Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26] 60,629 sequences; 109,181,683 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq6222 150 4e-31 seq3468 125 2e-23 >seq6222 Length=12937 Score = 150 bits (166), Expect = 4e-31 Identities = 165/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||||||||| | || || ||||| |||||| | || || ||| || ||| Sbjct 3961 CAAATCTTCGTGAAAACCTTGACGGGCAAAACCATCACCTTGGAAGTTGAACCGTCCGAC 3902 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||||||| || ||||| ||||| ||||| || ||||| || |||||| Sbjct 3901 ACCATTGAAAACGTCAAAGCCAAAATTCAAGACAAGGAAGGTATTCCTCCCGATCAGCAA 3842 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||||||||| || || | |||||||| | || |||| |||| ||||| | Sbjct 3841 CGTTTGATCTTCGCCGGTAAGCAATTGGAAGATGGTCGTAC-CTTGTCCGACTATAATAT 3783 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 ||| || |||||||| || ||| | || ||| | ||| Sbjct 3782 CCAGAAGGAATCAACTCTCCATTTGGTCTTGCGTCTC 3746 Score = 147 bits (162), Expect = 5e-30 Identities = 153/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||||||||| ||||| |||||||| | || || ||| || ||| Sbjct 4873 CAAATTTTCGTCAAAACTCTCACGGGAAAGACGATCACTTTGGAAGTCGAACCTTCCGAC 4814 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||||||| || ||||| || |||||||| || ||||| || || ||| Sbjct 4813 ACTATTGAGAACGTCAAAGCCAAAATTCAAGATAAAGAAGGCATTCCTCCTGATCAACAA 4754 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || |||||||| ||||| | ||||| || | || || | || || ||| | Sbjct 4753 CGTTTAATTTTCGCCGGCAAACAATTGGAAGACGGTCGTACCCTGTCTGACTACAACATT 4694 Query 178104 CAAAAAGAATCAACACTGCAT 178124 ||||| ||||| ||||| ||| Sbjct 4693 CAAAAGGAATCTACACTCCAT 4673 Score = 141 bits (156), Expect = 2e-28 Identities = 159/209 (76%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| ||| | || || ||||| ||||| | || || || || ||| Sbjct 4645 CAAATCTTCGTGAAGACTTTGACCGGCAAAACCATCACTTTGGAAGTTGAGCCGTCTGAC 4586 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||||||| ||||| || ||||||||||| || || || ||||| ||| Sbjct 4585 ACCATTGAAAACGTCAAAGCCAAGATCCAAGACAAAGAAGGCATTCCCCCTGACCAACAA 4526 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCC-GATTATAACGT 178102 || || ||||||||||| || || || ||||| || | || |||| | ||||| || | Sbjct 4525 CGTCTCATCTTCGCCGGCAAGCAACTGGAAGACGGTCGTAC-CTTGTCTGATTACAATAT 4467 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTT 178131 |||||||||||| || || || |||| || Sbjct 4466 CCAAAAAGAATCCACCCTTCA-CTTGGTT 4439 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || ||||| ||||| || || |||||||| | || || ||| |||||| Sbjct 4189 CAGATTTTTGTAAAAACCCTCACTGGCAAGACGATCACTTTGGAAGTCGAACCATCAGAC 4130 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| || || || ||||| ||||| || ||||| || || ||| Sbjct 4129 ACCATTGAGAACGTCAAGGCTAAAATCCAAGACAAGGAAGGCATTCCTCCCGATCAACAA 4070 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || ||||| || ||| | |||||||| | ||| | |||| || ||| || Sbjct 4069 CGTTTGATTTTTGCCGGCAAGCAGTTAGAAGATGGTCGCACTTTGTCCGACTACAACATC 4010 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || |||||||| || || ||||| || Sbjct 4009 CAGAAAGAATCTACTCTTCATCTAGT 3984 Score = 138 bits (152), Expect = 3e-27 Identities = 156/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| ||||| || || ||||| ||||| | || || || ||| ||| Sbjct 4417 CAGATTTTCGTGAAGACTCTTACCGGCAAAACCATCACTTTGGAAGTCGAGCCCTCTGAC 4358 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||||||| || || || ||||||||||| || || || || || ||| Sbjct 4357 ACCATTGAAAACGTCAAAGCCAAAATCCAAGACAAAGAAGGCATTCCCCCCGATCAACAA 4298 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | |||||||| || |||||| | ||||| || | || | | ||||| || || Sbjct 4297 CGATTAATCTTCGCTGGCAAACAGTTGGAAGACGGTCGTACCTTATCTGATTACAATATC 4238 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 ||||||||||| || || || |||| || Sbjct 4237 CAAAAAGAATCCACCCTTCA-CTTGGTT 4211 Score = 138 bits (152), Expect = 3e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || || || || || || || |||||||| || || || || Sbjct 5329 CAAATCTTCGTGAAGACCCTGACGGGCAAGACTATTACCCTCGAAGTAGAGCCTTCGGAT 5270 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||||||| || ||||| ||||||||||| ||||| || ||||||||| Sbjct 5269 ACCATTGAAAACGTCAAAGCCAAAATTCAAGACAAAGAAGGTATCCCCCCTGACCAGCAA 5210 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || || || | |||||||| | || | | ||||| ||| | Sbjct 5209 CGTTTAATTTTCGCTGGCAAGCAATTGGAAGATGGTCGTACGTTGTCAGATTACAACATT 5150 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || |||||||| || |||||| | || ||| | ||| Sbjct 5149 CAGAAAGAATCCACCCTGCATTTGGTATTGCGTCTC 5114 Score = 114 bits (126), Expect = 3e-20 Identities = 153/209 (73%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| | || || || || || ||| | || || || || ||| Sbjct 5101 CAAATTTTCGTCAAAACCTTGACTGGCAAGACCATTACCTTGGAAGTTGAGCCGTCCGAC 5042 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| || || || ||||||||||| || ||||| || || ||| Sbjct 5041 ACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGCATTCCTCCCGATCAACAA 4982 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCC-GATTATAACGT 178102 || | || ||||| || ||||| | ||||| || | || |||| | || || ||| | Sbjct 4981 CGTTTGATTTTCGCTGGCAAACAATTGGAAGACGGCCGTAC-CTTGTCTGACTACAACAT 4923 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTT 178131 |||||||||||| || || || |||| || Sbjct 4922 CCAAAAAGAATCCACCCTTCA-CTTGGTT 4895 >seq3468 Length=50068 Score = 125 bits (138), Expect = 2e-23 Identities = 140/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | || || || || |||||||| ||||| || |||||| Sbjct 38281 CAGATCTTCGTCAAGACTTTGACGGGTAAGACCATCACCCTTGAGGTCGAGCCTTCAGAC 38340 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || || || || ||||| ||||||||||| || || || ||| Sbjct 38341 ACTATCGAAAATGTTAAGGCCAAAATCCAAGACAAGGAAGGAATCCCCCCCGATCAACAA 38400 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| ||||| | ||||| || ||||||||| | || || ||| || Sbjct 38401 CGTTTGATCTTCGCCGGCAAACAATTGGAAGACGGCAGGACTCTTTCTGACTACAACATC 38460 Query 178104 CAAAAAG 178110 || |||| Sbjct 38461 CAGAAAG 38467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202796130695026