Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq6222 109 4e-19
>seq6222
Length=12937
Score = 109 bits (120), Expect = 4e-19
Identities = 143/193 (74%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 44147 TCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205
||||| ||||| || || |||| | || | || | || |||| ||||| ||||| ||
Sbjct 3774 TCCTTCTGGATATTATAGTCGGACAAGGTA-CGACCATCTTCCAATTGCTTACCGGCGAA 3832
Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG- 44264
||||||||| |||||||| | ||| | ||||||||| | | | | || |||| | |
Sbjct 3833 GATCAAACGTTGCTGATCGGGAGGAATACCTTCCTTGT-CTTGAATTTTGGCTTTGACGT 3891
Query 44265 TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324
|| | |||||||||| | ||| || |||| || || || || ||||| | ||| ||||
Sbjct 3892 TTTCAATGGTGTCGGACGGTTCAACTTCCAAGGTGATGGTTTTGCCCGTCAAGGTTTTCA 3951
Query 44325 CGAAGATTTGCAT 44337
|||||||||||||
Sbjct 3952 CGAAGATTTGCAT 3964
Score = 102 bits (112), Expect = 6e-17
Identities = 165/235 (70%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || || | ||| | || || || ||||| || || || |||||||||||
Sbjct 3959 TTGCATACCACCACGCAGACGCAGGACTAGATGAAGAGTAGATTCTTTCTGGATGTTGTA 4018
Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
|||| | ||| | || || | |||||| |||||||| |||||||| || |||||
Sbjct 4019 GTCGGACAAAGTGCGACCATCTTCTAACTGCTTGCCGGCAAAAATCAAACGTTGTTGATC 4078
Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282
| ||| | |||||||| || || || || | | |||| | |||||||| | |
Sbjct 4079 GGGAGGAATGCCTTCCTTGTCTTGGAT-TTTAGCCTTGACGTTCTCAATGGTGTCTGATG 4137
Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| || |||| || |||||||| || |||||||| || || || || |||||
Sbjct 4138 GTTCGACTTCCAAAGTGATCGTCTTGCCAGTGAGGGTTTTTACAAAAATCTGCAT 4192
Score = 100 bits (110), Expect = 2e-16
Identities = 139/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206
|||||||| |||||||| || | || || |||| |||| || || ||||| ||
Sbjct 4686 TCCTTTTGAATGTTGTAGTCAGACAGGGTACGACCGTCTTCCAATTGTTTGCCGGCGAAA 4745
Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266
|| ||||| || ||||| | ||| | ||||| || || || || |||| | |||
Sbjct 4746 ATTAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCTTGAATTTTG-GCTTTGACGTT 4804
Query 44267 C-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| | || ||||||| | ||| || |||| || ||||||||||||||||| || || ||
Sbjct 4805 CTCAATAGTGTCGGAAGGTTCGACTTCCAAAGTGATCGTCTTTCCCGTGAGAGTTTTGAC 4864
Query 44326 GAAGATTTGCAT 44337
||| ||||||||
Sbjct 4865 GAAAATTTGCAT 4876
Score = 95.1 bits (104), Expect = 9e-15
Identities = 164/233 (70%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || |||| || | || |||| |||||| ||| || |||||||| ||||||||
Sbjct 4418 CATACCGCCTCGCAAACGCAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATC 4477
Query 44167 GG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225
| | || | || |||| ||||| ||||| ||||| ||||| | ||| || || || |
Sbjct 4478 AGACAAGGTA-CGACCGTCTTCCAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAG 4536
Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGAT 44284
|| | ||||| || || ||||| |||| | ||| | |||||||| | |
Sbjct 4537 GGGGAATGCCTTCTTTGTCTTGGATCTTG-GCTTTGACGTTTTCAATGGTGTCAGACGGC 4595
Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || |||| || || || || || || | ||||||||||||||||||||
Sbjct 4596 TCAACTTCCAAAGTGATGGTTTTGCCGGTCAAAGTCTTCACGAAGATTTGCAT 4648
Score = 95.1 bits (104), Expect = 9e-15
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC-GGCGAGTTGGCGCTCGTCGTC 44187
|||| |||||| ||| || |||||||||||||| || | | || | || |||| ||
Sbjct 4896 ACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCAGACAAGGT-ACGGCCGTCTTC 4954
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|| || || || || || |||||||| || ||||| | ||| | ||||| || ||
Sbjct 4955 CAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCGGGAGGAATGCCTTCTTTGTCTTG 5014
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
|| || ||| | || | |||||||||| | || || |||| ||||| |||||
Sbjct 5015 GATTTTAGCCTTGACGTTTTCAATGGTGTCGGACGGCTCAACTTCCAAGGTAATGGTCTT 5074
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
|| || | ||| || ||||| |||||||||
Sbjct 5075 GCCAGTCAAGGTTTTGACGAAAATTTGCATG 5105
Score = 84.2 bits (92), Expect = 2e-11
Identities = 161/235 (69%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || || | || | ||| |||| || || ||| || || || ||||||||
Sbjct 5099 TTGCATGCCACCACGGAGACGCAATACCAAATGCAGGGTGGATTCTTTCTGAATGTTGTA 5158
Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
||| | | || | || |||| ||||| || || || || ||||| ||||| ||
Sbjct 5159 ATCTGACAACGTACGACCATCTTCCAATTGCTTGCCAGCGAAAATTAAACGTTGCTGGTC 5218
Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282
| || | |||||| || || || || |||| | ||| | ||||| || | |
Sbjct 5219 AGGGGGGATACCTTCTTTGTCTTGAATTTTG-GCTTTGACGTTTTCAATGGTATCCGAAG 5277
Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || || | ||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 5278 GCTCTACTTCGAGGGTAATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 5332
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359724397356093
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |