Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq6222 170 4e-37 seq3468 140 8e-28 seq957 93.3 1e-13 >seq6222 Length=12937 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||| ||||| ||||||||||| || ||||| | | ||| | || ||| Sbjct 4437 AGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGACAAGGTACGACCGTCT 4496 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||| |||||||| |||||||| || |||||||||||||| |||| ||||| ||||| Sbjct 4497 TCCAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGGAATGCCTTCTTTGTCT 4556 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||| |||||||| ||||||||||| ||||| || | |||||| || Sbjct 4557 TGGATCTTGGCTTTGACGTTTTCAATGGTGTCAGACGGCTCAACTTCCAAAGTGATGGTT 4616 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | |||||| || || | ||||| Sbjct 4617 TTGCCGGTCAAAGTCTTCACGAAGATTTGCAT 4648 Score = 159 bits (176), Expect = 8e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210902 TAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATC 210961 ||| || | |||||| ||||| ||||||||||| || ||||| | | ||| | || || Sbjct 4208 TAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGATAAGGTACGACCGTC 4267 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 ||||| ||| ||||| |||||||| | |||||||| || || |||| ||||| ||||| Sbjct 4268 TTCCAACTGTTTGCCAGCGAAGATTAATCGTTGTTGATCGGGGGGAATGCCTTCTTTGTC 4327 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||||| || ||| |||||||| |||||||||||| || || || | |||||| || Sbjct 4328 TTGGATTTTGGCTTTGACGTTTTCAATGGTGTCAGAGGGCTCGACTTCCAAAGTGATGGT 4387 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || || | |||||| Sbjct 4388 TTTGCCGGTAAGAGTCTTCACGAAAATCTGCAT 4420 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || |||||||| || ||||| |||||||| || || | | || | |||||| Sbjct 3981 AGGACTAGATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCGGACAAAGTGCGACCATCT 4040 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || | ||||||||| || || || | |||||||| || ||||||| ||||||||||| Sbjct 4041 TCTAACTGCTTGCCGGCAAAAATCAAACGTTGTTGATCGGGAGGAATGCCTTCCTTGTCT 4100 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || ||||| || |||||||| || ||| || || | |||||||||| Sbjct 4101 TGGATTTTAGCCTTGACGTTCTCAATGGTGTCTGATGGTTCGACTTCCAAAGTGATCGTC 4160 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || |||||||| | |||||| Sbjct 4161 TTGCCAGTGAGGGTTTTTACAAAAATCTGCAT 4192 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | || || || || || ||||| ||||| || || | ||||| | || ||| Sbjct 4665 AGGACCAAATGGAGTGTAGATTCCTTTTGAATGTTGTAGTCAGACAGGGTACGACCGTCT 4724 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| || ||||| ||||| || | |||||||| |||||||||| ||||| || || Sbjct 4725 TCCAATTGTTTGCCGGCGAAAATTAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCT 4784 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || ||| ||||| || || ||||| || ||| || || | |||||||||| Sbjct 4785 TGAATTTTGGCTTTGACGTTCTCAATAGTGTCGGAAGGTTCGACTTCCAAAGTGATCGTC 4844 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||||||||| || || || | ||||| Sbjct 4845 TTTCCCGTGAGAGTTTTGACGAAAATTTGCAT 4876 Score = 123 bits (136), Expect = 6e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || ||||| || || || ||||| ||||| || | | ||| | |||||||||| ||| Sbjct 3762 TGGAGAGTTGATTCCTTCTGGATATTATAGTCGGACAAGGTACGACCATCTTCCAATTGC 3821 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || |||||||| | ||||| || || ||||||| ||||||||||| || || || Sbjct 3822 TTACCGGCGAAGATCAAACGTTGCTGATCGGGAGGAATACCTTCCTTGTCTTGAATTTTG 3881 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||| |||||||| |||||||| || |||||| || | ||||| || || ||||| Sbjct 3882 GCTTTGACGTTTTCAATGGTGTCGGACGGTTCAACTTCCAAGGTGATGGTTTTGCCCGTC 3941 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | || || || || | ||||| Sbjct 3942 AAGGTTTTCACGAAGATTTGCAT 3964 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||| ||||| |||||||||||||| || || | | ||| | || ||| Sbjct 4893 AGAACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCAGACAAGGTACGGCCGTCT 4952 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| || ||||| ||||| || | |||||||| || ||||||| ||||| ||||| Sbjct 4953 TCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCGGGAGGAATGCCTTCTTTGTCT 5012 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || |||||||| |||||||| || ||||| || | || || ||| Sbjct 5013 TGGATTTTAGCCTTGACGTTTTCAATGGTGTCGGACGGCTCAACTTCCAAGGTAATGGTC 5072 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | || || || || | ||||| Sbjct 5073 TTGCCAGTCAAGGTTTTGACGAAAATTTGCAT 5104 >seq3468 Length=50068 Score = 140 bits (154), Expect = 8e-28 Identities = 145/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 |||| |||||||| || || | ||| ||||| || ||||||| || ||||| ||||||| Sbjct 38467 CTTTCTGGATGTTGTAGTCAGAAAGAGTCCTGCCGTCTTCCAATTGTTTGCCGGCGAAGA 38408 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 | | |||||||| || || || | |||||||||||| ||||| || || || |||| Sbjct 38407 TCAAACGTTGTTGATCGGGGGGGATTCCTTCCTTGTCTTGGATTTTGGCCTTAACATTTT 38348 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 |||| ||||| || || ||||| || ||||| ||||| ||||| | |||||| || | Sbjct 38347 CGATAGTGTCTGAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGTCAAAGTCTTGACGA 38288 Query 211105 ACACCTGCAT 211114 | | |||||| Sbjct 38287 AGATCTGCAT 38278 >seq957 Length=45873 Score = 93.3 bits (102), Expect = 1e-13 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||| | |||||| || || ||||||||||| |||| | ||| Sbjct 36411 ACGAAGGCGGAGCACCAAGTGCAAAGTGGATTCCTTCTGGATGTTATAGTCCGACAAGGT 36352 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 | ||||||||||| |||||||| |||||||| | || ||||| || ||||||| Sbjct 36351 GCGTCCATCTTCCAATTGCTTGCCGGCGAAGATCAAACGCTGTTGATCGGGAGGAA 36296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158251560221585