Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq5375 109 5e-19 >seq5375 Length=21980 Score = 109 bits (120), Expect = 5e-19 Identities = 228/337 (68%), Gaps = 2/337 (1%) Strand=Plus/Plus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 ||| || || ||||| || || |||| || ||||| || || ||||| ||||||||||| Sbjct 1132 GACGTGGGCCATCATATATGTTAGCAAGGCATAACTGGCGATATTGAAAGGCACCCCTAA 1191 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 ||||| || | || || ||||| | ||||| || ||||| || || || || || || Sbjct 1192 GCCCATATCAGCTGAACGCTGATACATTTGGCATGAAAGCTCGCCGTTGGCCACATAAAA 1251 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGC 6795 || ||| |||||| || || || ||||| | || | | |||||||| || Sbjct 1252 CTGCGCTAGGCAGTGGCAAGGAGGAAGTGCCATTTGGGGTAAGGCGCAAGGGTTCCAGGC 1311 Query 6796 GCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAG 6855 || | || || | | ||||| ||||| || | ||||| || | || | ||| Sbjct 1312 GCTTAAAACCATGCGGCGATCATCTGGGTTGGTTTTGATGGTGTGGAGAATGTGTTCCAG 1371 Query 6856 CTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGA-TACTCCGCCCCAAAGT 6914 || ||| | || ||| ||| || || | || || || || || || || | Sbjct 1372 TTGATCCACACCTTGTTGGCTATAATCTGCAT-GCATGTTGGAGTATTCGGCGCCGAAAT 1430 Query 6915 GTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCC 6951 | | ||||||||| |||||||| || ||||||||||| Sbjct 1431 GACGCCACTGGAAGCCGTAGACGGGACCCAAGTCGCC 1467 Score = 109 bits (120), Expect = 5e-19 Identities = 228/337 (68%), Gaps = 2/337 (1%) Strand=Plus/Minus Query 34394 GGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA-TCGGGG 34452 ||||||||||| || |||||||| ||||||||| | || || || || || || || Sbjct 1467 GGCGACTTGGGTCCCGTCTACGGCTTCCAGTGGCGTCATTTCGGCGCCGAATACTCCAAC 1408 Query 34453 GAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTT 34512 || | || || ||| ||| || | ||| || ||| | || | || ||||| | Sbjct 1407 ATGC-ATGCAGATTATAGCCAACAAGGTGTGGATCAACTGGAACACATTCTCCACACCAT 1349 Query 34513 GAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCC 34572 || ||||| ||||| | | || || | |||| |||||||| | | || Sbjct 1348 CAAAACCAACCCAGATGATCGCCGCATGGTTTTAAGCGCCTGGAACCCTTGCGCCTTACC 1289 Query 34573 TCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCT 34632 | ||||| || || || |||||| ||| || || || || || || || ||||| Sbjct 1288 CCAAATGGCACTTCCTCCTTGCCACTGCCTAGCGCAGTTTTATGTGGCCAACGGCGAGCT 1229 Query 34633 GTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGC 34692 || ||||| | ||||| || || | || ||||| ||||||||||| ||||| || || Sbjct 1228 TTCATGCCAAATGTATCAGCGTTCAGCTGATATGGGCTTAGGGGTGCCTTTCAATATCGC 1169 Query 34693 TAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 ||||| || |||| || || ||||| || || ||| Sbjct 1168 CAGTTATGCCTTGCTAACATATATGATGGCCCACGTC 1132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447922678736880