAACCAGGCGTTCTTTCC 2100
Query 11802 TGTAACCCACATGCTGAATTGCACCTGGGCCATGTAAGCAGGCTTGATAGCGTCAAAGCC 11861
|||| |||||||||| | || |||||||||||||| || | |||||| || ||||||||
Sbjct 2099 GGTAATCCACATGCTGTACTGAACCTGGGCCATGTACGCGGACTTGATGGCCTCAAAGCC 2040
Query 11862 GCCAAGCCGGAACTTCATGAAGTCGCGGGAAGTAAAGGGGCATTTAAGCTCAAGACCGTT 11921
|||||||| ||| ||||||||||||||||| || || ||||| || || || || ||
Sbjct 2039 GCCAAGCCTGAATTTCATGAAGTCGCGGGAGGTGAAAGGGCACTTCAGTTCGAGGCCAAA 1980
Query 11922 ACCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATGCTTTCGTCACGAAAAAT 11981
||| |||||| | || || ||||||||||| |||||||| | ||||| || || |
Sbjct 1979 GTCGTTACTGCACAGCCCGTCAGGAGAGCAGGCCGTGCGCATATTCTCGTCGCGGAAGAG 1920
Query 11982 TATGGGTGTTTCCGAGACGGTAACATCCGCGATAAATTCAAAGAGGGCACGGGCATCATC 12041
|| || | || ||||||||| | | | || || || |||| || || || ||
Sbjct 1919 GATCGGCGACTCTATGACGGTAACGCCGGTCGTGAACTCGAAAAGGGTTCGCGCGTCTTC 1860
Query 12042 TTCATATTGCTTTCCCCATGCGAGCGACTTAGCGTTAACTTCCGGTGCCACGCCAGTACA 12101
||| |||| || |||||||| |||||||| |||||||||||||| | ||||| || ||
Sbjct 1859 TTCGAATTGTTTACCCCATGCCAGCGACTTGGCGTTAACTTCCGGCGATACGCCGGTGCA 1800
Query 12102 AACTTCAGCCAGCAGGGTGTGGAAGTATGACATTTTTGTATCAGGCCATTTGCTGCCGGA 12161
||||| |||||||||||||||||||| |||||||| | || | ||| || | |||||
Sbjct 1799 GACTTCCGCCAGCAGGGTGTGGAAGTAAGACATTTTCATGTCCGTCCACTTCTTCCCGGA 1740
Query 12162 ACGTGGCTTTGCTATCACATTGTGAACTTCTGAAGCAGTGATAACACCGAGTCTCAGCTT 12221
|| || || | || || ||| ||||| || || || || || ||||| | |||| |
Sbjct 1739 GCGAGGTTTGGAAATTACGTTGCTGACTTCAGATGCCGTAATTACGCCGAGGCGCAGCCT 1680
Query 12222 GTGCCATCCATCATCGCCCTGGTCGAGGCTGGTAATATCCACGCCAGTTCGCTGGAGAAT 12281
||||| | |||||||| || |||| | || | || | ||| || || || ||
Sbjct 1679 TTGCCACGCTTCATCGCCTTGCTCGACCGTTGTTACGTCAATGCCCGTCCGGGCCAGGAT 1620
Query 12282 AATTTCTGGTGTCATGACACGGCCT 12306
|||||| ||||||||| ||||||
Sbjct 1619 AATTTCAGGTGTCATGCTGCGGCCT 1595
Score = 120 bits (132), Expect = 1e-22
Identities = 481/736 (65%), Gaps = 35/736 (5%)
Strand=Plus/Minus
Query 213 CATCCATGCACCATAAACATTGTAGACCATGCTGGCGCTGGAG--TGCCCCATCTGTGAC 270
||||||| ||| ||||| | | | ||||| ||| ||| || |||||||| ||||||
Sbjct 8131 CATCCATTTACCGTAAACCTGGAATACCAT-CTG-CGCATCAGCATGCCCCATTTGTGAC 8074
Query 271 GCAATAAATGTCGGGTTTGCTCCGGCAGATAAAGCCCAGCACGCATAGGTATGGCGTGAC 330
||||| |||| ||||| || ||||| | || | |||||| || || || || | |||
Sbjct 8073 GCAATGAATGCTGGGTTGGCACCGGCCGTCAATGACCAGCAAGCGTAAGTGTGCCTGGAC 8014
Query 331 TGATACGCTTTACGGGATCGGATACCCGCTCTTTTTATTGCTGAATCCCATGTCGCTCCG 390
||||| | || | | || || || || | ||||| ||||| |||||||| || |
Sbjct 8013 TGATATGACTTCCTGTGTCTTATGCCTGCGCGTTTTACTGCTGTGTCCCATGTTTGTCTG 7954
Query 391 ATGGAGCTTACCGCGTAGTTAATACCCGCCTTGT--GATTCTTGCG--AAC-GATTTGCG 445
| || || | | ||| | | |||| | | | ||| | | ||| || |
Sbjct 7953 ACAGAATCGACAGTGAAGTGA-TCGCCGCATACTCCGGTTCGGGAGGTAACAGAA----G 7899
Query 446 GACAGAAA-ACAAAAGTGCACTCGTGCAAAATTGTTCTT----CCGTACTCGCGTAATTT 500
|| ||||| ||||| || || |||||| || | ||| || || || || | |
Sbjct 7898 GA-AGAAACACAAAGGTACATTCGTGC----TTTTCCTTTTTACCATATTCCCGCAGGTG 7844
Query 501 AACAGTGATCTGATGCTGCCTGCCAAGACGAGTAAGCATCGCCTGGTTTTTAAGTGCTTC 560
|||| | | |||| | | ||||| || | | | | || |||| || || ||
Sbjct 7843 AACATCCAGCACGTGCTCCTTTCCAAGTCGTGATATCTCCAGTTGACTTTTGAGCGCCTC 7784
Query 561 AATTGCTGGTGCCAGAAGATGTATAACCCGGTTAGTGCCTGCGTCAGTCTTTGGTAGCGT 620
||||| ||| | || |||||||||| ||| || || || | |||||||| | |||
Sbjct 7783 TATTGCCGGTTTAATGAGGTGTATAACCCTGTTGGTTCCAGCCTGGGTCTTTGGAACCGT 7724
Query 621 AAAATCACCTATTTTTGTAAAATTTCTTCGCACTGTTATCGTGCCAGCTTTCAGGTCGAT 680
||| | | | || | || ||||| | | | ||||| ||| ||||||||||||
Sbjct 7723 AAATTTATCC---TTCGCCAAGTTTCTCCTGATCATCATCGTCCCACTTTTCAGGTCGAT 7667
Query 681 ATCCTCCCATGC--AAGTGCGGCAATTTCACCGTGTCGCATCCCTGTAAAAACAGCCACT 738
||||||||| | ||| || ||| || || ||| | |||||| | |||| |
Sbjct 7666 ATCCTCCCAGCCTAAAGAGC-ACAA-CTCCCCAGGTCTAAGTCCTGTATAGACAGAAAGC 7609
Query 739 GTCCAGAGGTTTTTGGTCTGTTGATGATGGCAGGCATCAATGAGACGGCTAAACTCATCT 798
| ||| || ||||| | ||| || | |||| ||||| ||||| | | ||||| ||
Sbjct 7608 GCCCACAGATTTTTAGCCTGCTGGCTACGGCATGCATCGATGAGCCTGACGAACTCCTCC 7549
Query 799 CTGGTCAGTGGATCCGGCACTGGTTTTGATTTCCTCAGCGGTGTTATTGAATTAAACGGG 858
|| | || || || || || | || | ||| ||||||| ||| || |||||
Sbjct 7548 CTTGAAAGCGGGTCAGGAACAACTCGCGACTCCCTGAGCGGTGATATGCCTTTGAACGGA 7489
Query 859 TTTTTCTCCAGATACCCGTTTTCGGCGGCAAAGCTG-AACATTCCG-GCTGTTGTTGTCA 916
|| | || | ||| || || || | |||| ||| |||| | || | | | | ||||
Sbjct 7488 TTATCATCGATATAGCCATTCTCCATGCCAAA-CTGAAACACTGCGTACAGGT-TGGTCA 7431
Query 917 TGTAATAGTTCACTGT 932
|||| | |||||||||
Sbjct 7430 TGTAGTTGTTCACTGT 7415
Score = 91.5 bits (100), Expect = 6e-14
Identities = 90/115 (78%), Gaps = 1/115 (1%)
Strand=Plus/Minus
Query 16070 TCCTGCCAGTGTTGCCCGTTCTCACGCCGTTCTCGCTCTCGCGCGGGGATA-CTCTCTCA 16128
||| ||||||||||||||||| |||||| | |||||||| || |||| || | |||||
Sbjct 42447 TCCCGCCAGTGTTGCCCGTTCCCACGCCTTAATCGCTCTCACGAGGGGGTAGCCTTCTCA 42388
Query 16129 TCGACCGGATCGCACCCGATGATACAGCACGTTTACGTGTAGGGGTCTAAACAGG 16183
| |||||||||| | | |||||| | | ||| | || ||||||||||||||
Sbjct 42387 CCAACCGGATCGCCGCTGGTGATACGCCGCATTTGTGCGTTGGGGTCTAAACAGG 42333
>seq9686
Length=37809
Score = 430 bits (476), Expect = 5e-116
Identities = 949/1402 (68%), Gaps = 38/1402 (3%)
Strand=Plus/Plus
Query 20900 ATGCTGAAAATCACCCCAAACTTTGCTCAGGAGCGCGGTTTAAACCAGCTGCGGCACCAG 20959
||||| || ||||| ||||| ||||| ||||| |||| | ||| |||||| | |
Sbjct 35292 ATGCTTAACATCACACCAAATTTTGCACAGGAACGCGCGCTGAACATGCTGCGCCGTGAC 35351
Query 20960 TGGAAACTGCATCGCA-CGTACCTGATGTATGCACCCACTGGCTCTGGCAAAACTGGTCT 21018
||||| | | || | ||| | |||||||| || || ||| |||||||| || ||
Sbjct 35352 TGGAAGGCGTA-CGAATCGTTCATGATGTATATGCCGACCGGCAGCGGCAAAACCGGGCT 35410
Query 21019 TGCAGCATTCGTCACTGCCGGAATGGTTGAACGTGGTATGCGGGTGATGTTTGTCTGTCC 21078
|| || || || | | || |||| ||||||||||| || |||||||| ||
Sbjct 35411 GGCTGCTTTTGTTGCAGATGGTCTGGTGAGCCGTGGTATGCGCGTTCTGTTTGTCGCCCC 35470
Query 21079 GTACACCATCCTGCTGAACCAGACAGCGGAACGTTTCACCGAATACGGTTTGCCGTGGGA 21138
|||||||||||| | || ||||| || | || || | | || || | ||| ||
Sbjct 35471 TTACACCATCCTGATCAATCAGACCGCACAGCGCTTTGCTCAGTATGGCCTTCCGGAAGA 35530
Query 21139 AGAAATCAGTTTTGTATGGCGTGATCACCCTAACTATGACCCGTCACGACTGATTCAGAT 21198
| ||||| ||| | |||||||||||||| ||||||||||| | | ||| |||||
Sbjct 35531 CCAGATCAGCTTTATCTGGCGTGATCACCCGAACTATGACCCCAGCCTGCAGATCCAGAT 35590
Query 21199 TGCCAGTGCCGACACGCTGATCCGTCGTGAGTTTCCTGACAACATCGATCTGCTGATCAT 21258
|||||| ||||||||||||||||| || || || || | | |||||||||||||| ||
Sbjct 35591 TGCCAGCGCCGACACGCTGATCCGCCGGGAATTCCCGCAGGATATCGATCTGCTGATTAT 35650
Query 21259 CGATGAAGCACACATG---AAGCGTCGTGCGTTACTT---GAGGTTATCCGGGACA---- 21308
||| ||||| || || || || || | || || ||| || ||| ||
Sbjct 35651 CGACGAAGCCCATCTGCGCAAACGCCG--CATT-CTGAAAGAGATTGAGCGGATCACCAC 35707
Query 21309 -GAGACATCAG----GGTTCTTGGACTTTCCGGCACCCCGTTCGCAGCCTGGATGGGGAA 21363
|| || || |||| | || || ||||| |||||||| || | | |||||||
Sbjct 35708 GGAAACCAAAGCGAAGGTTATAGGCCTGTCCGGAACCCCGTTTTCACCTTTCCTGGGGAA 35767
Query 21364 GTACTACGAATGCCTGATCAAGCCTACAACGATTCGTGAACTTATTCAGCGTGGTGATCT 21423
|||||| | |||||||||| || || || || | || ||||| ||||||||||||||
Sbjct 35768 TTACTACCAGCGCCTGATCAAACCGACCACCATCGGCGAGCTTATCCAGCGTGGTGATCT 35827
Query 21424 GAGCGATTACGAGTTTTTTGCCCCCTCAATGCCTGATCTGGCTGGCGTAAAAACCA--GT 21481
||| |||||||||| | |||||| ||| ||| |||||| ||||| || || | |
Sbjct 35828 GAGTAATTACGAGTTCTATGCCCCGACAAAGCCGGATCTGAAAGGCGTTAAGACGAAAGC 35887
Query 21482 AACACCGTATT-TGGACGGGATTACAACGAGGAGCAGCTCGCATCCATCATGGGGAGTTC 21540
| | | | ||| | || ||| |||||| ||| | || |||||| | | ||
Sbjct 35888 GTCGATGGAGTATGGCAGCGACTACGACGAGGCACAGTTGGCTGAAATCATGTGCGGATC 35947
Query 21541 GGATCTGGTTGGCGATATCGTTCGCAACTGGCTTGAGAATGGCGAGGATTTGCCGACGAT 21600
||| ||||| ||||| || || |||||||| || || |||| | ||||| |
Sbjct 35948 GGAGCTGGTCGGCGACATTGTCGATAACTGGCTGCGTAACGGGCAGGACCTTCCGACAGT 36007
Query 21601 CTGCTTTTGCGTGAATGTTGCGCATGCGAATTTTGTTACCCGTGAGTTTTTACAGGCCGG 21660
|| || || ||| || || || || | || || |||| | || ||
Sbjct 36008 GGCGTTCTGTGTCAATAAGGCCCACGCCAACTACGTCACGATGCAGTTCAACAAAGCGGG 36067
Query 21661 TATTGGCGCAGAGGTGATGACGGCAGATACCCTCCATGATGAACGACAGGACATCATTCG 21720
| || ||||||||| ||| || || | || || |||||||| || || |
Sbjct 36068 CGTGAATGCCGAGGTGATGGTGGCCGAAACGCCGCACGAAGAACGACAACTGATGATCCA 36127
Query 21721 CCGTTTTGAAGAGGGCGCGACCAAAATAATTGTCAACGTTGGTGTACTGGTTGCGGGATT 21780
||| |||||| |||||||| ||||| ||| ||| ||| ||||||||||| ||||| ||
Sbjct 36128 CCGCTTTGAAACTGGCGCGACAAAAATCATTATCAGCGTCGGTGTACTGGTGGCGGGCTT 36187
Query 21781 TGACAGCGATGTTCGCTGCCTGATCTACGCCCGTCCGACAAAATCAGAAATCCGTTGGTT 21840
|| || || ||||||||| |||| |||||||| || || ||| ||||| || |||||
Sbjct 36188 CGATAGTGACGTTCGCTGCGTGATTTACGCCCGCCCTACCAAAAGCGAAATTCGCTGGTT 36247
Query 21841 GCAGTGCA-TAGGTAGAGCGTTACGTACAGCCCCAGGTAAAAAACGTGCGT---TGATTT 21896
|||| ||| | || | | | || || || ||||| ||| | ||| | | || |
Sbjct 36248 GCAG-GCACTGGGGCGTGGCCTTCGCACTGCACCAGGCAAAGA---TGCCTGTCTCATCT 36303
Query 21897 TCGACCATTCTGGTACGGTTCATCGGCTGGGCTTCCCCGAGGATATCGAGTATGACGAAC 21956
|||| || ||| || || ||||| ||||| || || || | ||| ||||| ||| |
Sbjct 36304 TCGATCACAGTGGCACCGTCCATCGCCTGGGATTTCCTGACGCTATTGAGTACAGCGACC 36363
Query 21957 TGCCGGGTAAAAATGACGGAATGAAAGCGTCTGCTGGCGGTG--GC-GAGGTTAAGGCTG 22013
| ||| |||| || || ||||||| | | |||| | ||| || |||| | || |
Sbjct 36364 TCCCGTCGAAAAGCGATGGCATGAAAGAGGCCGCTGCCCGTGTAGCTGAGGATCGGGAGG 36423
Query 22014 AGAAACTTCCCAGAGAATGCCCCAAATGCCACTTCATGAAGCCTGCTGGTGTACACATGT 22073
| |||||||| | |||||||| |||||| |||||||| ||||| || || || | |
Sbjct 36424 AAAAACTTCCGAAAGAATGCCATGGATGCCATTTCATGAAACCTGCAGGGGTGTACGTCT 36483
Query 22074 GTCCCAAATGTGGGTTTCGTCCTCTTGGTGGCGATGATGTGGCAACAGA-CCGCGATCGA 22132
| || |||||||| ||| || || | || || ||||| | ||| || ||| | ||
Sbjct 36484 GCCCGAAATGTGGTTTTAAGCCGCTGGTCGGTGAGGATGTTGAAACCGATACGC-AGCGG 36542
Query 22133 AAACTC-TCTCGCGTAAACAAAGGGAAACGCGAATACAGTCGCGAGGAAAAGCAGCGTTG 22191
|| || || ||| | | |||| | | |||| ||| || ||| ||
Sbjct 36543 AATATCAAAAAGCTCAAAAAGGGCGAAAAG-GGTTACACCAAAACGGACAAACAGTCCTG 36601
Query 22192 GTGGAGTGAGATCAAGGGGTATCAGAATTACCGCAACGCGACGGGTAAACCCCTGAGTGA 22251
||||||| ||||||| |||||| |||| ||| ||| ||||| | |||||
Sbjct 36602 GTGGAGTCAGATCAAATTTTATCAGCGCCACCGTGCATCGATGGGAAAACCTGTCAGTGA 36661
Query 22252 CGGATGGTGCGCTCATACCTAC 22273
|| ||||| ||||||||||||
Sbjct 36662 TGGGTGGTGTGCTCATACCTAC 36683
Score = 295 bits (326), Expect = 3e-75
Identities = 357/483 (74%), Gaps = 11/483 (2%)
Strand=Plus/Plus
Query 24585 ATGCGTGATATCCGGCAGGTTCTTGAGCGCTGGGGGGCATGGGCGGCAAATAACCATGAG 24644
||||| || |||| ||||| | || |||||||| || ||||| || ||||| |||||
Sbjct 159 ATGCGAGACATCCAACAGGTATTAGAACGCTGGGGAGCGTGGGCAGCCAATAATCATGAA 218
Query 24645 GATGTTACATGGTCGCCCATTGCTGCCGGATTTAAGAGGCTGATCCCCGAAAAAGTAAAA 24704
|||||| | ||| |||| ||||| || |||||||| | || | || | | ||||||
Sbjct 219 GATGTTGCCTGGGCGCCGATTGCCGCTGGATTTAAAGGACTCCTTCCGGCCAGGGTAAAA 278
Query 24705 TCACGTCCACAGTGTTGTGACGATGACGCGATGATTATATGCGGGTGTATGGCTCGCCTT 24764
|| || |||||||||||||| ||||| |||||| | | |||||||| || || | ||
Sbjct 279 TCGCGGCCACAGTGTTGTGATGATGATGCGATGGTCGTCTGCGGGTGCATCGCCAGGCTG 338
Query 24765 AACAGGAACAACAGCGATCTGCATGACTTGCTGGTTGATTATTACGTGTTGGGGGAGACG 24824
|||| ||||| ||||| |||| || ||||||| |||||||||||| ||||| ||||
Sbjct 339 AACAAAAACAATCGCGATTTGCACGATCTGCTGGTGGATTATTACGTGATGGGGATGACG 398
Query 24825 TTCATGGCGCTGGCACGGAAACATGGGTGCTCTGACACCTGTATAGGTAAACGCCTTCAC 24884
|| ||||||||||| || || ||||| ||||| || | ||| |||||| | ||
Sbjct 399 TTTATGGCGCTGGCTCGAAAGCATGGTTGCTCAGATGGCCATATCGGTAAAAAGTTACAA 458
Query 24885 AAAGCGGAGGGGATTGTTGAAGGCATGCTGATGATGCTGGGAGTGAGGCTTGAGATGGAT 24944
||||| ||||| ||||||||||||||||||||||||| | || | || |||||||||
Sbjct 459 AAAGCCGAGGGAGTTGTTGAAGGCATGCTGATGATGCTCGATGTCCGACTGGAGATGGAT 518
Query 24945 CGGTATGTTGAGCGTGAATTGCCGGGAGGGAGAACCTCTGTATTTTATCAGCG-AAAAAA 25003
|||| ||| |||||| |||| | ||| ||| ||||| | ||||
Sbjct 519 AGGTACGTTTCCCGTGAA---CCGGAATCCAGA----CTG---GCGGCCAGCGCATAAAA 568
Query 25004 TAGTTTACGATCGTAAAAATCTGCATATCATGATAAGAGTGGTTACATTGCCACGCTGCT 25063
|||||||| |||||||| | | ||||| || |||||||||| || | | ||| |||
Sbjct 569 AAGTTTACGTACGTAAAAAACCGGATATCCTGTTAAGAGTGGTCACTTCGACACAACGCT 628
Query 25064 TAA 25066
|||
Sbjct 629 TAA 631
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 200849879078828
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