Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq5580 235 8e-57
seq7813 134 2e-26
>seq5580
Length=7482
Score = 235 bits (260), Expect = 8e-57
Identities = 512/764 (67%), Gaps = 7/764 (1%)
Strand=Plus/Plus
Query 46326 CATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 46385
||| || || | ||||||||||| || || ||||| || ||||| || ||||||||
Sbjct 5319 CATCACGCCGCTCTTTTGGTATTCGCCCACTTTCTTCTCAAAGAAATTCGTCTTGCCTTC 5378
Query 46386 CAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCC 46445
|| || || ||||||||||| || || || || ||| ||||| || | ||
Sbjct 5379 TAAGGAAATGTTTTCCATAAAGTCGAAAGGGTTTTCGGAATTGTAAATCTTGGGACATTG 5438
Query 46446 TAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATT 46505
| ||| | || | ||||| ||||| || || ||| |||||||| ||||| ||
Sbjct 5439 AAGTTCGACCAAGAGCCGGTCTGCGACGAACTCAATGTACTGTTTCATCAAATCACAGTT 5498
Query 46506 CATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGC 46565
||| || | | ||||||| ||| || || | || ||||| || ||| |||||
Sbjct 5499 CATGCCAAGCATGGCTACCGGTAAAGCATCGGTCAAGAATTCTTGCTCTATAACCACAGC 5558
Query 46566 ATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACAT 46625
||| || || || || | | | ||| | | ||||||||| ||||
Sbjct 5559 ATCGCGGATGATTTGCGTAACGCGAGCGACGCCGGGTTTGTTGACCAAATGTTTGTACAT 5618
Query 46626 TAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGT 46685
| || |||||||| ||||| | || || || | ||| | ||||| ||||| ||
Sbjct 5619 AAGGCAAGCAAAATCGCAATGCAAACCCTCGTCACGCGAAATGAGCTCGTTGGAAAAAGT 5678
Query 46686 GAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAA 46745
|| || ||||| | || | ||| || ||||| || || | || ||||| ||||| ||
Sbjct 5679 AAGACCGGGCATCAAACCTCTCTTCTTCAGCCAGAAAATGGAGGCAAAAGAGCCAGAGAA 5738
Query 46746 GAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATG 46805
|| || || || || || || || |||| | || ||| | ||| || || |
Sbjct 5739 AAAAATACCCTCGACGGCTGCAAAGGCGATGACTCGCTCAGCAAAACCTGCTGTGTTGTC 5798
Query 46806 A---ATCCACCTTTGA--GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATA 46860
| ||||| ||| | |||||||| ||||| |||||||||||||| | ||||| |||
Sbjct 5799 AGAGATCCA--TTTAAAGGCCCAATCGGCCTTCTTCTTTACACAAGGAAGGGTTTCGATA 5856
Query 46861 GCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTA 46920
|| || || | | ||| |||||| | | | ||| || || |||||||| |
Sbjct 5857 GCTCGGAACAGCATCTGTTTCTCATCAGGAGATCGGATATAAGTGTCGATTAAAAGTGAA 5916
Query 46921 TACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 46980
|||||||| |||||||||||||| || || ||||| || ||||| ||||| | |||||
Sbjct 5917 TACATTTCGGAATGAATGTTTTCCATGGCAATCTGGAAGCCGTAGAAACAGCGCGCTTCG 5976
Query 46981 GTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTA 47040
| || ||| || ||| |||||| || ||| || ||||| || || ||||||
Sbjct 5977 GGAACCTGCACTTCTTGGGCAAATCGCTCCACCAAGTTTTCATTGACAATGCCATCAGAG 6036
Query 47041 GCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATC 47084
|| ||||| || ||||| || || | | || | ||||||||
Sbjct 6037 GCGGCAAAGAAAGCCAAAACGTGGCTGACGAAGTGCTTTTCATC 6080
Score = 84.2 bits (92), Expect = 3e-11
Identities = 96/127 (76%), Gaps = 4/127 (3%)
Strand=Plus/Plus
Query 47116 TTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTC 47175
|| || | ||||||||||||||| |||||||| || || || ||||| || ||||| | |
Sbjct 6236 TTCGACAGATCTACTTCTTCAGCGGTCCAGAAGGAAGCTTCAGCTTTCTTGTACATTTGC 6295
Query 47176 CATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTT--TTGCAAGTA 47233
||||| || | || | || ||||||| ||||| | ||| || |||| ||| ||||
Sbjct 6296 CATATGTCGTGGTACTTAATAGGAAAAAGGACAAAGCGATTAGGGTTTTCCTTG--AGTA 6353
Query 47234 TAGGTTC 47240
||||||
Sbjct 6354 AAGGTTC 6360
>seq7813
Length=5936
Score = 134 bits (148), Expect = 2e-26
Identities = 193/272 (71%), Gaps = 0/272 (0%)
Strand=Plus/Plus
Query 75656 TTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 75715
||||| || || ||| ||| | || || ||||| ||| | | | | ||| ||||
Sbjct 1113 TTCTTCATATCCTCAGACCAGAGATTCCTTTCGGTCAAATCCCGCAACAAATGGTGATTG 1172
Query 75716 ACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCC 75775
|||| ||||||||| |||||||| |||| ||| | ||||| || ||||| | |||
Sbjct 1173 ACAACTTGAAATTCGCCAGACAAGACTCGTCGCGAATAAATGTTGGACGTATAGGCTTCA 1232
Query 75776 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAAT 75835
| ||| |||||||| ||||||||||| || || |||||||| ||||| || || | ||||
Sbjct 1233 ATAGACTCATTGTTCCCCAAAATTTGTGCCGTAGAAGCAGTAGGCATGGGAGCTAACAAT 1292
Query 75836 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 75895
|| ||| | || || ||| | |||||| |||| || |||| |||||||||
Sbjct 1293 AACGAATTACGGACTCCGTGTTTGGCAATTTTAGCTTTCAGTGCGCTCCAGTCCCAAAGA 1352
Query 75896 TCTGATGGTACAACATCCCAGAGATCGTATTG 75927
|| ||| |||| ||| | |||||| ||
Sbjct 1353 TCACTTGGAGTCACATTCCACATATCGTACTG 1384
Score = 122 bits (134), Expect = 1e-22
Identities = 174/245 (71%), Gaps = 0/245 (0%)
Strand=Plus/Plus
Query 75368 TTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCA 75427
||||||| ||||| | ||| | || | || ||||| || || || |||||||| |||
Sbjct 689 TTATCCACTGTGAATTTAATCGCTGATGCCGCGGGTTTGGTGCGAAGGTAGTACATGCCA 748
Query 75428 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGA 75487
||||| | || || |||| | ||||||||||| |||| |||| |||| | ||
Sbjct 749 GTTTTCAAGCCTAGCTTCCACGAGAAGAAATGCATGGACGTTAATTTGCCATAATTGGGC 808
Query 75488 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 75547
|| ||||| |||| || | ||||| ||||| || ||||| |||||||| || |||| |
Sbjct 809 TCTGCTATGTGAACGTTAAGTGACTGGCTTTGGTCAATGAATGCTCCTCTGTCGGCCGAC 868
Query 75548 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCA 75607
||||| || | || ||| | ||| ||||| | |||||| | | |||||| ||
Sbjct 869 ATTTTGATGACTATCCGTTGGGAAATCTCCCATACGGTTTTGTACAGCGCTTTGATGTCG 928
Query 75608 TCTGG 75612
|| ||
Sbjct 929 TCAGG 933
Score = 109 bits (120), Expect = 8e-19
Identities = 108/140 (77%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053
||| | |||||||| |||||||| || || || |||||||||||||| || |||||||||
Sbjct 3054 GTTGCAGCATTAAATAATGTAGGTGACGCGTGTGTGAACCATTTTTCTGACAGTAGATTG 3113
Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113
|| ||||| || ||| || ||||| ||||| || || | ||| | |||||||
Sbjct 3114 TAAGTTTCGATCGCTGAATCGATATCTTCGCCGTGAATGCCAACTGAGACTCTCATCAAC 3173
Query 77114 ATATGCTGAGGTCGTTCTAC 77133
|||||||| || ||||| ||
Sbjct 3174 ATATGCTGCGGACGTTCAAC 3193
Score = 93.3 bits (102), Expect = 6e-14
Identities = 129/181 (71%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 75950 GATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAAC 76009
||||| | ||||||| |||| ||| |||||||| |||| ||| ||| ||||| ||
Sbjct 1462 GATCCTTCATATGTTGAATAAGGCCCTTCCTTTTCTGCTAATTCACAAGAAGCCTCCAAA 1521
Query 76010 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCA 76069
|| |||||||| | ||||||||||||| | || || ||| |||||| |||
Sbjct 1522 GCTCCGTAATACAAAGTTTCGAAAATCTGGATGTTCAGTGTTTGAGCTTCAGCGGATTCA 1581
Query 76070 AAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGT 76129
|| ||||| | | | |||||| || ||||||| || || || || || || || |||
Sbjct 1582 AAGGGATATCGCATTAAAATAAAAGCGTCTGCTAAGCCTTGGACGCCGATTCCGATCGGT 1641
Query 76130 C 76130
|
Sbjct 1642 C 1642
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712394093753280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |