Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triops_20cancriformis_20[genbank_20GCA_5F000981345.1_202015-03-26]
60,629 sequences; 109,181,683 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq6222 150 4e-31
seq3468 125 2e-23
>seq6222
Length=12937
Score = 150 bits (166), Expect = 4e-31
Identities = 165/217 (76%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||||||||| | || || ||||| |||||| | || || ||| || |||
Sbjct 3961 CAAATCTTCGTGAAAACCTTGACGGGCAAAACCATCACCTTGGAAGTTGAACCGTCCGAC 3902
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || ||||||||| || ||||| ||||| ||||| || ||||| || ||||||
Sbjct 3901 ACCATTGAAAACGTCAAAGCCAAAATTCAAGACAAGGAAGGTATTCCTCCCGATCAGCAA 3842
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102
|| | ||||||||||| || || | |||||||| | || |||| |||| ||||| |
Sbjct 3841 CGTTTGATCTTCGCCGGTAAGCAATTGGAAGATGGTCGTAC-CTTGTCCGACTATAATAT 3783
Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139
||| || |||||||| || ||| | || ||| | |||
Sbjct 3782 CCAGAAGGAATCAACTCTCCATTTGGTCTTGCGTCTC 3746
Score = 147 bits (162), Expect = 5e-30
Identities = 153/201 (76%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| ||||||||||| ||||| |||||||| | || || ||| || |||
Sbjct 4873 CAAATTTTCGTCAAAACTCTCACGGGAAAGACGATCACTTTGGAAGTCGAACCTTCCGAC 4814
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || |||||||||||| || ||||| || |||||||| || ||||| || || |||
Sbjct 4813 ACTATTGAGAACGTCAAAGCCAAAATTCAAGATAAAGAAGGCATTCCTCCTGATCAACAA 4754
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | || |||||||| ||||| | ||||| || | || || | || || ||| |
Sbjct 4753 CGTTTAATTTTCGCCGGCAAACAATTGGAAGACGGTCGTACCCTGTCTGACTACAACATT 4694
Query 178104 CAAAAAGAATCAACACTGCAT 178124
||||| ||||| ||||| |||
Sbjct 4693 CAAAAGGAATCTACACTCCAT 4673
Score = 141 bits (156), Expect = 2e-28
Identities = 159/209 (76%), Gaps = 3/209 (1%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| |||||||| ||| | || || ||||| ||||| | || || || || |||
Sbjct 4645 CAAATCTTCGTGAAGACTTTGACCGGCAAAACCATCACTTTGGAAGTTGAGCCGTCTGAC 4586
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || ||||||||| ||||| || ||||||||||| || || || ||||| |||
Sbjct 4585 ACCATTGAAAACGTCAAAGCCAAGATCCAAGACAAAGAAGGCATTCCCCCTGACCAACAA 4526
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCC-GATTATAACGT 178102
|| || ||||||||||| || || || ||||| || | || |||| | ||||| || |
Sbjct 4525 CGTCTCATCTTCGCCGGCAAGCAACTGGAAGACGGTCGTAC-CTTGTCTGATTACAATAT 4467
Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTT 178131
|||||||||||| || || || |||| ||
Sbjct 4466 CCAAAAAGAATCCACCCTTCA-CTTGGTT 4439
Score = 138 bits (152), Expect = 3e-27
Identities = 154/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||| || ||||| ||||| || || |||||||| | || || ||| ||||||
Sbjct 4189 CAGATTTTTGTAAAAACCCTCACTGGCAAGACGATCACTTTGGAAGTCGAACCATCAGAC 4130
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| ||||||||||| || || || ||||| ||||| || ||||| || || |||
Sbjct 4129 ACCATTGAGAACGTCAAGGCTAAAATCCAAGACAAGGAAGGCATTCCTCCCGATCAACAA 4070
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | || || ||||| || ||| | |||||||| | ||| | |||| || ||| ||
Sbjct 4069 CGTTTGATTTTTGCCGGCAAGCAGTTAGAAGATGGTCGCACTTTGTCCGACTACAACATC 4010
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| |||||||| || || ||||| ||
Sbjct 4009 CAGAAAGAATCTACTCTTCATCTAGT 3984
Score = 138 bits (152), Expect = 3e-27
Identities = 156/208 (75%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||||||||| ||||| || || ||||| ||||| | || || || ||| |||
Sbjct 4417 CAGATTTTCGTGAAGACTCTTACCGGCAAAACCATCACTTTGGAAGTCGAGCCCTCTGAC 4358
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || ||||||||| || || || ||||||||||| || || || || || |||
Sbjct 4357 ACCATTGAAAACGTCAAAGCCAAAATCCAAGACAAAGAAGGCATTCCCCCCGATCAACAA 4298
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||| | |||||||| || |||||| | ||||| || | || | | ||||| || ||
Sbjct 4297 CGATTAATCTTCGCTGGCAAACAGTTGGAAGACGGTCGTACCTTATCTGATTACAATATC 4238
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131
||||||||||| || || || |||| ||
Sbjct 4237 CAAAAAGAATCCACCCTTCA-CTTGGTT 4211
Score = 138 bits (152), Expect = 3e-27
Identities = 160/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| |||||||| || || || || || || || |||||||| || || || ||
Sbjct 5329 CAAATCTTCGTGAAGACCCTGACGGGCAAGACTATTACCCTCGAAGTAGAGCCTTCGGAT 5270
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || ||||||||| || ||||| ||||||||||| ||||| || |||||||||
Sbjct 5269 ACCATTGAAAACGTCAAAGCCAAAATTCAAGACAAAGAAGGTATCCCCCCTGACCAGCAA 5210
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | || ||||| || || || | |||||||| | || | | ||||| ||| |
Sbjct 5209 CGTTTAATTTTCGCTGGCAAGCAATTGGAAGATGGTCGTACGTTGTCAGATTACAACATT 5150
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139
|| |||||||| || |||||| | || ||| | |||
Sbjct 5149 CAGAAAGAATCCACCCTGCATTTGGTATTGCGTCTC 5114
Score = 114 bits (126), Expect = 3e-20
Identities = 153/209 (73%), Gaps = 3/209 (1%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| ||||| | || || || || || ||| | || || || || |||
Sbjct 5101 CAAATTTTCGTCAAAACCTTGACTGGCAAGACCATTACCTTGGAAGTTGAGCCGTCCGAC 5042
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || |||||||| || || || ||||||||||| || ||||| || || |||
Sbjct 5041 ACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGCATTCCTCCCGATCAACAA 4982
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCC-GATTATAACGT 178102
|| | || ||||| || ||||| | ||||| || | || |||| | || || ||| |
Sbjct 4981 CGTTTGATTTTCGCTGGCAAACAATTGGAAGACGGCCGTAC-CTTGTCTGACTACAACAT 4923
Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTT 178131
|||||||||||| || || || |||| ||
Sbjct 4922 CCAAAAAGAATCCACCCTTCA-CTTGGTT 4895
>seq3468
Length=50068
Score = 125 bits (138), Expect = 2e-23
Identities = 140/187 (75%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || ||| | || || || || |||||||| ||||| || ||||||
Sbjct 38281 CAGATCTTCGTCAAGACTTTGACGGGTAAGACCATCACCCTTGAGGTCGAGCCTTCAGAC 38340
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || || || || || || ||||| ||||||||||| || || || |||
Sbjct 38341 ACTATCGAAAATGTTAAGGCCAAAATCCAAGACAAGGAAGGAATCCCCCCCGATCAACAA 38400
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||||||||| ||||| | ||||| || ||||||||| | || || ||| ||
Sbjct 38401 CGTTTGATCTTCGCCGGCAAACAATTGGAAGACGGCAGGACTCTTTCTGACTACAACATC 38460
Query 178104 CAAAAAG 178110
|| ||||
Sbjct 38461 CAGAAAG 38467
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1202796130695026
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |