Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_032111.1
Length=163005
Score E
Sequences producing significant alignments: (Bits) Value
seq5580 163 3e-35
>seq5580
Length=7482
Score = 163 bits (180), Expect = 3e-35
Identities = 513/788 (65%), Gaps = 10/788 (1%)
Strand=Plus/Plus
Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTT-TCGAAAAAATTTGTCTTACCCT 23263
||| || || | ||||| ||||| || || |||| || || ||||| ||||| || |
Sbjct 5319 CATCACGCCGCTCTTTTGGTATTCGCCCACTT-TCTTCTCAAAGAAATTCGTCTTGCCTT 5377
Query 23264 CTAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTT--ACA 23321
|||| || || ||||||||||| || || || || | ||| || | ||| |||
Sbjct 5378 CTAAGGAAATGTTTTCCATAAAGTCGAAAGGGTTTTCGGAATTGTAAAT--CTTGGGACA 5435
Query 23322 TGATAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATA 23381
| | ||| || |||| ||||| || || ||||| || || |||||||||| |
Sbjct 5436 TTGAAGTTCGACCAAGAGCCGGTCTGCGACGAACTCAATGTACTGTTTCATCAAATCACA 5495
Query 23382 GTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAAC 23441
||| || || | | ||| || | ||||| |||||| || || || ||
Sbjct 5496 GTTCATGCCAAGCATGGCTACCGGTAAAGCATCGGTCAAGAATTCTTGCTCTATAACCAC 5555
Query 23442 AGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATACTTAAA 23501
|||||| || ||||| || | | | ||| | |||| || |
Sbjct 5556 AGCATCGCGGATGATTTGCGTAACGCGAGCGACGCCGGGTTTGTTGACCAAATGTTTGTA 5615
Query 23502 CAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAA 23561
|| | || |||||||| ||||| | || || || | ||| | || || |||||
Sbjct 5616 CATAAGGCAAGCAAAATCGCAATGCAAACCCTCGTCACGCGAAATGAGCTCGTTGGAAAA 5675
Query 23562 TGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGA 23621
|| | || ||||| || |||| || || | ||| || || | ||||| || || ||
Sbjct 5676 AGTAAGACCGGGCATCAAACCTCTCTTCTTCAGCCAGAAAATGGAGGCAAAAGAGCCAGA 5735
Query 23622 AAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATA 23681
|| ||||||||||| || || |||||||| | | || | |||| ||| | |
Sbjct 5736 GAAAAAAATACCCTCGACGGCTGCAAAGGCGATGACTCGCTCAGCAAAACCTGCTGTGTT 5795
Query 23682 ATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAAT 23741
||||| |||||||| | ||||| |||||| |||||||| || ||||| ||
Sbjct 5796 GTCAGAGATCCATTTAAAGGCCCAATCGGCCTTCTTCTTTACACAAGGAAGGGTTTCGAT 5855
Query 23742 TGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACT 23801
||| || || | ||| || ||| | | ||||| || || |||| ||| |
Sbjct 5856 AGCTCGGAACAGCATCTGTTTCTCATCAGGAGATCGGATATAAGTGTCGATTA--AAAGT 5913
Query 23802 --ATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCT 23859
||||||||| |||||||| ||||| || |||||||| || || || ||||| | |||
Sbjct 5914 GAATACATTTCGGAATGAATGTTTTCCATGGCAATCTGGAAGCCGTAGAAACAGCGCGCT 5973
Query 23860 TCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCA 23919
|| | | || || || | ||||| | | || ||||| || ||||| ||||||
Sbjct 5974 TCGGGAACCTGCACTTCTTGGGCAAATCGCTCCACCAAGTTTTCATTGACAATGCCATCA 6033
Query 23920 CTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTT 23979
|| ||||||||||| | ||| | | | || || ||||||||| | ||| |||
Sbjct 6034 GAGGCGGCAAAGAAAGCCAAAACGTGGCTGACGAAGTGCTTTTCATCAGGTTTTAACTTT 6093
Query 23980 TTCCAATC 23987
| ||||||
Sbjct 6094 TCCCAATC 6101
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521092783800600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |