Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_028696.2 Length=41338 Score E Sequences producing significant alignments: (Bits) Value seq44067 1705 0.0 seq4723 655 0.0 >seq44067 Length=1252 Score = 1705 bits (1890), Expect = 0.0 Identities = 1130/1252 (90%), Gaps = 1/1252 (0%) Strand=Plus/Plus Query 39378 TGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTTCCAGTATCGATTTTCCGA 39437 |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| || Sbjct 1 TGAAGTGGTCAACAAAAACTGGCCACCGCGTTAGAGTTTT-TCCAGTATCGATTTTCTGA 59 Query 39438 TTCGTTTGGTGGTAACCCACCATTATATTCGTGCGGTCTTAGTGCGCTGTAATATCCAAC 39497 ||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||| Sbjct 60 TTCGTTTGGTGGTAATCCACCGTTATATTCGTGCGGCCTGAGTGCGCTGTAATATCCAAC 119 Query 39498 GATATAGTCCGTTATTGCGTGAGCTGCATCGCTGAAGCTTACATAGCCCGTCGCCGGCAC 39557 ||| ||||||||||| ||||||| ||||||||||||||||| || || ||| | || || Sbjct 120 GATGTAGTCCGTTATGGCGTGAGTCGCATCGCTGAAGCTTACGTAACCTGTCACTGGTAC 179 Query 39558 CCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCAGTTTCC 39617 |||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||| Sbjct 180 CCATTCGTTCTTCAGACTCCGGAAGAAGCGTTCCATTGGGCTATTATCCCAGCAGTTTCC 239 Query 39618 ACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAACTGCCTGCT 39677 |||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||| Sbjct 240 ACGCCGACTCATACTCTGTTTGATCCGGTATCGCCACAGCAACTGCCGGAACTGCCTGCT 299 Query 39678 CGTATAATGACTGCCTTGATCGCTGTGGAACATCACCCCGACGGGCTTACCACGGGTTTC 39737 ||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||||| Sbjct 300 CGTATAATGACTGCCCTGATCACTGTGGAACATCACTCCGACGGGCTTACCACGCGTTTC 359 Query 39738 CCATGCCATTTCCAGTGCTTTCATGGTAAGCCTGCTGTCCGGCGAGAACGACATGGCCCA 39797 ||||||||||||||| || |||||||| || ||||||||||| ||||||||||| ||||| Sbjct 360 CCATGCCATTTCCAGCGCCTTCATGGTGAGTCTGCTGTCCGGTGAGAACGACATTGCCCA 419 Query 39798 GCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCAGCGCTTACC 39857 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 420 GCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCCAGGTACGCCCAGCGCTTACC 479 Query 39858 CGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCACGGCGAACTG 39917 ||||||||||||||||||||| |||||||||||||| |||||||| | ||||||||||| Sbjct 480 CGTCCAGATATAGGTCACATCGCCGCACCACACCTGGTTTGGCTCTCTTACGGCGAACTG 539 Query 39918 CCGTTCAAGGTAGTTAGGGATAGCAACATGTTCATGACCACCACGTTTATACCGGTAAGT 39977 ||| ||||||| |||||||||||||||||||||||||||||||| |||||||||| ||| Sbjct 540 CCGCTCAAGGTGATTAGGGATAGCAACATGTTCATGACCACCACGCTTATACCGGTGAGT 599 Query 39978 CGGCTGCTGACAGCTGACCAGCCCCAGCTCTTTCATGAGTCTGCCAGCAAGCCAGCGCCC 40037 || ||||| || ||||||||||| ||||||||||| || |||||||| ||||||||||| Sbjct 600 TGGTTGCTGGCAACTGACCAGCCCAAGCTCTTTCATTAGCCTGCCAGCGAGCCAGCGCCC 659 Query 40038 CATCTGGTAGCCTCTCTGGGTTGCCATTGTGGCGATGCTTCTTGCTCCGGCAGAGCCGTG 40097 |||||| | ||||||||| ||||||||||| |||||||| ||||||||||| || ||||| Sbjct 660 CATCTGATGGCCTCTCTGAGTTGCCATTGTCGCGATGCTCCTTGCTCCGGCCGAACCGTG 719 Query 40098 GCTGATGCCATGCAGTTCAAGTACCTGGCTGCGTAATACAGCCCGTCTGCCGTCTGGCTT 40157 ||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 720 GCTGATGTTGTGCAGCTCAAGTACCTGGCTTCGTAATACAGCCCGTCTGCCGTCTGGCTT 779 Query 40158 TTCAGGACGGTTTTTCCAGTATTTGTAGCTGCTGCGATGGACCCCGAACACATGGCAGAG 40217 ||||||||| ||||||||||||||||| || |||||||| ||||||||||| |||||||| Sbjct 780 TTCAGGACGATTTTTCCAGTATTTGTAACTACTGCGATGAACCCCGAACACGTGGCAGAG 839 Query 40218 AGTGGCCACAGGATAACGCGCCCTGAGTTTCCCGATTATCGAGAACTGTTCAGGGAGTCT 40277 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 840 AGTGGCCACAGGATAACGCGCCCTGAGCTTCCCGATTATCGAGAACTGTTCAGGGAGTCT 899 Query 40278 GACATCAAGAGCGCGGTAGCCTTTTTTAATATTTCATTTTCCATTTCAATACGTTGTAGC 40337 ||||||||||||||||||||||||||||| || || |||||||||||||||||||| ||| Sbjct 900 GACATCAAGAGCGCGGTAGCCTTTTTTAAAATATCGTTTTCCATTTCAATACGTTGCAGC 959 Query 40338 TTTTTCCTGAGCTCACGGATTTCAATTTGTTCCGGGGTAATGGGGGAGGCTTTTGGTGTT 40397 ||||| || ||||| || ||||| ||||| |||||||| || || || | |||||| ||| Sbjct 960 TTTTTTCTCAGCTCGCGTATTTCGATTTGCTCCGGGGTTATCGGAGAAGATTTTGGCGTT 1019 Query 40398 TTGCCCTGCCGCTCATCACGTAATTGTTTCACCCATCGCGTCATTGTGGAAAGGCCGACA 40457 |||||||| ||||||||||| | |||||| |||||| ||||| || |||||||| ||| Sbjct 1020 TTGCCCTGACGCTCATCACGCAGTTGTTTGACCCATTTTGTCATCGTAGAAAGGCCAACA 1079 Query 40458 TCCATAGCGCTGGCTGCATCTGCCACGGTGTAATTCTGGTCAACGACCAGTTGAGCGGAT 40517 ||||| || | ||||| | ||| || |||||| | ||||| || ||||| ||||||||| Sbjct 1080 TCCATGGCCTTCGCTGCTTGTGCAACTGTGTAAGTTTGGTCGACAACCAGCTGAGCGGAT 1139 Query 40518 TCGCGTTTAAACTCTGCGCTGAAATTTCtttttttCATTATGGCACCTGTGTTGTTCTGA 40577 |||||||| || || | || ||||||||| ||||||| |||||||||||||||||| Sbjct 1140 TCGCGTTTGAATTCAGGACTAAAATTTCTTCGTTTCATTGGAGCACCTGTGTTGTTCTGA 1199 Query 40578 GGTGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTAAACCACTTCACT 40629 | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1200 GATGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTAAACCACTTCACT 1251 Score = 1701 bits (1886), Expect = 0.0 Identities = 1130/1253 (90%), Gaps = 1/1253 (0%) Strand=Plus/Plus Query 16753 TGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTTCCAGTATCGATTTTCCGA 16812 |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| || Sbjct 1 TGAAGTGGTCAACAAAAACTGGCCACCGCGTTAGAGTTTT-TCCAGTATCGATTTTCTGA 59 Query 16813 TTCGTTTGGTGGTAACCCACCATTATATTCGTGCGGTCTTAGTGCGCTGTAATATCCAAC 16872 ||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||| Sbjct 60 TTCGTTTGGTGGTAATCCACCGTTATATTCGTGCGGCCTGAGTGCGCTGTAATATCCAAC 119 Query 16873 GATATAGTCCGTTATTGCGTGAGCTGCATCGCTGAAGCTTACATAGCCCGTCGCCGGCAC 16932 ||| ||||||||||| ||||||| ||||||||||||||||| || || ||| | || || Sbjct 120 GATGTAGTCCGTTATGGCGTGAGTCGCATCGCTGAAGCTTACGTAACCTGTCACTGGTAC 179 Query 16933 CCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCAGTTTCC 16992 |||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||| Sbjct 180 CCATTCGTTCTTCAGACTCCGGAAGAAGCGTTCCATTGGGCTATTATCCCAGCAGTTTCC 239 Query 16993 ACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAACTGCCTGCT 17052 |||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||| Sbjct 240 ACGCCGACTCATACTCTGTTTGATCCGGTATCGCCACAGCAACTGCCGGAACTGCCTGCT 299 Query 17053 CGTATAATGACTGCCTTGATCGCTGTGGAACATCACCCCGACGGGCTTACCACGGGTTTC 17112 ||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||||| Sbjct 300 CGTATAATGACTGCCCTGATCACTGTGGAACATCACTCCGACGGGCTTACCACGCGTTTC 359 Query 17113 CCATGCCATTTCCAGTGCTTTCATGGTAAGCCTGCTGTCCGGCGAGAACGACATGGCCCA 17172 ||||||||||||||| || |||||||| || ||||||||||| ||||||||||| ||||| Sbjct 360 CCATGCCATTTCCAGCGCCTTCATGGTGAGTCTGCTGTCCGGTGAGAACGACATTGCCCA 419 Query 17173 GCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCAGCGCTTACC 17232 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 420 GCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCCAGGTACGCCCAGCGCTTACC 479 Query 17233 CGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCACGGCGAACTG 17292 ||||||||||||||||||||| |||||||||||||| |||||||| | ||||||||||| Sbjct 480 CGTCCAGATATAGGTCACATCGCCGCACCACACCTGGTTTGGCTCTCTTACGGCGAACTG 539 Query 17293 CCGTTCAAGGTAGTTAGGGATAGCAACATGTTCATGACCACCACGTTTATACCGGTAAGT 17352 ||| ||||||| |||||||||||||||||||||||||||||||| |||||||||| ||| Sbjct 540 CCGCTCAAGGTGATTAGGGATAGCAACATGTTCATGACCACCACGCTTATACCGGTGAGT 599 Query 17353 CGGCTGCTGACAGCTGACCAGCCCCAGCTCTTTCATGAGTCTGCCAGCAAGCCAGCGCCC 17412 || ||||| || ||||||||||| ||||||||||| || |||||||| ||||||||||| Sbjct 600 TGGTTGCTGGCAACTGACCAGCCCAAGCTCTTTCATTAGCCTGCCAGCGAGCCAGCGCCC 659 Query 17413 CATCTGGTAGCCTCTCTGGGTTGCCATTGTGGCGATGCTTCTTGCTCCGGCAGAGCCGTG 17472 |||||| | ||||||||| ||||||||||| |||||||| ||||||||||| || ||||| Sbjct 660 CATCTGATGGCCTCTCTGAGTTGCCATTGTCGCGATGCTCCTTGCTCCGGCCGAACCGTG 719 Query 17473 GCTGATGCCATGCAGTTCAAGTACCTGGCTGCGTAATACAGCCCGTCTGCCGTCTGGCTT 17532 ||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 720 GCTGATGTTGTGCAGCTCAAGTACCTGGCTTCGTAATACAGCCCGTCTGCCGTCTGGCTT 779 Query 17533 TTCAGGACGGTTTTTCCAGTATTTGTAGCTGCTGCGATGGACCCCGAACACATGGCAGAG 17592 ||||||||| ||||||||||||||||| || |||||||| ||||||||||| |||||||| Sbjct 780 TTCAGGACGATTTTTCCAGTATTTGTAACTACTGCGATGAACCCCGAACACGTGGCAGAG 839 Query 17593 AGTGGCCACAGGATAACGCGCCCTGAGTTTCCCGATTATCGAGAACTGTTCAGGGAGTCT 17652 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 840 AGTGGCCACAGGATAACGCGCCCTGAGCTTCCCGATTATCGAGAACTGTTCAGGGAGTCT 899 Query 17653 GACATCAAGAGCGCGGTAGCCTTTTTTAATATTTCATTTTCCATTTCAATACGTTGTAGC 17712 ||||||||||||||||||||||||||||| || || |||||||||||||||||||| ||| Sbjct 900 GACATCAAGAGCGCGGTAGCCTTTTTTAAAATATCGTTTTCCATTTCAATACGTTGCAGC 959 Query 17713 TTTTTCCTGAGCTCACGGATTTCAATTTGTTCCGGGGTAATGGGGGAGGCTTTTGGTGTT 17772 ||||| || ||||| || ||||| ||||| |||||||| || || || | |||||| ||| Sbjct 960 TTTTTTCTCAGCTCGCGTATTTCGATTTGCTCCGGGGTTATCGGAGAAGATTTTGGCGTT 1019 Query 17773 TTGCCCTGCCGCTCATCACGTAATTGTTTCACCCATCGCGTCATTGTGGAAAGGCCGACA 17832 |||||||| ||||||||||| | |||||| |||||| ||||| || |||||||| ||| Sbjct 1020 TTGCCCTGACGCTCATCACGCAGTTGTTTGACCCATTTTGTCATCGTAGAAAGGCCAACA 1079 Query 17833 TCCATAGCGCTGGCTGCATCTGCCACGGTGTAATTCTGGTCAACGACCAGTTGAGCGGAT 17892 ||||| || | ||||| | ||| || |||||| | ||||| || ||||| ||||||||| Sbjct 1080 TCCATGGCCTTCGCTGCTTGTGCAACTGTGTAAGTTTGGTCGACAACCAGCTGAGCGGAT 1139 Query 17893 TCGCGTTTAAACTCTGCGCTGAAATTTCtttttttCATTATGGCACCTGTGTTGTTCTGA 17952 |||||||| || || | || ||||||||| ||||||| |||||||||||||||||| Sbjct 1140 TCGCGTTTGAATTCAGGACTAAAATTTCTTCGTTTCATTGGAGCACCTGTGTTGTTCTGA 1199 Query 17953 GGTGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTAAACCACTTCAATT 18005 | |||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1200 GATGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTAAACCACTTCACTT 1252 >seq4723 Length=43540 Score = 655 bits (726), Expect = 0.0 Identities = 655/848 (77%), Gaps = 1/848 (0%) Strand=Plus/Minus Query 36807 GCATGAATTTGGAAAATGTAGTGAAGTTTCACTTCGCAAAATCTACTCAGATAAACGATA 36866 |||||||| | ||||| | |||| || ||||| || || || || ||| | ||| Sbjct 34330 GCATGAATCTCGAAAACACACTGAAATTCCACTTTGCGAAGTCAACGATGATTAGCGACT 34271 Query 36867 TCCCTCGCGCAACAGCTTCAGAAGCGTTAACTGGCACTGATGTTATGGCAGCTATGGGTA 36926 || ||||| || || ||||| | || || || ||||| | ||||| || || || | Sbjct 34270 CTCCGCGCGCCACGGCGTCAGACTCTTTGACCGGAACTGACATCATGGCGGCGATTGGCA 34211 Query 36927 TGACTCAAAGTCGCGCATCGTTAGGTTACAGCGCGTTTCTTGGGAAGATGGAAATCAGCA 36986 |||| |||| ||||| | | || | || || || || || |||||||| |||||| Sbjct 34210 TGACACAAACACGCGCCGCTCTCGGGTTTAGTGCTTTCCTCGGCAAGATGGATATCAGCG 34151 Query 36987 GCAATGACCGTGAGAAAGCTATTGAACTGCTGACCCAATATGCACTTGAGCACTGCGATA 37046 | |||||||||| || || | ||| | || ||| ||||| | ||||| ||||| | Sbjct 34150 ACTATGACCGTGACCGGGCGATCGGACTTTTAACTCAACATGCAATGGAGCAGTGCGACA 34091 Query 37047 AGGTTTCCGCCTTACGTAAGCTCGAAAACGATATTAAACCAAAGGTAATGCAAGTGCTCG 37106 ||||| | |||||||| |||||||| | |||||||| | || || ||||||||||||| Sbjct 34090 AGGTTGCAGCCTTACGCAAGCTCGAGACAGATATTAAGCTTAAAGTGATGCAAGTGCTCG 34031 Query 37107 CAACATTCGCATTTGCTGATTACTCACGTAGCGCTGCCAGTACGCGAACCTGTGACTGCT 37166 |||| |||||||||||||| ||| |||| ||||| ||||| || ||| || ||||||| Sbjct 34030 CAACGTTCGCATTTGCTGACTACGCACGCAGCGCCGCCAGCACCAGAATGTGCGACTGCT 33971 Query 37167 GTGGTGGCAAGAAGTTTATCGATGCTGAAGTCATGACGATGAAAAGCATCGGAAAACCAT 37226 | || || || || |||| || | || ||||||||||| ||||| | ||| Sbjct 33970 GCCAGGGAAATAAATTCGTCGAAGCGAAGGTGATGACGATGAAGCATATCGGCAGACCTA 33911 Query 37227 ATCTGGAAGAGCGTAAAGAGACGGTTAAAGTTCTGTGCCGCAAATGCAAAGGGAAGGGGG 37286 | ||||| || | || |||||||| || || |||| |||||| ||||||||||||| Sbjct 33910 ACCTGGAGGAAAGGCGGGAAACGGTTAAGGTGCTTTGCCACAAATGTAAAGGGAAGGGGG 33851 Query 37287 TGCTTACCAACGCTTGCCAATGCAATGGCAAAGGCGTAGTGGTAGACAAAGAGAAAACTA 37346 |||| ||||| || || || |||||||| || ||||| ||| | |||||||||||||||| Sbjct 33850 TGCTGACCAATGCCTGTCAGTGCAATGGGAAGGGCGTGGTGCTGGACAAAGAGAAAACTA 33791 Query 37347 TTCTACAAGGTGGCGTTCCTGCGTATAAAACCTGCGGACGCTGTAATGGGCGTGGATATG 37406 |||||||||| ||||| || || |||||||| ||| | || || |||||||||||||||| Sbjct 33790 TTCTACAAGGCGGCGTGCCAGCATATAAAACGTGCAGCCGGTGCAATGGGCGTGGATATG 33731 Query 37407 CTCGTCTGCTGCCTGATAGCGTTCGAAAATACATCTGCGCAACGGTGATTGATGTTCCTG 37466 | | |||| || |||||||| || ||||| |||||||| |||||||| ||| |||||| Sbjct 33730 CCAGATTGCTACCGGATAGCGTCCGTAAATATATCTGCGCGACGGTGATGGATATTCCTG 33671 Query 37467 AAACCACATGGCGCAGGTATTACAAGGACTTCTTCGAAAGCTTGGTAGGTGAGTGCATTA 37526 ||||||| |||||||||| ||||||||| |||||||||||| |||||||||||||||||| Sbjct 33670 AAACCACGTGGCGCAGGTCTTACAAGGATTTCTTCGAAAGCCTGGTAGGTGAGTGCATTA 33611 Query 37527 AGCAGGAGGAATATGCAAATCAGATGTTGAGTAAAGTCACACAGTGATAAATATTTTCTA 37586 | ||||||||||| ||||| | |||||||| ||||||||||||| ||| ||||||||| Sbjct 33610 AACAGGAGGAATACGCAAACCGGATGTTGAACAAAGTCACACAGTAGTAAGTATTTTCTA 33551 Query 37587 CTAAAAAGACGTTCTGTAG-AATGTGCTCTTTACAAAGTGGCGATTTTTGTTTAATATCA 37645 ||| || || | ||| || | | |||||||||||||||||||||||||||| || Sbjct 33550 TGAAATAGGATTTATCTAGAAAATTACACTTTACAAAGTGGCGATTTTTGTTTAATCTCG 33491 Query 37646 TTTCTAAC 37653 |||||| Sbjct 33490 ACTCTAAC 33483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132064848847400