Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq6222 170 5e-37 seq3468 127 5e-24 seq48292 93.3 1e-13 seq11453 93.3 1e-13 seq37225 84.2 5e-11 >seq6222 Length=12937 Score = 170 bits (188), Expect = 5e-37 Identities = 171/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||| || || ||||| |||||||| |||| ||||| |||| |||||| Sbjct 3971 ACGCAGACGCAGGACTAGATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCGGACAAAGT 4030 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||||| |||||| || || || || | |||||||| ||||| ||||| || Sbjct 4031 GCGACCATCTTCTAACTGCTTGCCGGCAAAAATCAAACGTTGTTGATCGGGAGGAATGCC 4090 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||||||| || ||| || || ||||||||||| | ||| || || || Sbjct 4091 TTCCTTGTCTTGGATTTTAGCCTTGACGTTCTCAATGGTGTCTGATGGTTCGACTTCCAA 4150 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||||||||| || | ||||||| || | ||||| Sbjct 4151 AGTGATCGTCTTGCCAGTGAGGGTTTTTACAAAAATCTGCAT 4192 Score = 168 bits (186), Expect = 2e-36 Identities = 165/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || | ||| || |||||||||||||||| ||||||||| | ||| || | || || Sbjct 4436 CAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGACAAGGTACGACCGTC 4495 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| || ||||| || |||||||| || ||||||||||| || ||||| ||||| ||||| Sbjct 4496 TTCCAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGGAATGCCTTCTTTGTC 4555 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| || || ||| |||||||| || | || || || || ||||| || Sbjct 4556 TTGGATCTTGGCTTTGACGTTTTCAATGGTGTCAGACGGCTCAACTTCCAAAGTGATGGT 4615 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || | ||| | |||||| Sbjct 4616 TTTGCCGGTCAAAGTCTTCACGAAGATTTGCAT 4648 Score = 161 bits (178), Expect = 2e-34 Identities = 171/223 (77%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || ||| | |||||||| ||||| || |||| ||| || |||| ||| || Sbjct 3743 ACGGAGACGCAAGACCAAATGGAGAGTTGATTCCTTCTGGATATTATAGTCGGACAAGGT 3802 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | ||||| || |||||||| | ||||| || ||||| |||||||| Sbjct 3803 ACGACCATCTTCCAATTGCTTACCGGCGAAGATCAAACGTTGCTGATCGGGAGGAATACC 3862 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 |||||||||||| || ||| || || || ||| |||||||| || | ||| || || | Sbjct 3863 TTCCTTGTCTTGAAT-TTTGGCTTTGACGTTTTCAATGGTGTCGGACGGTTCAACTTCCA 3921 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | ||||| || ||||||||||| ||||| | ||| | |||||| Sbjct 3922 AGGTGATGGTTTTGCCCGTCAAGGTTTTCACGAAGATTTGCAT 3964 Score = 152 bits (168), Expect = 1e-31 Identities = 163/213 (77%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || |||||||||||||||| ||||||||| | || || | || ||| Sbjct 4209 AGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATCAGATAAGGTACGACCGTCT 4268 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||| || ||||||||||| | ||||||||| ||||| ||||| ||||| |||||| Sbjct 4269 TCCAACTGTTTGCCAGCGAAGATTAATCGTTGTTGATCGGGGGGAATGCCTTCTTTGTCT 4328 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| ||| || || || ||| |||||||| |||| || || || || ||||| || Sbjct 4329 TGGAT-TTTGGCTTTGACGTTTTCAATGGTGTCAGAGGGCTCGACTTCCAAAGTGATGGT 4387 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | ||| || | ||| | ||||| Sbjct 4388 TTTGCCGGTAAGAGTCTTCACGAAAATCTGCAT 4420 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || |||||||||||||||| ||||| || | ||| || | || ||| Sbjct 4893 AGAACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCAGACAAGGTACGGCCGTCT 4952 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | || || |||||||| || | |||||||| ||||| ||||| ||||| |||||| Sbjct 4953 TCCAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCGGGAGGAATGCCTTCTTTGTCT 5012 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||| || ||| |||||||| || | || || || || || || ||| Sbjct 5013 TGGATTTTAGCCTTGACGTTTTCAATGGTGTCGGACGGCTCAACTTCCAAGGTAATGGTC 5072 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| ||||| | ||| | |||||| Sbjct 5073 TTGCCAGTCAAGGTTTTGACGAAAATTTGCAT 5104 Score = 125 bits (138), Expect = 2e-23 Identities = 153/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || ||||||||||| || | |||||||| | ||| || | |||||||| | ||| Sbjct 5130 TGCAGGGTGGATTCTTTCTGAATGTTGTAATCTGACAACGTACGACCATCTTCCAATTGC 5189 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || |||||||| || | ||||| ||||| || || |||||||| |||||||| || ||| Sbjct 5190 TTGCCAGCGAAAATTAAACGTTGCTGGTCAGGGGGGATACCTTCTTTGTCTTGAAT-TTT 5248 Query 225631 TGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || || || ||| ||||| || || | || || || | || || ||||||||||| Sbjct 5249 GGCTTTGACGTTTTCAATGGTATCCGAAGGCTCTACTTCGAGGGTAATAGTCTTGCCCGT 5308 Query 225690 CAAAGTTTTTATGAACACTTGCATTT 225715 || || || | ||| | |||||||| Sbjct 5309 CAGGGTCTTCACGAAGATTTGCATTT 5334 Score = 111 bits (122), Expect = 4e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||||| || ||||| ||||| | ||||| || | || || | || ||| Sbjct 4665 AGGACCAAATGGAGTGTAGATTCCTTTTGAATGTTGTAGTCAGACAGGGTACGACCGTCT 4724 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | || || || ||||| || | |||||||| || || ||||| ||||| || ||| Sbjct 4725 TCCAATTGTTTGCCGGCGAAAATTAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCT 4784 Query 225622 TGGATCTTTTGCTTCACAGCT-TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || || ||| |||| | | || || ||||| || | ||| || || || |||||||| Sbjct 4785 TGAAT-TTTGGCTTTGACGTTCTCAATAGTGTCGGAAGGTTCGACTTCCAAAGTGATCGT 4843 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| ||||| | |||||| | ||| | |||||| Sbjct 4844 CTTTCCCGTGAGAGTTTTGACGAAAATTTGCAT 4876 >seq3468 Length=50068 Score = 127 bits (140), Expect = 5e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 |||| |||| ||||| || | | ||| || || ||||| | || || || ||||||| Sbjct 38467 CTTTCTGGATGTTGTAGTCAGAAAGAGTCCTGCCGTCTTCCAATTGTTTGCCGGCGAAGA 38408 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643 | | |||||||| ||||| || || ||||||||||||||||| || ||| ||| || Sbjct 38407 TCAAACGTTGTTGATCGGGGGGGATTCCTTCCTTGTCTTGGATTTTGGCCTTAACATTTT 38348 Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGA 225703 |||| |||||||| | || || || | ||||| ||||| ||||||||||| || | || Sbjct 38347 CGATAGTGTCTGAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGTCAAAGTCTTGACGA 38288 Query 225704 ACACTTGCAT 225713 | | ||||| Sbjct 38287 AGATCTGCAT 38278 >seq48292 Length=319 Score = 93.3 bits (102), Expect = 1e-13 Identities = 89/113 (79%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 7750 GCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTCCGTCAGTTTCTTT 7809 ||||| ||| ||||||||||||| ||||||||||| | | | |||||| || ||| Sbjct 319 GCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTT 260 Query 7810 GAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGCGTTAGCT 7861 ||||||||||||||||| |||| | | |||| || | || ||||||||||| Sbjct 259 GAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGTCGACTTAACGCGTTAGCT 207 >seq11453 Length=2572 Score = 93.3 bits (102), Expect = 1e-13 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| || ||||| |||||||| |||||||||||||| |||||||| || ||||| || | Sbjct 472 TTCCGGGTGACCGAAAAATCAAAATAAATGTTGATACAGGATAGGGTCCCCTCCTCCAGC 531 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||| |||||||| ||||||| ||||| || ||||| Sbjct 532 TGGGTCAAAAAATGATGTATTAAGATTTCGGTCTGTTAA 570 >seq37225 Length=1400 Score = 84.2 bits (92), Expect = 5e-11 Identities = 87/113 (77%), Gaps = 1/113 (1%) Strand=Plus/Plus Query 7750 GCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTCCGTCAGTTTCTTT 7809 ||||| ||| ||||||||||||| ||||||||||| | | | |||||| || ||| Sbjct 1 GCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTT 60 Query 7810 GAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTTA-CGCGTTAGCT 7861 |||||||| |||||| |||| | | |||| || || ||| |||||||||| Sbjct 61 GAGTTTTAGTCTTGCGACCGTACTCCCCAGGCGGTCTACTTATCGCGTTAGCT 113 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/100 (81%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| |||||| |||||| ||||||||| | |||||||| | || ||| | ||||| Sbjct 678 TGAGAGGATGATCCGCCACACTGGGACTGAGACACGGCCCA-GACTCCTACGGGAGGCAG 620 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAG 6865 |||||| ||||||| ||||||||| | || | ||||| || Sbjct 619 CAGTGGGGAATATTGGACAATGGGGGGAACCCTGATCCAG 580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191604830956526