Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_030929.1 Length=49033 Score E Sequences producing significant alignments: (Bits) Value seq9686 190 6e-44 >seq9686 Length=37809 Score = 190 bits (210), Expect = 6e-44 Identities = 424/629 (67%), Gaps = 13/629 (2%) Strand=Plus/Plus Query 7186 GGAACAGCAGATGATCCGTTGGTTCGGATACCTGCCGAGGTTTCTGATCACCCTGGCTGC 7245 ||| ||||| ||| | |||||||| ||||| ||| | ||||| ||||| || Sbjct 5166 GGAGCAGCAAATGTACGAATGGTTCGGCAGGGTGCCGCAGTTCATCATCACGCTGGCAGC 5225 Query 7246 TGACTACTGCTCCCAGTGCTCCGACGCGGAGTTCTGCGCATTGGTCGAGCATGAGCTCTA 7305 || ||||| || || || ||||| |||||||||||| || | ||||| ||||| || Sbjct 5226 AGATTACTGTTCGCAATGTTCCGATCTGGAGTTCTGCGCCCTGTTAGAGCACGAGCTTTA 5285 Query 7306 CCACATCTGCCAAGAGCACA-ACCAATATGGCGAGCCCAAGTTCACCGAGGAGGGCTTTC 7364 ||||| |||| | | ||| | ||| ||||| ||| |||||||| |||| ||| | | Sbjct 5286 TCACATTAGCCAGGCG-ACAGATGAATTTGGCGCGCCGAAGTTCACGCAGGAAGGCATGC 5344 Query 7365 CAAAGCTGAAGCTCCGCGGGCATGACGTCGAGGAGTTCGTCGGCGTGGTGAGGCGGTACG 7424 |||| |||||||| || || || || || || ||||| ||||| ||||| | || |||| Sbjct 5345 CAAAACTGAAGCTGCGTGGCCACGATGTGGAAGAGTTTGTCGGTGTGGTTCGCCGCTACG 5404 Query 7425 GCCCAAGCAAGGACGTGCAGTATCTCATCGACGCTGCTAGCAGGCCTCCAGAGGTGGCCA 7484 | | ||| || |||||| | | || || || || | ||| | ||||| || Sbjct 5405 GTGCGAGCCGTGAAGTGCAGGAAATGATTGATGCGGCGAATCAGCCAGCGGAGGTTGCTC 5464 Query 7485 AAATTAACATTTCGAGAGCCTGCGGTACGTGCCTGCTGAAGTCGGCAT-AGCCACGACAG 7543 | | | ||| | ||||| ||||| || ||| ||||| ||| | | | ||| | Sbjct 5465 ATCTCGATATTGCCAGAGCTTGCGGGACTTGCATGCTGCGACTGGCTTGAAACTGGACTG 5524 Query 7544 GCCCATGACAGGAA-GAAAAACGATGGCAACCCTGAACAGCGACGTGAAGGCGTTCATCG 7602 || | | ||| | | ||||| | | || || ||||| || ||||||| Sbjct 5525 ---TATAAGACGAATGGTGATTTATGGCTGCATTAAAACCTGATGTGAAAGCCTTCATCG 5581 Query 7603 TTCAGGCGCTGGCCTGTTTCGATACGCCATCCCAGGTTGCGGAATCGGTCAAGAAGGAAT 7662 ||||| ||| || || | || |||||||| || || | || | ||| | || || | Sbjct 5582 TTCAGTTGCTTGCGTGCTATGACACGCCATCGCAAGTGGTCGAGACTGTCCAAAAAGAGT 5641 Query 7663 TCGGCATCGAGGTCAGTCGGCAGCAGATCGAGTCGCACGACCCGAACAAGGTGTGCAGCA 7722 |||||||| || ||| ||||||||| ||| |||||||| |||| ||||| || | | Sbjct 5642 TCGGCATCAAGATCACCCGGCAGCAGGCCGAATCGCACGATCCGACCAAGGCCAGCGGTA 5701 Query 7723 AGGGCCTTGCCGCGAAGTGGCGGATC---CTCTTCGAGGACACCCGCAAGCGCTTCCGCG 7779 || || ||||||| | ||||| | ||| | | || || | ||||||| Sbjct 5702 AGACGCT---CGCGAAGAAGTGGATCGAGATGTTCCACGCGACGCGAGAACGCTTCCTGA 5758 Query 7780 AGGAGATCGCCGACATCCCGATCGCCAAC 7808 || | | |||||| |||||||||||| Sbjct 5759 CCGAAACCAGCGACATTCCGATCGCCAAC 5787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156671120321510