Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_029066.1 Length=48666 Score E Sequences producing significant alignments: (Bits) Value seq4723 87.8 6e-13 >seq4723 Length=43540 Score = 87.8 bits (96), Expect = 6e-13 Identities = 162/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 2117 TGACAGGGAAAGCCGCCAGATACGATGTCAACGCGTCCTCGCCACGGCCTTCCGTCAAAT 2176 || || |||||||||||||| |||| ||||| ||||||||||||| |||||||||| Sbjct 3759 TGGCACGGAAAGCCGCCAGAAACGACATCAACAATTCCTCGCCACGGCTTTCCGTCAAAA 3700 Query 2177 GTTCTGATGTCGTCCCAGATCGGGAAGCGTGAAAGGCACCCGTCTTTTTGCCGCTGGGCA 2236 | | | ||| ||| |||||||| || || || || ||||| || || || Sbjct 3699 CTGCACACGTCAGACCAAATCGGGAAAGGTCGGAGAATTCCATCGTTTTGTCGTTGCGCG 3640 Query 2237 AGAACTCG-GCGGCTGTGCTCTCGCCACTCAACGGCGCATATCGTCCTGATTCCAAGCAG 2295 |||||| | || || || | || ||||| ||||| | | || ||||| || Sbjct 3639 AGAACTTGTGCTGC-GTAGGCATCACATTCAACTGCGCAAACTGGCCGCCAGCCAAGGAG 3581 Query 2296 GTGAGAGGCGAGAATTCCTCCTCCGTCTCCGGCAAACAATGCCAGCTCATTCATG 2350 ||| |||| |||||||| || | || || || | |||| |||||||||| Sbjct 3580 GTGTCCTCCGAGTATTCCTCCGCCAGCGCCTGCGAAAAGAGCCAACTCATTCATG 3526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155497565853544