Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq29777 111 3e-19 seq21589 93.3 9e-14 seq18082 89.7 1e-12 seq9763 89.7 1e-12 seq21690 87.8 4e-12 >seq29777 Length=19435 Score = 111 bits (122), Expect = 3e-19 Identities = 238/351 (68%), Gaps = 6/351 (2%) Strand=Plus/Minus Query 281730 GGGTTCAGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTC 281789 ||| ||| || ||||| || ||||| | ||| ||| || ||||||||||||| | Sbjct 14443 GGGCTCAACTTTGTGAAAATGTACCTGGGTGACGCAGAGTCCTTGCCACCCTGCAGCCGC 14384 Query 281790 GACCCAAACTGACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGA 281849 | || |||||||| ||| | | ||| ||||| ||||| || ||| | | ||| Sbjct 14383 GTGCCGAACTGACCAATGGGCTGTAGCAGGTTGATGTTGTTGCTGCCCACGAAGTTCTGC 14324 Query 281850 GCCAGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCG 281909 |||||||||||||||||| | ||||| |||||||||||| ||||| |||| Sbjct 14323 GCCAGGTTGACGATTGTCATCATGAGCGACTGCTCACCGTGGTGGTAGGCTGACATTTCG 14264 Query 281910 GCAACATAACCACTGAACTGTGCTACCTTCACGT--CTGATGTCAAGTTGCGTTTGAAAG 281967 || || |||| ||||| || |||||||| | | |||| ||| | |||||| Sbjct 14263 GCGACGGAACCGGCCAACTGCGCCACCTTCACTTCCCGCTTGTC--GTTTCTCTTGAAAC 14206 Query 281968 CGCAATATAATACTTTTCGTTGAGAAGGCTTGAAACCATCAACGACAGACGGAATGCTGC 282027 | | ||| || || || |||||||| ||| |||| | || |||||| | Sbjct 14205 ATGTGAACAGTACCTTACGCTGTCCAGGCTTGAGACCGTCAATCAATGATGGAATGGATC 14146 Query 282028 GTTCCAGGT-CATACCGCGAGAACAAAATAAGTTCCTTGTCAATGAAGTCG 282077 |||| || ||| | ||||||| ||| || || |||| | ||||||| Sbjct 14145 GTTCGTTGTCCATGTTG-GAGAACAGAATCAGCTCTTTGTGCACGAAGTCG 14096 >seq21589 Length=34651 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765 || |||||| ||||||||||||||||||| ||||| ||||||| |||||||||||| Sbjct 24601 GCATGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTC 24542 Query 165766 GAGCCCCACGATGGGC 165781 |||||||||| ||||| Sbjct 24541 GAGCCCCACGTTGGGC 24526 >seq18082 Length=14147 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 1307 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1366 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1367 CCCACGTTGGGC 1378 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 7063 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 7122 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 7123 CCCACGTTGGGC 7134 >seq9763 Length=63115 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 1173 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1114 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1113 CCCACGTTGGGC 1102 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 5850 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 5909 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 5910 CCCACGTTGGGC 5921 >seq21690 Length=11244 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 7373 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 7432 Query 165769 CCCCACGATGGGC 165781 ||||||| |||| Sbjct 7433 CCCCACGTCGGGC 7445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057366384015320