Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq5375 120 2e-22 >seq5375 Length=21980 Score = 120 bits (132), Expect = 2e-22 Identities = 235/345 (68%), Gaps = 2/345 (1%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||||||| |||||||| || || || | | || |||||||| || || || Sbjct 1124 AGGCCAGTGACGTGGGCCATCATATATGTTAGCAAGGCATAACTGGCGATATTGAAAGGC 1183 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 ||||| | ||||| || | || | ||| || | || || || ||||| || | | Sbjct 1184 ACCCCTAAGCCCATATCAGCTGAACGCTGATACATTTGGCATGAAAGCTCGCCGTTGGCC 1243 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGG 27387 || |||||||| || | |||||| |||||||| ||||| || ||| | ||| Sbjct 1244 ACATAAAACTGCGCTAGGCAGTGGCAAGGAGGAAGTGCCATTTGGGGTAAGGCGCAAGGG 1303 Query 27388 TTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCG 27447 |||||||||| | | ||||| | || ||||||||| | ||||| || | | Sbjct 1304 TTCCAGGCGCTTAAAACCATGCGGCGATCATCTGGGTTGGTTTTGATGGTGTGGAGAATG 1363 Query 27448 TTTTGCAGCTGATCCAC-CCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGC 27506 | || ||| |||||||| || | | | || ||| | ||||| | ||| || || Sbjct 1364 TGTTCCAGTTGATCCACACCTTGTTGGCTA-TAATCTGCATGCATGTTGGAGTATTCGGC 1422 Query 27507 TCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCC 27551 |||||||| | ||| ||||| ||||| || || |||| ||| || Sbjct 1423 GCCGAAATGACGCCACTGGAAGCCGTAGACGGGACCCAAGTCGCC 1467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369234165240899