Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2599 340 2e-88 >seq2599 Length=48712 Score = 340 bits (376), Expect = 2e-88 Identities = 980/1499 (65%), Gaps = 33/1499 (2%) Strand=Plus/Minus Query 52791 TTTTATCCTTGTCCAATGTGAATTGAATGG---GAGCGGATGCGGGTTTCGTACGTAGAT 52847 |||| |||| ||||| || || || || | |||| ||| || || || || | | Sbjct 37992 TTTTGTCCT-GTCCACAGTAAACTGGATAGCTTGAGC---TGCAGGCTTTGTGCGCAAGT 37937 Query 52848 AGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGG 52907 | ||||| || || || ||||| || ||| |||||||| ||||| ||| ||||| Sbjct 37936 AATACATGCCTGTCTTGAGACCAAGCTCCCAGCCGTAAAAGTGCATTGATGTCAGTTTAC 37877 Query 52908 AATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCC 52967 |||| | | || || || || | || | || || ||||| ||||| || || || | Sbjct 37876 TATAATTTGTTTCAGCCATGTGAACGTTTAACGACTGGCTTTGGTCGATAAAAGCACCGC 37817 Query 52968 TGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTC 53027 || || ||||| || ||||| |||| || || || ||||| | ||| |||| Sbjct 37816 GATCGGCTGCCATCTTGATGATATTCTTCTGCGGGATCTCCCACACAGTGCGGTAAAGCA 37757 Query 53028 GCTTAATATCTTCTGGAAGGTTTGTATTCTGAATAGATCCACCATCTACCATAATCCTAT 53087 |||| | ||||||||||| || || || | ||| || | ||| || | Sbjct 37756 GCTTGAGATCTTCTGGAATATTGAGCTTTTGGACAGAACCGTTGTAGGCCA----CCAGT 37701 Query 53088 TCTTGA----TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGA 53143 || | | || | ||| |||| ||| || || | | || |||| | ||| | Sbjct 37700 TCGTTACGCATCGCTTCACTCCACAATCCCAGTTCTGTGAGATCTTTAAGCAAATGGTGG 37641 Query 53144 TTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 53203 || ||||| ||||| || || ||||| |||| |||| || | |||||| || |||| Sbjct 37640 TTCACTACCTGAAACTCGCCTGACAACACTCGGCGAGCATATACATTACTTGTGTACGCC 37581 Query 53204 TCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 53263 || | || |||||||| || | || || || || ||||| || ||||| || |||| Sbjct 37580 TCAATGGATTCATTATTGCCAAGTATCTGTGCGGTCGATGCCGTGGGCATGGGAGCCAAT 37521 Query 53264 AATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCC 53321 | | ||| || | | |||| ||| || ||||| |||| || | ||||| | || Sbjct 37520 AGAAGACTGTTCCGTACGCCGT--GTTGTGCAATTTTCACTTTAAGTGCGTCCCAGTCCC 37463 Query 53322 AAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACG 53381 ||||| | || || || | ||||| ||| | | || Sbjct 37462 AAAGAGAAGTAGGGGTGACACCCCACATATCATACTGCAATATACCCTTAGAGACAGGCG 37403 Query 53382 ATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG 53441 | || |||||||| ||||||| ||||| ||||||||||||||| || || ||||| | Sbjct 37402 AGCCAACATATGTCTCGTATGTGCCTTCAACCTCAGCTAGTTCACAGCTTGCTTCTAACG 37343 Query 53442 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAA 53501 ||||||| ||||| ||||| || ||||| || || || || ||||||| ||||||| | Sbjct 37342 CACCGTAGTAAATTGTTTCAAATATCTTTTTGTTAAGTTCCATTGCTTCCGGGCTATCGA 37283 Query 53502 ATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTC 53561 | || | | | ||||| || ||||| | ||||| || |||||||| || || | Sbjct 37282 AAGGTAGACGCATTATGATAAAAGCATCTGCAAGACCTTGTACGCCAATACCAATTGGAC 37223 Query 53562 TATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 53621 ||| | || || |||||||| || | || ||||| ||| ||| ||||||| Sbjct 37222 GATGACGTTTGTTGCCACGCTCAGCTTCCGGGACTGGGTAATAGGTAACATCAATAATTT 37163 Query 53622 TATTGAGGTTTC-TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGT 53680 | || ||||||| || | | | ||| ||| || || | ||| | || || | | Sbjct 37162 TGTTAAGGTTTCGTGTC-ACAAGTTTCGTCACCTCTTTTAATTTTTGGAAGTCGTAATAA 37104 Query 53681 CCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTA 53740 || || | |||||| || | || | ||| || |||||||| || || | |||| Sbjct 37103 CCCTCCTTGACAAACCGATTGAGCGCTAGAGAGGCAAGATTACAGACTGCAATTTCATCG 37044 Query 53741 GCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTT 53800 | | || || | || | || || || | |||| |||||| || ||||| | ||| Sbjct 37043 GGAGACGAGTACTCAATAACTTCTGTACATAAATTAGAACACTTAATCGTTCCAACGTTT 36984 Query 53801 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCA 53860 |||||||| ||||| |||||| |||||||| || || || | || || ||||||||| Sbjct 36983 TGTTGATTGCTCTTACGGTTACATGCATCCTTGTAGAGCATATACGGGGTGCCAGTTTCA 36924 Query 53861 ATCTGGGATTCTATAATCGCTTTCCAGA----CGACACGAGCCTTTATTATAGATTTGTA 53916 |||||| || | ||| || | ||| | | || || | | || | || Sbjct 36923 ATCTGGCTATCAAGAATAGCATACCAAAGTTTCTGAGCGGGCACCTGTCGTAAA----TA 36868 Query 53917 TCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTC 53976 | ||| |||||||| | ||||| |||||||| |||||||| | | Sbjct 36867 GCGGCCTTCCATTTCGTATTTTTCGTACAACTTGTCAAACTCTTCTCCCCAGCAGTCGCT 36808 Query 53977 CAATCCAGGACATTCATCCGGACACATCAACGACC-ACTCTCCGTCATCCTTCACTCGTT 54035 || |||||||| | |||||||| | |||| ||| | | | ||| |||| Sbjct 36807 TAAACCAGGACACGAGTTGGGACACATAAGTGACCAACTGT-CATTATCGGCGACTCTAC 36749 Query 54036 TCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCG 54094 |||||| ||||||||||||||||| || ||| || ||||| | | | |||||| ||| Sbjct 36748 GCATAAACAGATCAGGAATCCAAAGTGC-ATAGAAGAGATCACGCGCACGATGTTCTTCG 36690 Query 54095 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 54154 | || ||||| ||| || |||||||| | | ||| || ||||| || |||| Sbjct 36689 ATGCCGGTATTTTTTCGCAGGTCGAGGAATTCGAAAATGTCTCCGTGCCATGGCTCCAGA 36630 Query 54155 TATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 54214 || || | | | || |||| ||| ||||| ||||| || | || | || || ||| Sbjct 36629 TAAATAGCAAACGCACCTGGCCTTTTATTTCCCCCCTGGTCAACATACCGGGCAGTATTA 36570 Query 54215 TTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATA 54273 || || || | | ||| || | |||||||| || | ||||| || || | ||||| Sbjct 36569 TTGTATACGCGTAGCATGGGTACGATACCATTCGAAGTTCCATTTGTACCAGCTATATA 36511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593471019798720