Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_029120.1 Length=60875 Score E Sequences producing significant alignments: (Bits) Value seq4723 562 1e-155 seq9686 291 3e-74 >seq4723 Length=43540 Score = 562 bits (622), Expect = 1e-155 Identities = 618/826 (75%), Gaps = 15/826 (2%) Strand=Plus/Minus Query 1782 CCATTGCTCCCCAAATACAAAACTAATTTCAGCCAGTGCTTCGTCCATTTTTTCGATGAA 1841 |||||| |||||| || || | |||||||| || || || ||||| || |||||||| Sbjct 2279 CCATTGTTCCCCATATGTGAAGCCGATTTCAGCAAGCGCCTCATCCATCTTCTCGATGAA 2220 Query 1842 CTCCGGCACCATCTCGTCAAAACCAGCCATGTATTTTTCATCCCGCTCGACCACGACATA 1901 ||||||||||||||||||||| ||||||||||||| || || || ||||||| ||||| Sbjct 2219 TTCCGGCACCATCTCGTCAAAATCAGCCATGTATTTGTCGTCACGTTCGACCAAGACATG 2160 Query 1902 ATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCGAAGTACCAGGCATCTTTTCG 1961 || | |||||| || |||||||| ||||| || ||||| ||| ||||||| | |||| Sbjct 2159 GTGGATGCCTTCGCGTTTCATGCGTGGGTCGTAATTGGCAAAGAACCAGGCGTTCTTTCC 2100 Query 1962 AGTCACCCACATGCTGAATTGCACCTGGGCCATGTAAGCTGATTTTATGGCCTCGAAACC 2021 || | |||||||||| | || |||||||||||||| || || || |||||||| || || Sbjct 2099 GGTAATCCACATGCTGTACTGAACCTGGGCCATGTACGCGGACTTGATGGCCTCAAAGCC 2040 Query 2022 ACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGACATTTCAGCTCAAGGCCGTT 2081 || |||| |||||||||||| || |||||||| || || || ||||| || ||||| Sbjct 2039 GCCAAGCCTGAATTTCATGAAGTCGCGGGAGGTGAAAGGGCACTTCAGTTCGAGGCCAAA 1980 Query 2082 GCCGTCACTGCATAATCCATCCGGAGAGCAGGCGGTACGCATACTTTCGTCGCGATAGAT 2141 | ||| |||||| | || || ||||||||||| || |||||| | |||||||| ||| Sbjct 1979 GTCGTTACTGCACAGCCCGTCAGGAGAGCAGGCCGTGCGCATATTCTCGTCGCGGAAGAG 1920 Query 2142 GATCGGGGATTCAGTAATATTCACGCCGGAAGTAAACTCAAACAGGGCTCTGGCGTCGTT 2201 |||||| || || | | | ||||||| || ||||| || |||| || ||||| | Sbjct 1919 GATCGGCGACTCTATGACGGTAACGCCGGTCGTGAACTCGAAAAGGGTTCGCGCGTCTTC 1860 Query 2202 CTCGTACTGTTTTCCCCATGCCAGGGCTTTGGCGTTAACTTCCGGGGCCACACCCGTGCA 2261 ||| | ||||| ||||||||||| | ||||||||||||||||| | || || ||||| Sbjct 1859 TTCGAATTGTTTACCCCATGCCAGCGACTTGGCGTTAACTTCCGGCGATACGCCGGTGCA 1800 Query 2262 GACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCATTTCTTTCCGGA 2321 ||| || |||||||||||||||||||| |||||||||||||| | ||| ||||| ||||| Sbjct 1799 GACTTCCGCCAGCAGGGTGTGGAAGTAAGACATTTTCATGTCCGTCCACTTCTTCCCGGA 1740 Query 2322 GCGGGGTTTGGCTATCACGTTGTGAACTTCTGAAGCTGTGATGACCCCGAGCCGTAATTT 2381 ||| ||||||| || |||||| ||||| || || || || || ||||| || | | Sbjct 1739 GCGAGGTTTGGAAATTACGTTGCTGACTTCAGATGCCGTAATTACGCCGAGGCGCAGCCT 1680 Query 2382 TTGCCATGCATAATCTCCCTGCTCGACACCTCTCACGTCGATCCCGGTACGTTGTAGGAT 2441 |||||| || | ||| || |||||||| | | ||||| || || || || ||||| Sbjct 1679 TTGCCACGCTTCATCGCCTTGCTCGACCGTTGTTACGTCAATGCCCGTCCGGGCCAGGAT 1620 Query 2442 AATTTCTGGTGTCATGCTGCCACCTTCTGCTCCGTGGCTTTCTGTTTCAGGAATCCAAGA 2501 |||||| ||||||||||||| ||| ||||| || ||||| || ||| Sbjct 1619 AATTTCAGGTGTCATGCTGC---------------GGCCTTCTGCTTAAGGAACCCGAGA 1575 Query 2502 ACCTTCTCTGCTTCGGCCTGGGACAGTTCTGACGACGCCCGAATGTAGCGGCGAAATATC 2561 | || | |||||| |||| || || || | ||||| ||| || || || Sbjct 1574 GCTTTGACGGCTTCGATTTGGGTCAACTCGCCTGAGTCTTGAATGGTGCGACGGAAGATT 1515 Query 2562 TGAGAACAGAGCGGCAAGAGGTCGTCATCCCACGTTTTTTCCATGG 2607 | || |||||||| | ||||| ||||||| || || | ||||| Sbjct 1514 TTTGAGCAGAGCGGTAGCAGGTCTGCATCCCAGGTCTTATTCATGG 1469 Score = 286 bits (316), Expect = 1e-72 Identities = 354/486 (73%), Gaps = 9/486 (2%) Strand=Plus/Minus Query 8491 CTAAAGCAGAACTGAATACCAGAAAACTTTTCCGATAATCTCCACGCTTTGAGTATCTGC 8550 ||| ||||| || || ||||| ||||| || |||| ||| || ||| || Sbjct 40542 CTACAGCAGGACCGAGTACCAAAAAACGCGGCCAATAACCTCGAC---------ATCCGC 40492 Query 8551 TTCTTCGTCAGGGTACTCTTCACTGTTATAACTGCGTATGATTAGTTTTCCACCGGGGCG 8610 || | | | | | ||||| | |||| | |||||||| | || |||| ||||| Sbjct 40491 CTCGTTGGCTGTCTCATCTTCTCGGTTAAAGCTGCGTATAGTCAGCATTCCTCCGGGATT 40432 Query 8611 TCTGTACAATAGCTTTATACGCTTCAGTTTTTCATCACCGACACCAGGCTGTGCGATGGC 8670 | || | ||||||| ||||| || || || |||||| | || || || ||||| || Sbjct 40431 ACGATATAGCTGCTTTATGCGCTTAAGCTTATCGTCACCGCCGCCCGGTTGGGCGATCGC 40372 Query 8671 GTAGAGTTTGCTGTCAACAATACGTTTGTTGTTTGTGTCTACTGCGATTGTTGTTCCATC 8730 || || || | ||||| || |||||||| || |||||||| || | || ||||| || Sbjct 40371 ATAAAGCTTCCCATCAACTATTCGTTTGTTATTCGTGTCTACCGCAACGGTGGTTCCGTC 40312 Query 8731 TGGTATCACGGGTTCCATGCTATCACCAGTAGCCGGAAAACAAAGCACACCAGAACCATC 8790 |||||||| ||||||||||||||||| ||||| || ||||| || || ||||||||||| Sbjct 40311 AGGTATCACCGGTTCCATGCTATCACCGGTAGCGGGGAAACAGAGGACTCCAGAACCATC 40252 Query 8791 ACTGTTAGCTCCGACACGGCGCAAGGTTGCTTTTGAGAAGCGTAATTTAAAACCATTATG 8850 ||| || || ||||| || |||| ||| || |||||||| | |||||||| || || || Sbjct 40251 ACTATTTGCACCGACGCGTCGCAGGGTAGCCTTTGAGAACCTCAATTTAAATCCGTTGTG 40192 Query 8851 ATCTTCGCAATGAACTCTTCCGTCACCGCATGCAAACTCAATGTCTTTCAGATATGGCAC 8910 |||||||| ||| || | || || ||||| |||||||| || || || || | ||||| Sbjct 40191 ATCTTCGCTATGGACACGGCCATCCCCGCACGCAAACTCGATATCCTTAAGGAACGGCAC 40132 Query 8911 CTCAACTTCATCATCTCGTAGTGGTGTATTTCTGTCCCAAGTTTCAAGGGAACCCCATTC 8970 || || ||||||||| |||| || || || | ||||| | |||| | |||||||| Sbjct 40131 TTCGACCTCATCATCTGGTAGGGGCGTGTTCTTATCCCATGCGTCAACAGTCCCCCATTC 40072 Query 8971 TGATTC 8976 |||||| Sbjct 40071 TGATTC 40066 >seq9686 Length=37809 Score = 291 bits (322), Expect = 3e-74 Identities = 280/359 (78%), Gaps = 0/359 (0%) Strand=Plus/Plus Query 19234 ATGCGTGATATCCGGCAGGTTCTTGAGCGCTGGGGTGCATGGGCGGCAAATAACTATGAG 19293 ||||| || |||| ||||| | || |||||||| || ||||| || ||||| |||| Sbjct 159 ATGCGAGACATCCAACAGGTATTAGAACGCTGGGGAGCGTGGGCAGCCAATAATCATGAA 218 Query 19294 GATGTTACATGGTCGCCCATTGCTGCAGGATTTAAGGGACTGATCCCCGAAAAAGTAAAA 19353 |||||| | ||| |||| ||||| || |||||||| ||||| | || | | |||||| Sbjct 219 GATGTTGCCTGGGCGCCGATTGCCGCTGGATTTAAAGGACTCCTTCCGGCCAGGGTAAAA 278 Query 19354 TCACGTCCACAGTGTTGTGACGATGACGCGATGATTATATGCGGGTGTATGGCTCGCCTT 19413 || || |||||||||||||| ||||| |||||| | | |||||||| || || | || Sbjct 279 TCGCGGCCACAGTGTTGTGATGATGATGCGATGGTCGTCTGCGGGTGCATCGCCAGGCTG 338 Query 19414 AACAGGAACAACAGCGATCTGCATGACTTGCTGGTTGATTATTACGTGTTGGGGGAGACA 19473 |||| ||||| ||||| |||| || ||||||| |||||||||||| ||||| ||| Sbjct 339 AACAAAAACAATCGCGATTTGCACGATCTGCTGGTGGATTATTACGTGATGGGGATGACG 398 Query 19474 TTCATGGCGCTGGCACGTAAGCATGGATGCTCTGATGGAACTATCGGTAAAAAATTACAG 19533 || ||||||||||| || |||||||| ||||| ||||| |||||||||||| ||||| Sbjct 399 TTTATGGCGCTGGCTCGAAAGCATGGTTGCTCAGATGGCCATATCGGTAAAAAGTTACAA 458 Query 19534 AAAGCGGAGGGTGTGGTTGAAGGGATGTTAATGTTACTTGGTGTCAGACTGGAAATGGA 19592 ||||| ||||| || |||||||| ||| | ||| | || | |||| ||||||| ||||| Sbjct 459 AAAGCCGAGGGAGTTGTTGAAGGCATGCTGATGATGCTCGATGTCCGACTGGAGATGGA 517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194538237514026