Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq5580 235 8e-57 seq7813 134 2e-26 >seq5580 Length=7482 Score = 235 bits (260), Expect = 8e-57 Identities = 512/764 (67%), Gaps = 7/764 (1%) Strand=Plus/Plus Query 46326 CATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 46385 ||| || || | ||||||||||| || || ||||| || ||||| || |||||||| Sbjct 5319 CATCACGCCGCTCTTTTGGTATTCGCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTC 5378 Query 46386 CAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCC 46445 || || || ||||||||||| || || || || ||| ||||| || | || Sbjct 5379 TAAGGAAATGTTTTCCATAAAGTCGAAAGGGTTTTCGGAATTGTAAATCTTGGGACATTG 5438 Query 46446 TAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATT 46505 | ||| | || | ||||| ||||| || || ||| |||||||| ||||| || Sbjct 5439 AAGTTCGACCAAGAGCCGGTCTGCGACGAACTCAATGTACTGTTTCATCAAATCACAGTT 5498 Query 46506 CATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGC 46565 ||| || | | ||||||| ||| || || | || ||||| || ||| ||||| Sbjct 5499 CATGCCAAGCATGGCTACCGGTAAAGCATCGGTCAAGAATTCTTGCTCTATAACCACAGC 5558 Query 46566 ATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACAT 46625 ||| || || || || | | | ||| | | ||||||||| |||| Sbjct 5559 ATCGCGGATGATTTGCGTAACGCGAGCGACGCCGGGTTTGTTGACCAAATGTTTGTACAT 5618 Query 46626 TAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGT 46685 | || |||||||| ||||| | || || || | ||| | ||||| ||||| || Sbjct 5619 AAGGCAAGCAAAATCGCAATGCAAACCCTCGTCACGCGAAATGAGCTCGTTGGAAAAAGT 5678 Query 46686 GAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAA 46745 || || ||||| | || | ||| || ||||| || || | || ||||| ||||| || Sbjct 5679 AAGACCGGGCATCAAACCTCTCTTCTTCAGCCAGAAAATGGAGGCAAAAGAGCCAGAGAA 5738 Query 46746 GAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATG 46805 || || || || || || || || |||| | || ||| | ||| || || | Sbjct 5739 AAAAATACCCTCGACGGCTGCAAAGGCGATGACTCGCTCAGCAAAACCTGCTGTGTTGTC 5798 Query 46806 A---ATCCACCTTTGA--GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATA 46860 | ||||| ||| | |||||||| ||||| |||||||||||||| | ||||| ||| Sbjct 5799 AGAGATCCA--TTTAAAGGCCCAATCGGCCTTCTTCTTTACACAAGGAAGGGTTTCGATA 5856 Query 46861 GCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTA 46920 || || || | | ||| |||||| | | | ||| || || |||||||| | Sbjct 5857 GCTCGGAACAGCATCTGTTTCTCATCAGGAGATCGGATATAAGTGTCGATTAAAAGTGAA 5916 Query 46921 TACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 46980 |||||||| |||||||||||||| || || ||||| || ||||| ||||| | ||||| Sbjct 5917 TACATTTCGGAATGAATGTTTTCCATGGCAATCTGGAAGCCGTAGAAACAGCGCGCTTCG 5976 Query 46981 GTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTA 47040 | || ||| || ||| |||||| || ||| || ||||| || || |||||| Sbjct 5977 GGAACCTGCACTTCTTGGGCAAATCGCTCCACCAAGTTTTCATTGACAATGCCATCAGAG 6036 Query 47041 GCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATC 47084 || ||||| || ||||| || || | | || | |||||||| Sbjct 6037 GCGGCAAAGAAAGCCAAAACGTGGCTGACGAAGTGCTTTTCATC 6080 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/127 (76%), Gaps = 4/127 (3%) Strand=Plus/Plus Query 47116 TTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTC 47175 || || | ||||||||||||||| |||||||| || || || ||||| || ||||| | | Sbjct 6236 TTCGACAGATCTACTTCTTCAGCGGTCCAGAAGGAAGCTTCAGCTTTCTTGTACATTTGC 6295 Query 47176 CATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTT--TTGCAAGTA 47233 ||||| || | || | || ||||||| ||||| | ||| || |||| ||| |||| Sbjct 6296 CATATGTCGTGGTACTTAATAGGAAAAAGGACAAAGCGATTAGGGTTTTCCTTG--AGTA 6353 Query 47234 TAGGTTC 47240 |||||| Sbjct 6354 AAGGTTC 6360 >seq7813 Length=5936 Score = 134 bits (148), Expect = 2e-26 Identities = 193/272 (71%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 75656 TTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 75715 ||||| || || ||| ||| | || || ||||| ||| | | | | ||| |||| Sbjct 1113 TTCTTCATATCCTCAGACCAGAGATTCCTTTCGGTCAAATCCCGCAACAAATGGTGATTG 1172 Query 75716 ACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCC 75775 |||| ||||||||| |||||||| |||| ||| | ||||| || ||||| | ||| Sbjct 1173 ACAACTTGAAATTCGCCAGACAAGACTCGTCGCGAATAAATGTTGGACGTATAGGCTTCA 1232 Query 75776 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAAT 75835 | ||| |||||||| ||||||||||| || || |||||||| ||||| || || | |||| Sbjct 1233 ATAGACTCATTGTTCCCCAAAATTTGTGCCGTAGAAGCAGTAGGCATGGGAGCTAACAAT 1292 Query 75836 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 75895 || ||| | || || ||| | |||||| |||| || |||| ||||||||| Sbjct 1293 AACGAATTACGGACTCCGTGTTTGGCAATTTTAGCTTTCAGTGCGCTCCAGTCCCAAAGA 1352 Query 75896 TCTGATGGTACAACATCCCAGAGATCGTATTG 75927 || ||| |||| ||| | |||||| || Sbjct 1353 TCACTTGGAGTCACATTCCACATATCGTACTG 1384 Score = 122 bits (134), Expect = 1e-22 Identities = 174/245 (71%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 75368 TTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCA 75427 ||||||| ||||| | ||| | || | || ||||| || || || |||||||| ||| Sbjct 689 TTATCCACTGTGAATTTAATCGCTGATGCCGCGGGTTTGGTGCGAAGGTAGTACATGCCA 748 Query 75428 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGA 75487 ||||| | || || |||| | ||||||||||| |||| |||| |||| | || Sbjct 749 GTTTTCAAGCCTAGCTTCCACGAGAAGAAATGCATGGACGTTAATTTGCCATAATTGGGC 808 Query 75488 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 75547 || ||||| |||| || | ||||| ||||| || ||||| |||||||| || |||| | Sbjct 809 TCTGCTATGTGAACGTTAAGTGACTGGCTTTGGTCAATGAATGCTCCTCTGTCGGCCGAC 868 Query 75548 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCA 75607 ||||| || | || ||| | ||| ||||| | |||||| | | |||||| || Sbjct 869 ATTTTGATGACTATCCGTTGGGAAATCTCCCATACGGTTTTGTACAGCGCTTTGATGTCG 928 Query 75608 TCTGG 75612 || || Sbjct 929 TCAGG 933 Score = 109 bits (120), Expect = 8e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||| | |||||||| |||||||| || || || |||||||||||||| || ||||||||| Sbjct 3054 GTTGCAGCATTAAATAATGTAGGTGACGCGTGTGTGAACCATTTTTCTGACAGTAGATTG 3113 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || ||||| || ||| || ||||| ||||| || || | ||| | ||||||| Sbjct 3114 TAAGTTTCGATCGCTGAATCGATATCTTCGCCGTGAATGCCAACTGAGACTCTCATCAAC 3173 Query 77114 ATATGCTGAGGTCGTTCTAC 77133 |||||||| || ||||| || Sbjct 3174 ATATGCTGCGGACGTTCAAC 3193 Score = 93.3 bits (102), Expect = 6e-14 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 75950 GATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAAC 76009 ||||| | ||||||| |||| ||| |||||||| |||| ||| ||| ||||| || Sbjct 1462 GATCCTTCATATGTTGAATAAGGCCCTTCCTTTTCTGCTAATTCACAAGAAGCCTCCAAA 1521 Query 76010 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCA 76069 || |||||||| | ||||||||||||| | || || ||| |||||| ||| Sbjct 1522 GCTCCGTAATACAAAGTTTCGAAAATCTGGATGTTCAGTGTTTGAGCTTCAGCGGATTCA 1581 Query 76070 AAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGT 76129 || ||||| | | | |||||| || ||||||| || || || || || || || ||| Sbjct 1582 AAGGGATATCGCATTAAAATAAAAGCGTCTGCTAAGCCTTGGACGCCGATTCCGATCGGT 1641 Query 76130 C 76130 | Sbjct 1642 C 1642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712394093753280