Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq6222 109 4e-19 >seq6222 Length=12937 Score = 109 bits (120), Expect = 4e-19 Identities = 143/193 (74%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 ||||| ||||| || || |||| | || | || | || |||| ||||| ||||| || Sbjct 3774 TCCTTCTGGATATTATAGTCGGACAAGGTA-CGACCATCTTCCAATTGCTTACCGGCGAA 3832 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG- 44264 ||||||||| |||||||| | ||| | ||||||||| | | | | || |||| | | Sbjct 3833 GATCAAACGTTGCTGATCGGGAGGAATACCTTCCTTGT-CTTGAATTTTGGCTTTGACGT 3891 Query 44265 TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 || | |||||||||| | ||| || |||| || || || || ||||| | ||| |||| Sbjct 3892 TTTCAATGGTGTCGGACGGTTCAACTTCCAAGGTGATGGTTTTGCCCGTCAAGGTTTTCA 3951 Query 44325 CGAAGATTTGCAT 44337 ||||||||||||| Sbjct 3952 CGAAGATTTGCAT 3964 Score = 102 bits (112), Expect = 6e-17 Identities = 165/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | ||| | || || || ||||| || || || ||||||||||| Sbjct 3959 TTGCATACCACCACGCAGACGCAGGACTAGATGAAGAGTAGATTCTTTCTGGATGTTGTA 4018 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||| | ||| | || || | |||||| |||||||| |||||||| || ||||| Sbjct 4019 GTCGGACAAAGTGCGACCATCTTCTAACTGCTTGCCGGCAAAAATCAAACGTTGTTGATC 4078 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 | ||| | |||||||| || || || || | | |||| | |||||||| | | Sbjct 4079 GGGAGGAATGCCTTCCTTGTCTTGGAT-TTTAGCCTTGACGTTCTCAATGGTGTCTGATG 4137 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || |||| || |||||||| || |||||||| || || || || ||||| Sbjct 4138 GTTCGACTTCCAAAGTGATCGTCTTGCCAGTGAGGGTTTTTACAAAAATCTGCAT 4192 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 |||||||| |||||||| || | || || |||| |||| || || ||||| || Sbjct 4686 TCCTTTTGAATGTTGTAGTCAGACAGGGTACGACCGTCTTCCAATTGTTTGCCGGCGAAA 4745 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 || ||||| || ||||| | ||| | ||||| || || || || |||| | ||| Sbjct 4746 ATTAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCTTGAATTTTG-GCTTTGACGTT 4804 Query 44267 C-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | || ||||||| | ||| || |||| || ||||||||||||||||| || || || Sbjct 4805 CTCAATAGTGTCGGAAGGTTCGACTTCCAAAGTGATCGTCTTTCCCGTGAGAGTTTTGAC 4864 Query 44326 GAAGATTTGCAT 44337 ||| |||||||| Sbjct 4865 GAAAATTTGCAT 4876 Score = 95.1 bits (104), Expect = 9e-15 Identities = 164/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| || | || |||| |||||| ||| || |||||||| |||||||| Sbjct 4418 CATACCGCCTCGCAAACGCAGAACCAAGTGAAGGGTGGATTCTTTTTGGATATTGTAATC 4477 Query 44167 GG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | | || | || |||| ||||| ||||| ||||| ||||| | ||| || || || | Sbjct 4478 AGACAAGGTA-CGACCGTCTTCCAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCAG 4536 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGAT 44284 || | ||||| || || ||||| |||| | ||| | |||||||| | | Sbjct 4537 GGGGAATGCCTTCTTTGTCTTGGATCTTG-GCTTTGACGTTTTCAATGGTGTCAGACGGC 4595 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||| || || || || || || | |||||||||||||||||||| Sbjct 4596 TCAACTTCCAAAGTGATGGTTTTGCCGGTCAAAGTCTTCACGAAGATTTGCAT 4648 Score = 95.1 bits (104), Expect = 9e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC-GGCGAGTTGGCGCTCGTCGTC 44187 |||| |||||| ||| || |||||||||||||| || | | || | || |||| || Sbjct 4896 ACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCAGACAAGGT-ACGGCCGTCTTC 4954 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || || || || || || |||||||| || ||||| | ||| | ||||| || || Sbjct 4955 CAATTGTTTGCCAGCGAAAATCAAACGTTGTTGATCGGGAGGAATGCCTTCTTTGTCTTG 5014 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || || ||| | || | |||||||||| | || || |||| ||||| ||||| Sbjct 5015 GATTTTAGCCTTGACGTTTTCAATGGTGTCGGACGGCTCAACTTCCAAGGTAATGGTCTT 5074 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || | ||| || ||||| ||||||||| Sbjct 5075 GCCAGTCAAGGTTTTGACGAAAATTTGCATG 5105 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | || | ||| |||| || || ||| || || || |||||||| Sbjct 5099 TTGCATGCCACCACGGAGACGCAATACCAAATGCAGGGTGGATTCTTTCTGAATGTTGTA 5158 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | | || | || |||| ||||| || || || || ||||| ||||| || Sbjct 5159 ATCTGACAACGTACGACCATCTTCCAATTGCTTGCCAGCGAAAATTAAACGTTGCTGGTC 5218 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 | || | |||||| || || || || |||| | ||| | ||||| || | | Sbjct 5219 AGGGGGGATACCTTCTTTGTCTTGAATTTTG-GCTTTGACGTTTTCAATGGTATCCGAAG 5277 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | ||||| ||||| ||||| ||||||||||||||||||||||| Sbjct 5278 GCTCTACTTCGAGGGTAATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 5332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359724397356093