Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_028696.2
Length=41338
Score E
Sequences producing significant alignments: (Bits) Value
seq44067 1705 0.0
seq4723 655 0.0
>seq44067
Length=1252
Score = 1705 bits (1890), Expect = 0.0
Identities = 1130/1252 (90%), Gaps = 1/1252 (0%)
Strand=Plus/Plus
Query 39378 TGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTTCCAGTATCGATTTTCCGA 39437
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||
Sbjct 1 TGAAGTGGTCAACAAAAACTGGCCACCGCGTTAGAGTTTT-TCCAGTATCGATTTTCTGA 59
Query 39438 TTCGTTTGGTGGTAACCCACCATTATATTCGTGCGGTCTTAGTGCGCTGTAATATCCAAC 39497
||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||
Sbjct 60 TTCGTTTGGTGGTAATCCACCGTTATATTCGTGCGGCCTGAGTGCGCTGTAATATCCAAC 119
Query 39498 GATATAGTCCGTTATTGCGTGAGCTGCATCGCTGAAGCTTACATAGCCCGTCGCCGGCAC 39557
||| ||||||||||| ||||||| ||||||||||||||||| || || ||| | || ||
Sbjct 120 GATGTAGTCCGTTATGGCGTGAGTCGCATCGCTGAAGCTTACGTAACCTGTCACTGGTAC 179
Query 39558 CCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCAGTTTCC 39617
|||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||
Sbjct 180 CCATTCGTTCTTCAGACTCCGGAAGAAGCGTTCCATTGGGCTATTATCCCAGCAGTTTCC 239
Query 39618 ACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAACTGCCTGCT 39677
|||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||
Sbjct 240 ACGCCGACTCATACTCTGTTTGATCCGGTATCGCCACAGCAACTGCCGGAACTGCCTGCT 299
Query 39678 CGTATAATGACTGCCTTGATCGCTGTGGAACATCACCCCGACGGGCTTACCACGGGTTTC 39737
||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 300 CGTATAATGACTGCCCTGATCACTGTGGAACATCACTCCGACGGGCTTACCACGCGTTTC 359
Query 39738 CCATGCCATTTCCAGTGCTTTCATGGTAAGCCTGCTGTCCGGCGAGAACGACATGGCCCA 39797
||||||||||||||| || |||||||| || ||||||||||| ||||||||||| |||||
Sbjct 360 CCATGCCATTTCCAGCGCCTTCATGGTGAGTCTGCTGTCCGGTGAGAACGACATTGCCCA 419
Query 39798 GCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCAGCGCTTACC 39857
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 420 GCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCCAGGTACGCCCAGCGCTTACC 479
Query 39858 CGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCACGGCGAACTG 39917
||||||||||||||||||||| |||||||||||||| |||||||| | |||||||||||
Sbjct 480 CGTCCAGATATAGGTCACATCGCCGCACCACACCTGGTTTGGCTCTCTTACGGCGAACTG 539
Query 39918 CCGTTCAAGGTAGTTAGGGATAGCAACATGTTCATGACCACCACGTTTATACCGGTAAGT 39977
||| ||||||| |||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 540 CCGCTCAAGGTGATTAGGGATAGCAACATGTTCATGACCACCACGCTTATACCGGTGAGT 599
Query 39978 CGGCTGCTGACAGCTGACCAGCCCCAGCTCTTTCATGAGTCTGCCAGCAAGCCAGCGCCC 40037
|| ||||| || ||||||||||| ||||||||||| || |||||||| |||||||||||
Sbjct 600 TGGTTGCTGGCAACTGACCAGCCCAAGCTCTTTCATTAGCCTGCCAGCGAGCCAGCGCCC 659
Query 40038 CATCTGGTAGCCTCTCTGGGTTGCCATTGTGGCGATGCTTCTTGCTCCGGCAGAGCCGTG 40097
|||||| | ||||||||| ||||||||||| |||||||| ||||||||||| || |||||
Sbjct 660 CATCTGATGGCCTCTCTGAGTTGCCATTGTCGCGATGCTCCTTGCTCCGGCCGAACCGTG 719
Query 40098 GCTGATGCCATGCAGTTCAAGTACCTGGCTGCGTAATACAGCCCGTCTGCCGTCTGGCTT 40157
||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 720 GCTGATGTTGTGCAGCTCAAGTACCTGGCTTCGTAATACAGCCCGTCTGCCGTCTGGCTT 779
Query 40158 TTCAGGACGGTTTTTCCAGTATTTGTAGCTGCTGCGATGGACCCCGAACACATGGCAGAG 40217
||||||||| ||||||||||||||||| || |||||||| ||||||||||| ||||||||
Sbjct 780 TTCAGGACGATTTTTCCAGTATTTGTAACTACTGCGATGAACCCCGAACACGTGGCAGAG 839
Query 40218 AGTGGCCACAGGATAACGCGCCCTGAGTTTCCCGATTATCGAGAACTGTTCAGGGAGTCT 40277
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 840 AGTGGCCACAGGATAACGCGCCCTGAGCTTCCCGATTATCGAGAACTGTTCAGGGAGTCT 899
Query 40278 GACATCAAGAGCGCGGTAGCCTTTTTTAATATTTCATTTTCCATTTCAATACGTTGTAGC 40337
||||||||||||||||||||||||||||| || || |||||||||||||||||||| |||
Sbjct 900 GACATCAAGAGCGCGGTAGCCTTTTTTAAAATATCGTTTTCCATTTCAATACGTTGCAGC 959
Query 40338 TTTTTCCTGAGCTCACGGATTTCAATTTGTTCCGGGGTAATGGGGGAGGCTTTTGGTGTT 40397
||||| || ||||| || ||||| ||||| |||||||| || || || | |||||| |||
Sbjct 960 TTTTTTCTCAGCTCGCGTATTTCGATTTGCTCCGGGGTTATCGGAGAAGATTTTGGCGTT 1019
Query 40398 TTGCCCTGCCGCTCATCACGTAATTGTTTCACCCATCGCGTCATTGTGGAAAGGCCGACA 40457
|||||||| ||||||||||| | |||||| |||||| ||||| || |||||||| |||
Sbjct 1020 TTGCCCTGACGCTCATCACGCAGTTGTTTGACCCATTTTGTCATCGTAGAAAGGCCAACA 1079
Query 40458 TCCATAGCGCTGGCTGCATCTGCCACGGTGTAATTCTGGTCAACGACCAGTTGAGCGGAT 40517
||||| || | ||||| | ||| || |||||| | ||||| || ||||| |||||||||
Sbjct 1080 TCCATGGCCTTCGCTGCTTGTGCAACTGTGTAAGTTTGGTCGACAACCAGCTGAGCGGAT 1139
Query 40518 TCGCGTTTAAACTCTGCGCTGAAATTTCtttttttCATTATGGCACCTGTGTTGTTCTGA 40577
|||||||| || || | || ||||||||| ||||||| ||||||||||||||||||
Sbjct 1140 TCGCGTTTGAATTCAGGACTAAAATTTCTTCGTTTCATTGGAGCACCTGTGTTGTTCTGA 1199
Query 40578 GGTGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTAAACCACTTCACT 40629
| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GATGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTAAACCACTTCACT 1251
Score = 1701 bits (1886), Expect = 0.0
Identities = 1130/1253 (90%), Gaps = 1/1253 (0%)
Strand=Plus/Plus
Query 16753 TGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTTCCAGTATCGATTTTCCGA 16812
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||
Sbjct 1 TGAAGTGGTCAACAAAAACTGGCCACCGCGTTAGAGTTTT-TCCAGTATCGATTTTCTGA 59
Query 16813 TTCGTTTGGTGGTAACCCACCATTATATTCGTGCGGTCTTAGTGCGCTGTAATATCCAAC 16872
||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||
Sbjct 60 TTCGTTTGGTGGTAATCCACCGTTATATTCGTGCGGCCTGAGTGCGCTGTAATATCCAAC 119
Query 16873 GATATAGTCCGTTATTGCGTGAGCTGCATCGCTGAAGCTTACATAGCCCGTCGCCGGCAC 16932
||| ||||||||||| ||||||| ||||||||||||||||| || || ||| | || ||
Sbjct 120 GATGTAGTCCGTTATGGCGTGAGTCGCATCGCTGAAGCTTACGTAACCTGTCACTGGTAC 179
Query 16933 CCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCAGTTTCC 16992
|||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||
Sbjct 180 CCATTCGTTCTTCAGACTCCGGAAGAAGCGTTCCATTGGGCTATTATCCCAGCAGTTTCC 239
Query 16993 ACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAACTGCCTGCT 17052
|||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||
Sbjct 240 ACGCCGACTCATACTCTGTTTGATCCGGTATCGCCACAGCAACTGCCGGAACTGCCTGCT 299
Query 17053 CGTATAATGACTGCCTTGATCGCTGTGGAACATCACCCCGACGGGCTTACCACGGGTTTC 17112
||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 300 CGTATAATGACTGCCCTGATCACTGTGGAACATCACTCCGACGGGCTTACCACGCGTTTC 359
Query 17113 CCATGCCATTTCCAGTGCTTTCATGGTAAGCCTGCTGTCCGGCGAGAACGACATGGCCCA 17172
||||||||||||||| || |||||||| || ||||||||||| ||||||||||| |||||
Sbjct 360 CCATGCCATTTCCAGCGCCTTCATGGTGAGTCTGCTGTCCGGTGAGAACGACATTGCCCA 419
Query 17173 GCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCAGCGCTTACC 17232
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 420 GCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCCAGGTACGCCCAGCGCTTACC 479
Query 17233 CGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCACGGCGAACTG 17292
||||||||||||||||||||| |||||||||||||| |||||||| | |||||||||||
Sbjct 480 CGTCCAGATATAGGTCACATCGCCGCACCACACCTGGTTTGGCTCTCTTACGGCGAACTG 539
Query 17293 CCGTTCAAGGTAGTTAGGGATAGCAACATGTTCATGACCACCACGTTTATACCGGTAAGT 17352
||| ||||||| |||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 540 CCGCTCAAGGTGATTAGGGATAGCAACATGTTCATGACCACCACGCTTATACCGGTGAGT 599
Query 17353 CGGCTGCTGACAGCTGACCAGCCCCAGCTCTTTCATGAGTCTGCCAGCAAGCCAGCGCCC 17412
|| ||||| || ||||||||||| ||||||||||| || |||||||| |||||||||||
Sbjct 600 TGGTTGCTGGCAACTGACCAGCCCAAGCTCTTTCATTAGCCTGCCAGCGAGCCAGCGCCC 659
Query 17413 CATCTGGTAGCCTCTCTGGGTTGCCATTGTGGCGATGCTTCTTGCTCCGGCAGAGCCGTG 17472
|||||| | ||||||||| ||||||||||| |||||||| ||||||||||| || |||||
Sbjct 660 CATCTGATGGCCTCTCTGAGTTGCCATTGTCGCGATGCTCCTTGCTCCGGCCGAACCGTG 719
Query 17473 GCTGATGCCATGCAGTTCAAGTACCTGGCTGCGTAATACAGCCCGTCTGCCGTCTGGCTT 17532
||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 720 GCTGATGTTGTGCAGCTCAAGTACCTGGCTTCGTAATACAGCCCGTCTGCCGTCTGGCTT 779
Query 17533 TTCAGGACGGTTTTTCCAGTATTTGTAGCTGCTGCGATGGACCCCGAACACATGGCAGAG 17592
||||||||| ||||||||||||||||| || |||||||| ||||||||||| ||||||||
Sbjct 780 TTCAGGACGATTTTTCCAGTATTTGTAACTACTGCGATGAACCCCGAACACGTGGCAGAG 839
Query 17593 AGTGGCCACAGGATAACGCGCCCTGAGTTTCCCGATTATCGAGAACTGTTCAGGGAGTCT 17652
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 840 AGTGGCCACAGGATAACGCGCCCTGAGCTTCCCGATTATCGAGAACTGTTCAGGGAGTCT 899
Query 17653 GACATCAAGAGCGCGGTAGCCTTTTTTAATATTTCATTTTCCATTTCAATACGTTGTAGC 17712
||||||||||||||||||||||||||||| || || |||||||||||||||||||| |||
Sbjct 900 GACATCAAGAGCGCGGTAGCCTTTTTTAAAATATCGTTTTCCATTTCAATACGTTGCAGC 959
Query 17713 TTTTTCCTGAGCTCACGGATTTCAATTTGTTCCGGGGTAATGGGGGAGGCTTTTGGTGTT 17772
||||| || ||||| || ||||| ||||| |||||||| || || || | |||||| |||
Sbjct 960 TTTTTTCTCAGCTCGCGTATTTCGATTTGCTCCGGGGTTATCGGAGAAGATTTTGGCGTT 1019
Query 17773 TTGCCCTGCCGCTCATCACGTAATTGTTTCACCCATCGCGTCATTGTGGAAAGGCCGACA 17832
|||||||| ||||||||||| | |||||| |||||| ||||| || |||||||| |||
Sbjct 1020 TTGCCCTGACGCTCATCACGCAGTTGTTTGACCCATTTTGTCATCGTAGAAAGGCCAACA 1079
Query 17833 TCCATAGCGCTGGCTGCATCTGCCACGGTGTAATTCTGGTCAACGACCAGTTGAGCGGAT 17892
||||| || | ||||| | ||| || |||||| | ||||| || ||||| |||||||||
Sbjct 1080 TCCATGGCCTTCGCTGCTTGTGCAACTGTGTAAGTTTGGTCGACAACCAGCTGAGCGGAT 1139
Query 17893 TCGCGTTTAAACTCTGCGCTGAAATTTCtttttttCATTATGGCACCTGTGTTGTTCTGA 17952
|||||||| || || | || ||||||||| ||||||| ||||||||||||||||||
Sbjct 1140 TCGCGTTTGAATTCAGGACTAAAATTTCTTCGTTTCATTGGAGCACCTGTGTTGTTCTGA 1199
Query 17953 GGTGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTAAACCACTTCAATT 18005
| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1200 GATGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTAAACCACTTCACTT 1252
>seq4723
Length=43540
Score = 655 bits (726), Expect = 0.0
Identities = 655/848 (77%), Gaps = 1/848 (0%)
Strand=Plus/Minus
Query 36807 GCATGAATTTGGAAAATGTAGTGAAGTTTCACTTCGCAAAATCTACTCAGATAAACGATA 36866
|||||||| | ||||| | |||| || ||||| || || || || ||| | |||
Sbjct 34330 GCATGAATCTCGAAAACACACTGAAATTCCACTTTGCGAAGTCAACGATGATTAGCGACT 34271
Query 36867 TCCCTCGCGCAACAGCTTCAGAAGCGTTAACTGGCACTGATGTTATGGCAGCTATGGGTA 36926
|| ||||| || || ||||| | || || || ||||| | ||||| || || || |
Sbjct 34270 CTCCGCGCGCCACGGCGTCAGACTCTTTGACCGGAACTGACATCATGGCGGCGATTGGCA 34211
Query 36927 TGACTCAAAGTCGCGCATCGTTAGGTTACAGCGCGTTTCTTGGGAAGATGGAAATCAGCA 36986
|||| |||| ||||| | | || | || || || || || |||||||| ||||||
Sbjct 34210 TGACACAAACACGCGCCGCTCTCGGGTTTAGTGCTTTCCTCGGCAAGATGGATATCAGCG 34151
Query 36987 GCAATGACCGTGAGAAAGCTATTGAACTGCTGACCCAATATGCACTTGAGCACTGCGATA 37046
| |||||||||| || || | ||| | || ||| ||||| | ||||| ||||| |
Sbjct 34150 ACTATGACCGTGACCGGGCGATCGGACTTTTAACTCAACATGCAATGGAGCAGTGCGACA 34091
Query 37047 AGGTTTCCGCCTTACGTAAGCTCGAAAACGATATTAAACCAAAGGTAATGCAAGTGCTCG 37106
||||| | |||||||| |||||||| | |||||||| | || || |||||||||||||
Sbjct 34090 AGGTTGCAGCCTTACGCAAGCTCGAGACAGATATTAAGCTTAAAGTGATGCAAGTGCTCG 34031
Query 37107 CAACATTCGCATTTGCTGATTACTCACGTAGCGCTGCCAGTACGCGAACCTGTGACTGCT 37166
|||| |||||||||||||| ||| |||| ||||| ||||| || ||| || |||||||
Sbjct 34030 CAACGTTCGCATTTGCTGACTACGCACGCAGCGCCGCCAGCACCAGAATGTGCGACTGCT 33971
Query 37167 GTGGTGGCAAGAAGTTTATCGATGCTGAAGTCATGACGATGAAAAGCATCGGAAAACCAT 37226
| || || || || |||| || | || ||||||||||| ||||| | |||
Sbjct 33970 GCCAGGGAAATAAATTCGTCGAAGCGAAGGTGATGACGATGAAGCATATCGGCAGACCTA 33911
Query 37227 ATCTGGAAGAGCGTAAAGAGACGGTTAAAGTTCTGTGCCGCAAATGCAAAGGGAAGGGGG 37286
| ||||| || | || |||||||| || || |||| |||||| |||||||||||||
Sbjct 33910 ACCTGGAGGAAAGGCGGGAAACGGTTAAGGTGCTTTGCCACAAATGTAAAGGGAAGGGGG 33851
Query 37287 TGCTTACCAACGCTTGCCAATGCAATGGCAAAGGCGTAGTGGTAGACAAAGAGAAAACTA 37346
|||| ||||| || || || |||||||| || ||||| ||| | ||||||||||||||||
Sbjct 33850 TGCTGACCAATGCCTGTCAGTGCAATGGGAAGGGCGTGGTGCTGGACAAAGAGAAAACTA 33791
Query 37347 TTCTACAAGGTGGCGTTCCTGCGTATAAAACCTGCGGACGCTGTAATGGGCGTGGATATG 37406
|||||||||| ||||| || || |||||||| ||| | || || ||||||||||||||||
Sbjct 33790 TTCTACAAGGCGGCGTGCCAGCATATAAAACGTGCAGCCGGTGCAATGGGCGTGGATATG 33731
Query 37407 CTCGTCTGCTGCCTGATAGCGTTCGAAAATACATCTGCGCAACGGTGATTGATGTTCCTG 37466
| | |||| || |||||||| || ||||| |||||||| |||||||| ||| ||||||
Sbjct 33730 CCAGATTGCTACCGGATAGCGTCCGTAAATATATCTGCGCGACGGTGATGGATATTCCTG 33671
Query 37467 AAACCACATGGCGCAGGTATTACAAGGACTTCTTCGAAAGCTTGGTAGGTGAGTGCATTA 37526
||||||| |||||||||| ||||||||| |||||||||||| ||||||||||||||||||
Sbjct 33670 AAACCACGTGGCGCAGGTCTTACAAGGATTTCTTCGAAAGCCTGGTAGGTGAGTGCATTA 33611
Query 37527 AGCAGGAGGAATATGCAAATCAGATGTTGAGTAAAGTCACACAGTGATAAATATTTTCTA 37586
| ||||||||||| ||||| | |||||||| ||||||||||||| ||| |||||||||
Sbjct 33610 AACAGGAGGAATACGCAAACCGGATGTTGAACAAAGTCACACAGTAGTAAGTATTTTCTA 33551
Query 37587 CTAAAAAGACGTTCTGTAG-AATGTGCTCTTTACAAAGTGGCGATTTTTGTTTAATATCA 37645
||| || || | ||| || | | |||||||||||||||||||||||||||| ||
Sbjct 33550 TGAAATAGGATTTATCTAGAAAATTACACTTTACAAAGTGGCGATTTTTGTTTAATCTCG 33491
Query 37646 TTTCTAAC 37653
||||||
Sbjct 33490 ACTCTAAC 33483
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 132064848847400
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