Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_031061.1 Length=53431 Score E Sequences producing significant alignments: (Bits) Value seq4723 143 9e-30 >seq4723 Length=43540 Score = 143 bits (158), Expect = 9e-30 Identities = 240/342 (70%), Gaps = 5/342 (1%) Strand=Plus/Plus Query 46330 CGGATGTTCCACTTCGACAAGGAAAACGAGCTCGTGTTATTCGGCGACATCCGGTCTGAA 46389 || |||||| ||||||||| | |||||| || | ||||| | || ||||| | || Sbjct 5337 CGCATGTTCTGGTTCGACAAGCAGGACGAGCGCGCGGTATTCAGTGATATCCGCGCCGAG 5396 Query 46390 CAACACGTTCTCTGTGACGGCCGCGCCCTCTCCATCACCCCCGATGTGATCCTCGACTTC 46449 || || | || || ||||| ||| || |||| ||| || | || || ||| Sbjct 5397 CAGCATGAACTTTGCGACGGTCGCCAGCTGGTTATCAGCCCGGACCTTATTGCTGATTTC 5456 Query 46450 CGCAACCTCCCCTTCGCAACGGAATCGTTCAAGGTCGTAATCTTCGACCCACCACACCTC 46509 || ||| || || || | | || ||||| | ||||| || ||||||||| Sbjct 5457 CGTGCCCTTCCATTTGCCGATCACACATTTCCTGTCGTCGTATTCGATCCCCCACACCTC 5516 Query 46510 ATCCGCGTCGGAGCGAACGCATGGATGGGGAAGAAGTACGGGAGGCTGT-CACCGA--CC 46566 |||||||| | ||||| |||||||| || ||||||||| |||| || || | Sbjct 5517 GAGCGCGTCGGCGATAACGCGTGGATGGGTAAAAAGTACGGGCGGCTCAACAAAGAAACA 5576 Query 46567 TGGCGGGACGACCTGGCGGCGGGTTTCGCTGAGTGCTTCCGCGTGCT-CGACGACTACGG 46625 ||||| || ||||| || || ||| | || ||||||||||| || | || |||| Sbjct 5577 TGGCGCGATGACCTTCGTGCTGGATTCTCCGAAGCATTCCGCGTGCTGCGGCCAC-ACGG 5635 Query 46626 CGTCCTCATCTTCAAATGGAACGAGACGCAGATCCCGGTAAG 46667 ||| |||||||||||||||||||| ||||||||||||||||| Sbjct 5636 CGTACTCATCTTCAAATGGAACGAAACGCAGATCCCGGTAAG 5677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170734587760514