Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq6222 129 1e-24
seq3468 109 1e-18
>seq6222
Length=12937
Score = 129 bits (142), Expect = 1e-24
Identities = 152/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960
||| || || || ||||| || ||||||||||| | || || | |||||||| |
Sbjct 5129 ATGCAGGGTGGATTCTTTCTGAATGTTGTAATCTGACAACGTACGACCATCTTCCAATTG 5188
Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020
|| || ||||| || | | |||||||| | | ||| ||||| || |||||||||||
Sbjct 5189 CTTGCCAGCGAAAATTAAACGTTGCTGGTCAGGGGGGATACCTTCTTTGTCTTGAATTTT 5248
Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080
|||||| | || | | | || ||| ||||||||| || |||||||| ||||||||
Sbjct 5249 GGCTTTGACGTTTTCAATGGTATCCGAAGGCTCTACTTCGAGGGTAATAGTCTTGCCCGT 5308
Query 152081 GAGAGTCTTCACGAAGACCTGCATTT 152106
|| ||||||||||||| |||||||
Sbjct 5309 CAGGGTCTTCACGAAGATTTGCATTT 5334
Score = 122 bits (134), Expect = 2e-22
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| |||||||||||||| ||||| ||||||||||| |||| ||||| | ||||||
Sbjct 3981 AGGACTAGATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCGGACAAAGTGCGACCATCT 4040
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|||| || ||||| || || | | || || || | | || |||||||| |||
Sbjct 4041 TCTAACTGCTTGCCGGCAAAAATCAAACGTTGTTGATCGGGAGGAATGCCTTCCTTGTCT 4100
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| ||||| ||||| |||| | | ||||||| || ||||| | ||| || ||
Sbjct 4101 TGGATTTTAGCCTTGACGTTCTCAATGGTGTCTGATGGTTCGACTTCCAAAGTGATCGTC 4160
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| ||||| || || || || | ||||||
Sbjct 4161 TTGCCAGTGAGGGTTTTTACAAAAATCTGCAT 4192
Score = 114 bits (126), Expect = 3e-20
Identities = 151/208 (73%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| ||||| || || ||||||||||| |||||||| | ||| || | || ||||| |
Sbjct 4214 CAAG-TGAAGGGTGGATTCTTTTTGGATATTGTAATCAGATAAGGTACGACCGTCTTCCA 4272
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
||| || |||||||| | | || || || | | || ||||| || ||||| |
Sbjct 4273 ACTGTTTGCCAGCGAAGATTAATCGTTGTTGATCGGGGGGAATGCCTTCTTTGTCTTGGA 4332
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
|||| |||||| | || | | |||| || ||| ||||| | ||| || |||||||
Sbjct 4333 TTTTGGCTTTGACGTTTTCAATGGTGTCAGAGGGCTCGACTTCCAAAGTGATGGTTTTGC 4392
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| || |||||||||||||| | ||||||
Sbjct 4393 CGGTAAGAGTCTTCACGAAAATCTGCAT 4420
Score = 114 bits (126), Expect = 3e-20
Identities = 151/208 (73%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| ||||| || || ||||||||||| |||||||| | || || | || ||||| |
Sbjct 4442 CAAG-TGAAGGGTGGATTCTTTTTGGATATTGTAATCAGACAAGGTACGACCGTCTTCCA 4500
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| || ||||||||||| || | || ||||| | | || ||||| || ||||| |
Sbjct 4501 GTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGGAATGCCTTCTTTGTCTTGGA 4560
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| || |||||| | || | | |||| || ||| ||||| | ||| || |||||||
Sbjct 4561 TCTTGGCTTTGACGTTTTCAATGGTGTCAGACGGCTCAACTTCCAAAGTGATGGTTTTGC 4620
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| || | |||||||||||||| |||||
Sbjct 4621 CGGTCAAAGTCTTCACGAAGATTTGCAT 4648
Score = 100 bits (110), Expect = 7e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954
||| | ||| ||||| || || || ||||| || || |||| || || | ||||||||
Sbjct 3755 GACCAAATGGAGAGTTGATTCCTTCTGGATATTATAGTCGGACAAGGTACGACCATCTTC 3814
Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014
| || ||||||||||| | | ||||| || | | || |||||||| |||||
Sbjct 3815 CAATTGCTTACCGGCGAAGATCAAACGTTGCTGATCGGGAGGAATACCTTCCTTGTCTTG 3874
Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074
|||||| |||||| | || | | |||| || || ||||| | || || |||||
Sbjct 3875 AATTTTGGCTTTGACGTTTTCAATGGTGTCGGACGGTTCAACTTCCAAGGTGATGGTTTT 3934
Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|||||| | || |||||||||| |||||
Sbjct 3935 GCCCGTCAAGGTTTTCACGAAGATTTGCAT 3964
Score = 98.7 bits (108), Expect = 2e-15
Identities = 153/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | |||||| | ||| || ||||| || ||||| |||||||| || | | || |
Sbjct 4658 GAGACGGAGGACCAAATGGAGTGTAGATTCCTTTTGAATGTTGTAGTCAGACAGGGTACG 4717
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
|| ||||| | ||| |||||||| || | | || || || | | || |||||
Sbjct 4718 ACCGTCTTCCAATTGTTTGCCGGCGAAAATTAAACGTTGTTGATCAGGAGGAATGCCTTC 4777
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
|| ||||||||||| |||||| |||| | |||| ||| || ||||| | |||
Sbjct 4778 TTTATCTTGAATTTTGGCTTTGACGTTCTCAATAGTGTCGGAAGGTTCGACTTCCAAAGT 4837
Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || ||||||||||| || ||||| | |||||
Sbjct 4838 GATCGTCTTTCCCGTGAGAGTTTTGACGAAAATTTGCAT 4876
>seq3468
Length=50068
Score = 109 bits (120), Expect = 1e-18
Identities = 138/190 (73%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 151915 CTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGA 151974
|||| ||||||||||| || | | ||| || || ||||| | ||| ||||||||||
Sbjct 38467 CTTTCTGGATGTTGTAGTCAGAAAGAGTCCTGCCGTCTTCCAATTGTTTGCCGGCGAAGA 38408
Query 151975 TAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCT 152034
| | | || || || | | |||||||||||| ||||| ||||| || ||| | |
Sbjct 38407 TCAAACGTTGTTGATCGGGGGGGATTCCTTCCTTGTCTTGGATTTTGGCCTTAACATTTT 38348
Query 152035 CTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094
| | |||||||| ||| || ||||| || || || || ||||| | |||||| ||||
Sbjct 38347 CGATAGTGTCTGAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGTCAAAGTCTTGACGA 38288
Query 152095 AGACCTGCAT 152104
||| ||||||
Sbjct 38287 AGATCTGCAT 38278
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1152924501546059
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |