Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq5375 109 5e-19
>seq5375
Length=21980
Score = 109 bits (120), Expect = 5e-19
Identities = 228/337 (68%), Gaps = 2/337 (1%)
Strand=Plus/Plus
Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675
||| || || ||||| || || |||| || ||||| || || ||||| |||||||||||
Sbjct 1132 GACGTGGGCCATCATATATGTTAGCAAGGCATAACTGGCGATATTGAAAGGCACCCCTAA 1191
Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735
||||| || | || || ||||| | ||||| || ||||| || || || || || ||
Sbjct 1192 GCCCATATCAGCTGAACGCTGATACATTTGGCATGAAAGCTCGCCGTTGGCCACATAAAA 1251
Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGC 6795
|| ||| |||||| || || || ||||| | || | | |||||||| ||
Sbjct 1252 CTGCGCTAGGCAGTGGCAAGGAGGAAGTGCCATTTGGGGTAAGGCGCAAGGGTTCCAGGC 1311
Query 6796 GCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAG 6855
|| | || || | | ||||| ||||| || | ||||| || | || | |||
Sbjct 1312 GCTTAAAACCATGCGGCGATCATCTGGGTTGGTTTTGATGGTGTGGAGAATGTGTTCCAG 1371
Query 6856 CTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGA-TACTCCGCCCCAAAGT 6914
|| ||| | || ||| ||| || || | || || || || || || || |
Sbjct 1372 TTGATCCACACCTTGTTGGCTATAATCTGCAT-GCATGTTGGAGTATTCGGCGCCGAAAT 1430
Query 6915 GTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCC 6951
| | ||||||||| |||||||| || |||||||||||
Sbjct 1431 GACGCCACTGGAAGCCGTAGACGGGACCCAAGTCGCC 1467
Score = 109 bits (120), Expect = 5e-19
Identities = 228/337 (68%), Gaps = 2/337 (1%)
Strand=Plus/Minus
Query 34394 GGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA-TCGGGG 34452
||||||||||| || |||||||| ||||||||| | || || || || || || ||
Sbjct 1467 GGCGACTTGGGTCCCGTCTACGGCTTCCAGTGGCGTCATTTCGGCGCCGAATACTCCAAC 1408
Query 34453 GAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTT 34512
|| | || || ||| ||| || | ||| || ||| | || | || ||||| |
Sbjct 1407 ATGC-ATGCAGATTATAGCCAACAAGGTGTGGATCAACTGGAACACATTCTCCACACCAT 1349
Query 34513 GAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCC 34572
|| ||||| ||||| | | || || | |||| |||||||| | | ||
Sbjct 1348 CAAAACCAACCCAGATGATCGCCGCATGGTTTTAAGCGCCTGGAACCCTTGCGCCTTACC 1289
Query 34573 TCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCT 34632
| ||||| || || || |||||| ||| || || || || || || || |||||
Sbjct 1288 CCAAATGGCACTTCCTCCTTGCCACTGCCTAGCGCAGTTTTATGTGGCCAACGGCGAGCT 1229
Query 34633 GTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGC 34692
|| ||||| | ||||| || || | || ||||| ||||||||||| ||||| || ||
Sbjct 1228 TTCATGCCAAATGTATCAGCGTTCAGCTGATATGGGCTTAGGGGTGCCTTTCAATATCGC 1169
Query 34693 TAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729
||||| || |||| || || ||||| || || |||
Sbjct 1168 CAGTTATGCCTTGCTAACATATATGATGGCCCACGTC 1132
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447922678736880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |