Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq5580 255 5e-63 >seq5580 Length=7482 Score = 255 bits (282), Expect = 5e-63 Identities = 526/780 (67%), Gaps = 2/780 (0%) Strand=Plus/Plus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 |||||||||||| ||| ||| || |||||||| || ||||||||||| ||||| ||| Sbjct 5332 TTTTGGTATTCGCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTCTAAGGAAATGTTT 5391 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGC 4376 |||||||| || || || || | |||||| || ||| | || | || | Sbjct 5392 TCCATAAAGTCGAAAGGGTTTTCGGAATTGTAAATCTTGGGACATTGAAGTTCGACCAAG 5451 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT 4436 | ||||| || || || || || ||||| |||| | || ||||| || |||| | Sbjct 5452 AGCCGGTCTGCGACGAACTCAATGTACTGTTTCATCAAATCACAGTTCATGCCAAGCATG 5511 Query 4437 CTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATA 4496 || |||| || | ||||| || ||||| |||||| || || || ||| || Sbjct 5512 GCTACCGGTAAAGCATCGGTCAAGAATTCTTGCTCTATAACCACAGCATCGCGGATGATT 5571 Query 4497 TCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAA 4556 | | | | | ||||| || || || | | ||| | || |||||| Sbjct 5572 TGCGTAACGCGAGCGACGCCGGGTTTGTTGACCAAATGTTTGTACATAAGGCAAGCAAAA 5631 Query 4557 TCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATT 4616 || ||||||||||| ||||| | ||| || ||||| ||||| || | |||||||| Sbjct 5632 TCGCAATGCAAACCCTCGTCACGCGAAATGAGCTCGTTGGAAAAAGTAAGACCGGGCATC 5691 Query 4617 AAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCT 4676 ||||||||||| || ||||| || || | |||||| || ||||| || || || || || Sbjct 5692 AAACCTCTCTTCTTCAGCCAGAAAATGGAGGCAAAAGAGCCAGAGAAAAAAATACCCTCG 5751 Query 4677 ACGGCGGCAAACGCTACTAATCGGG-ACCCGAACGAGCTGGCTTTGTCTTTAATCCATTT 4735 ||||| ||||| || | | ||| | | ||| |||| || ||| |||||||| Sbjct 5752 ACGGCTGCAAAGGCGATGACTCGCTCAGCAAAACCTGCTGTGTT-GTCAGAGATCCATTT 5810 Query 4736 TAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTT 4795 || ||||| | || || ||||| || || |||| || | ||||| || | | Sbjct 5811 AAAGGCCCAATCGGCCTTCTTCTTTACACAAGGAAGGGTTTCGATAGCTCGGAACAGCAT 5870 Query 4796 ACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATG 4855 ||| ||| || | | ||||||||||| |||| || ||||||||| ||||| Sbjct 5871 CTGTTTCTCATCAGGAGATCGGATATAAGTGTCGATTAAAAGTGAATACATTTCGGAATG 5930 Query 4856 TATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || ||||| || |||||||| || ||||| || || | ||||| | || || ||||| Sbjct 5931 AATGTTTTCCATGGCAATCTGGAAGCCGTAGAAACAGCGCGCTTCGGGAACCTGCACTTC 5990 Query 4916 GTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGC 4975 | ||||| || || |||||||| || || || || ||| ||| ||||| || || Sbjct 5991 TTGGGCAAATCGCTCCACCAAGTTTTCATTGACAATGCCATCAGAGGCGGCAAAGAAAGC 6050 Query 4976 CAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATC 5035 |||||| || | |||| || ||| ||||| || | |||| ||| | | |||||| Sbjct 6051 CAAAACGTGGCTGACGAAGTGCTTTTCATCAGGTTTTAACTTTTCCCAATCGCTCAAATC 6110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426734046244457