Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq5580 241 2e-58 seq7813 131 2e-25 >seq5580 Length=7482 Score = 241 bits (266), Expect = 2e-58 Identities = 500/744 (67%), Gaps = 3/744 (0%) Strand=Plus/Plus Query 47834 AGACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCC 47893 || ||| || || | ||||| ||||| ||||| ||||| || ||||| || ||||| Sbjct 5316 AGCCATCACGCCGCTCTTTTGGTATTCGCCCACTTTCTTCTCAAAGAAATTCGTCTTGCC 5375 Query 47894 TTCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAA 47953 ||| || || || ||||||||||| || || || || | | ||| ||||| || | | Sbjct 5376 TTCTAAGGAAATGTTTTCCATAAAGTCGAAAGGGTTTTCGGAATTGTAAATCTTGGGACA 5435 Query 47954 TCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACA 48013 | | ||| | || | ||||| ||||| || || || |||||||| ||||| Sbjct 5436 TTGAAGTTCGACCAAGAGCCGGTCTGCGACGAACTCAATGTACTGTTTCATCAAATCACA 5495 Query 48014 ATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGAC 48073 ||||| || | | || |||| ||| || || | || ||||| || ||| || Sbjct 5496 GTTCATGCCAAGCATGGCTACCGGTAAAGCATCGGTCAAGAATTCTTGCTCTATAACCAC 5555 Query 48074 AGCATCCACTATTATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAA 48133 |||||| || || || || | | | ||| | | ||||||||| | Sbjct 5556 AGCATCGCGGATGATTTGCGTAACGCGAGCGACGCCGGGTTTGTTGACCAAATGTTTGTA 5615 Query 48134 CATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAA 48193 ||| | || |||||||| ||||| | ||| || || | ||| | ||||| ||||| Sbjct 5616 CATAAGGCAAGCAAAATCGCAATGCAAACCCTCGTCACGCGAAATGAGCTCGTTGGAAAA 5675 Query 48194 TGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGA 48253 || ||||||||||| | || | || || ||||| || || | || ||||| ||||| Sbjct 5676 AGTAAGACCGGGCATCAAACCTCTCTTCTTCAGCCAGAAAATGGAGGCAAAAGAGCCAGA 5735 Query 48254 AAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTT 48313 || || || || || ||||| ||||| ||| | | || ||| | ||| ||| ||| Sbjct 5736 GAAAAAAATACCCTCGACGGCTGCAAAGGCGATGACTCGCTCAGCAAAACCTGCTGTGTT 5795 Query 48314 GTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTAT 48370 || ||||| |||||||| |||||||||||||||||||| | ||||| || Sbjct 5796 GTCAGAGATCCATTTAAAGGCCCAATCGGCCTTCTTCTTTACACAAGGAAGGGTTTCGAT 5855 Query 48371 AGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACT 48430 ||| || || | | ||| |||| | | | ||||| || |||||||| Sbjct 5856 AGCTCGGAACAGCATCTGTTTCTCATCAGGAGATCGGATATAAGTGTCGATTAAAAGTGA 5915 Query 48431 ATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTC 48490 |||||||||||| ||||| ||||| || || ||||| || ||||| ||||| | |||||| Sbjct 5916 ATACATTTCGGAATGAATGTTTTCCATGGCAATCTGGAAGCCGTAGAAACAGCGCGCTTC 5975 Query 48491 TGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACT 48550 | | ||| || || |||||| || |||| || ||||| || || |||||| Sbjct 5976 GGGAACCTGCACTTCTTGGGCAAATCGCTCCACCAAGTTTTCATTGACAATGCCATCAGA 6035 Query 48551 AGCAGCAAAAAATGCTAATACATG 48574 || ||||| || || || || || Sbjct 6036 GGCGGCAAAGAAAGCCAAAACGTG 6059 >seq7813 Length=5936 Score = 131 bits (144), Expect = 2e-25 Identities = 174/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 77061 TTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTA 77120 ||||| ||||| ||| ||| | ||||| || || ||| | | | | ||| |||| Sbjct 1113 TTCTTCATATCCTCAGACCAGAGATTCCTTTCGGTCAAATCCCGCAACAAATGGTGATTG 1172 Query 77121 ACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 77180 || | ||||||||| |||||||| |||| || | ||||| || ||||| | ||| Sbjct 1173 ACAACTTGAAATTCGCCAGACAAGACTCGTCGCGAATAAATGTTGGACGTATAGGCTTCA 1232 Query 77181 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAAT 77240 | ||| |||||||| ||||||||||| || ||||||||||| ||||| || || | |||| Sbjct 1233 ATAGACTCATTGTTCCCCAAAATTTGTGCCGTAGAAGCAGTAGGCATGGGAGCTAACAAT 1292 Query 77241 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 77300 || ||| | || || ||| | |||||| |||| || |||| ||||||||| Sbjct 1293 AACGAATTACGGACTCCGTGTTTGGCAATTTTAGCTTTCAGTGCGCTCCAGTCCCAAAGA 1352 Query 77301 TC 77302 || Sbjct 1353 TC 1354 Score = 127 bits (140), Expect = 3e-24 Identities = 400/612 (65%), Gaps = 22/612 (4%) Strand=Plus/Plus Query 77552 AATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAAC 77611 || |||| |||| |||| || ||| | || ||||| || || || || | ||| | Sbjct 1741 AAATTTA-CTTCGGGAACTGGGTAAAAGTTGATGTCAATGATCTTGTTCAAATTCCCTGT 1799 Query 77612 AACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAA--TCTTC-CATCTATAACAAA 77668 || ||||| || || || || || | ||| ||| | |||| | ||| | || || Sbjct 1800 GACGACTTTGGTGACTTCTTTGAGCTTGACAAAGTCATACGTCTTATCTTCTTTCACGAA 1859 Query 77669 CATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTG 77728 ||| |||| ||| || ||||| | ||| || || |||| || | | || ||||| Sbjct 1860 CATATTCAGAGCAATGGATGCCAAATTGCAGACAGCTATTTCGTCCGGAGAGGAATATTC 1919 Query 77729 TATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTT 77788 | || || ||||| ||||| |||||||| || ||||| ||||| || || || Sbjct 1920 GACAATTTCCGTACACAGATTCGAGCATTTGATGGTTCCCAGGTTTTGCTGATTAGATTT 1979 Query 77789 TTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGAT 77848 | || || | ||||| || || || | || || || ||||| | || || || || Sbjct 1980 TCGGTTACAGGCATCCTTGTAGAGGATGTAAGGCGTGCCCGTTTCCACTTGGGAGTCAAT 2039 Query 77849 AATAGATTTCCAGAC------GACTCTAGCTTTTATCATAGATTTGTATCGCCTCTCTCT 77902 ||||| ||| | | | | | ||| | | ||||| | ||| Sbjct 2040 AATAGCCGACCAAAGTTGCTGGGCACGAACTTGACGCCGATATTTG------CCCTCGGA 2093 Query 77903 TTCATATTGA--GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGG 77960 ||| || ||| ||||| ||| |||||||| |||||||| | |||| ||| || ||| Sbjct 2094 TTCGTACTGACGGTATAAAGC--TTCAAATTTCTCTCCCCATAGGTCATGCAAGCCCGGG 2151 Query 77961 CATTCATTTGGGCACATCAATGACCA-GTCACCATCTTCCTTAACTCGTTTCATAAAGAG 78019 ||||| ||||||||||| ||| | | |||| | ||| || |||||| Sbjct 2152 CATTCTGCAGGGCACATCAAACTCCACATTTCGTTCTT-TTCAACGCGGCGCATAAACTC 2210 Query 78020 ATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATT 78079 ||||| ||||| || || ||||| ||| || | || |||||||| || || || || Sbjct 2211 GTCAGGCATCCACAGTGCGTAAAATAAATCACGCGCCCTTTGTTCTTCTTTACCAGTGTT 2270 Query 78080 CTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCAT 78139 ||| || ||||| || || || | || |||| ||||| ||||| | ||| || || | Sbjct 2271 CTTCTTGAGATCAAGGAATTCGAAAACGTCAGCGTGCCACGGTTCCAAATAAATAGCAAA 2330 Query 78140 AACTCCAGGTCG 78151 ||||||| || Sbjct 2331 CGCTCCAGGACG 2342 Score = 122 bits (134), Expect = 1e-22 Identities = 174/245 (71%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 76773 TTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCA 76832 ||||||| ||| || | ||| | || | |||||||| || || || |||||||| ||| Sbjct 689 TTATCCACTGTGAATTTAATCGCTGATGCCGCGGGTTTGGTGCGAAGGTAGTACATGCCA 748 Query 76833 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGA 76892 ||||| | || || |||| | ||||||||||| || | |||| |||| | || Sbjct 749 GTTTTCAAGCCTAGCTTCCACGAGAAGAAATGCATGGACGTTAATTTGCCATAATTGGGC 808 Query 76893 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 76952 || ||||| |||| || | ||||| ||||| || ||||| |||||||| || |||| | Sbjct 809 TCTGCTATGTGAACGTTAAGTGACTGGCTTTGGTCAATGAATGCTCCTCTGTCGGCCGAC 868 Query 76953 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCA 77012 ||||| || | || ||| | ||| ||||| | |||||| | | |||||| || Sbjct 869 ATTTTGATGACTATCCGTTGGGAAATCTCCCATACGGTTTTGTACAGCGCTTTGATGTCG 928 Query 77013 TCTGG 77017 || || Sbjct 929 TCAGG 933 Score = 105 bits (116), Expect = 9e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 77355 GATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAAT 77414 ||||| | ||||||| |||||| ||||| |||| |||| ||||||| || ||||| Sbjct 1462 GATCCTTCATATGTTGAATAAGGCCCTTCCTTTTCTGCTAATTCACAAGAAGCCTCCAAA 1521 Query 77415 GCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCA 77474 ||||||||||| | ||||||||||||| | || || ||| |||||| ||| Sbjct 1522 GCTCCGTAATACAAAGTTTCGAAAATCTGGATGTTCAGTGTTTGAGCTTCAGCGGATTCA 1581 Query 77475 AACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGT 77534 || ||||| | | | |||||| || |||||||| || || || || || || || ||| Sbjct 1582 AAGGGATATCGCATTAAAATAAAAGCGTCTGCTAAGCCTTGGACGCCGATTCCGATCGGT 1641 Query 77535 C 77535 | Sbjct 1642 C 1642 Score = 105 bits (116), Expect = 9e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||| | |||||||||||||| || || || || || ||||||||||| || ||||||||| Sbjct 3054 GTTGCAGCATTAAATAATGTAGGTGACGCGTGTGTGAACCATTTTTCTGACAGTAGATTG 3113 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || ||||| || ||||| || || || ||||| || || | || | ||||||| Sbjct 3114 TAAGTTTCGATCGCTGAATCGATATCTTCGCCGTGAATGCCAACTGAGACTCTCATCAAC 3173 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 |||||||| || | ||||||| Sbjct 3174 ATATGCTGCGGACGTTCAACC 3194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694142336566560