Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq2939 98.7 1e-15 >seq2939 Length=42873 Score = 98.7 bits (108), Expect = 1e-15 Identities = 340/523 (65%), Gaps = 8/523 (2%) Strand=Plus/Minus Query 145684 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGT--GGATGAAGTCCC 145741 || |||| |||||| | | ||| || || | ||| || | ||| ||| || |||| Sbjct 15460 AGCGGCTGGACGTGGGTTAAGTACACATGTGTGTCACCA--GTCGTATGGACAAAATCCC 15403 Query 145742 CGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGT 145801 | |||| || || || ||| |||| || | || ||||| | ||| ||| |||| Sbjct 15402 CAGGCTTAAGACCAGTATAGTGAGCGATGATATGCGTGAGCAGAGCGTACGAGGCAATGT 15343 Query 145802 TGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCC 145861 |||| ||||| || || |||||||| | ||| ||||||| || || || | ||| | Sbjct 15342 TGAACGGCACACCTAGGCCCATGTCGGCACTGCGTTGGTACAATTGACACGACAACTCAC 15283 Query 145862 CGCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGT 145921 || || ||||||||||| |||| |||||| || || || ||||| || || Sbjct 15282 CGTTGGCAACGTAGAACTGCGCCAGGCAGTGGCACGGTGGAAGCGCCATCTTCTTCAAGT 15223 Query 145922 CCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCC 145981 ||| ||||| || | | | | | | | || || || | ||| | Sbjct 15222 CCGAGACATTCCAAGCAGATAAAATAATGCGGCGGTCATCCGGATTAACCCTGAGCGTGT 15163 Query 145982 CTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGA-GTCCACG 146040 | || | | | | ||||| |||||||| || ||| || | | || | || | Sbjct 15162 CGATAATCTGGGTAATTTGGTCAACGCCCTGATCCGTGTAGTC-GGCGTGCATATCGCTG 15104 Query 146041 TACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCC 146100 || || || |||||||| | ||||||||| ||||| ||||| || || || || |||| Sbjct 15103 TATGCAGCTCCGAAGTGACGCCACTGGAAGCCGTATACGGGGCCGAGATCGCCCTCCTCC 15044 Query 146101 C-TGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTT 146159 | || | || ||| | | || || ||||| || || ||||||| |||||| || Sbjct 15043 CGTGAGAAAAAG-CCGAGCTTATCCAGAAATTCCCGCGATCCATTGGCGTTCCAGATATT 14985 Query 146160 GACGCCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTG 146202 |||||| || | || || || || | | ||| || |||||| Sbjct 14984 CACGCCCTTCTCTGATAGATCCTTTGCATTCGTTGAACCCCTG 14942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589827758086560