Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq6222 129 1e-24 seq3468 109 1e-18 >seq6222 Length=12937 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| || || || ||||| || ||||||||||| | || || | |||||||| | Sbjct 5129 ATGCAGGGTGGATTCTTTCTGAATGTTGTAATCTGACAACGTACGACCATCTTCCAATTG 5188 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 || || ||||| || | | |||||||| | | ||| ||||| || ||||||||||| Sbjct 5189 CTTGCCAGCGAAAATTAAACGTTGCTGGTCAGGGGGGATACCTTCTTTGTCTTGAATTTT 5248 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 |||||| | || | | | || ||| ||||||||| || |||||||| |||||||| Sbjct 5249 GGCTTTGACGTTTTCAATGGTATCCGAAGGCTCTACTTCGAGGGTAATAGTCTTGCCCGT 5308 Query 152081 GAGAGTCTTCACGAAGACCTGCATTT 152106 || ||||||||||||| ||||||| Sbjct 5309 CAGGGTCTTCACGAAGATTTGCATTT 5334 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| |||||||||||||| ||||| ||||||||||| |||| ||||| | |||||| Sbjct 3981 AGGACTAGATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCGGACAAAGTGCGACCATCT 4040 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 |||| || ||||| || || | | || || || | | || |||||||| ||| Sbjct 4041 TCTAACTGCTTGCCGGCAAAAATCAAACGTTGTTGATCGGGAGGAATGCCTTCCTTGTCT 4100 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| ||||| |||| | | ||||||| || ||||| | ||| || || Sbjct 4101 TGGATTTTAGCCTTGACGTTCTCAATGGTGTCTGATGGTTCGACTTCCAAAGTGATCGTC 4160 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| || || || || | |||||| Sbjct 4161 TTGCCAGTGAGGGTTTTTACAAAAATCTGCAT 4192 Score = 114 bits (126), Expect = 3e-20 Identities = 151/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || || ||||||||||| |||||||| | ||| || | || ||||| | Sbjct 4214 CAAG-TGAAGGGTGGATTCTTTTTGGATATTGTAATCAGATAAGGTACGACCGTCTTCCA 4272 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| || |||||||| | | || || || | | || ||||| || ||||| | Sbjct 4273 ACTGTTTGCCAGCGAAGATTAATCGTTGTTGATCGGGGGGAATGCCTTCTTTGTCTTGGA 4332 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| |||||| | || | | |||| || ||| ||||| | ||| || ||||||| Sbjct 4333 TTTTGGCTTTGACGTTTTCAATGGTGTCAGAGGGCTCGACTTCCAAAGTGATGGTTTTGC 4392 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || |||||||||||||| | |||||| Sbjct 4393 CGGTAAGAGTCTTCACGAAAATCTGCAT 4420 Score = 114 bits (126), Expect = 3e-20 Identities = 151/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || || ||||||||||| |||||||| | || || | || ||||| | Sbjct 4442 CAAG-TGAAGGGTGGATTCTTTTTGGATATTGTAATCAGACAAGGTACGACCGTCTTCCA 4500 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||||||||| || | || ||||| | | || ||||| || ||||| | Sbjct 4501 GTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAGGGGGAATGCCTTCTTTGTCTTGGA 4560 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || |||||| | || | | |||| || ||| ||||| | ||| || ||||||| Sbjct 4561 TCTTGGCTTTGACGTTTTCAATGGTGTCAGACGGCTCAACTTCCAAAGTGATGGTTTTGC 4620 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | |||||||||||||| ||||| Sbjct 4621 CGGTCAAAGTCTTCACGAAGATTTGCAT 4648 Score = 100 bits (110), Expect = 7e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| | ||| ||||| || || || ||||| || || |||| || || | |||||||| Sbjct 3755 GACCAAATGGAGAGTTGATTCCTTCTGGATATTATAGTCGGACAAGGTACGACCATCTTC 3814 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | || ||||||||||| | | ||||| || | | || |||||||| ||||| Sbjct 3815 CAATTGCTTACCGGCGAAGATCAAACGTTGCTGATCGGGAGGAATACCTTCCTTGTCTTG 3874 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 |||||| |||||| | || | | |||| || || ||||| | || || ||||| Sbjct 3875 AATTTTGGCTTTGACGTTTTCAATGGTGTCGGACGGTTCAACTTCCAAGGTGATGGTTTT 3934 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||| | || |||||||||| ||||| Sbjct 3935 GCCCGTCAAGGTTTTCACGAAGATTTGCAT 3964 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| | ||| || ||||| || ||||| |||||||| || | | || | Sbjct 4658 GAGACGGAGGACCAAATGGAGTGTAGATTCCTTTTGAATGTTGTAGTCAGACAGGGTACG 4717 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || ||||| | ||| |||||||| || | | || || || | | || ||||| Sbjct 4718 ACCGTCTTCCAATTGTTTGCCGGCGAAAATTAAACGTTGTTGATCAGGAGGAATGCCTTC 4777 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 || ||||||||||| |||||| |||| | |||| ||| || ||||| | ||| Sbjct 4778 TTTATCTTGAATTTTGGCTTTGACGTTCTCAATAGTGTCGGAAGGTTCGACTTCCAAAGT 4837 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||||||||| || ||||| | ||||| Sbjct 4838 GATCGTCTTTCCCGTGAGAGTTTTGACGAAAATTTGCAT 4876 >seq3468 Length=50068 Score = 109 bits (120), Expect = 1e-18 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 151915 CTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGA 151974 |||| ||||||||||| || | | ||| || || ||||| | ||| |||||||||| Sbjct 38467 CTTTCTGGATGTTGTAGTCAGAAAGAGTCCTGCCGTCTTCCAATTGTTTGCCGGCGAAGA 38408 Query 151975 TAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCT 152034 | | | || || || | | |||||||||||| ||||| ||||| || ||| | | Sbjct 38407 TCAAACGTTGTTGATCGGGGGGGATTCCTTCCTTGTCTTGGATTTTGGCCTTAACATTTT 38348 Query 152035 CTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 | | |||||||| ||| || ||||| || || || || ||||| | |||||| |||| Sbjct 38347 CGATAGTGTCTGAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGTCAAAGTCTTGACGA 38288 Query 152095 AGACCTGCAT 152104 ||| |||||| Sbjct 38287 AGATCTGCAT 38278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152924501546059