Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq5480 107 2e-18 >seq5480 Length=41483 Score = 107 bits (118), Expect = 2e-18 Identities = 148/202 (73%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| ||||| || |||||||| || | ||||| || |||| || || |||||||| Sbjct 1247 GTGGATTCCTTCTGGATGTTATAATCTGAGAGGGTCCGGCCGTCTTCTAGTTGTTTGCCG 1188 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGT-TT 21097 ||| |||| | |||||||| ||| || | ||| || ||||| ||| |||||| || Sbjct 1187 GCAAAAATCAACCTCTGCTGATCCGGCGGGATGCCCTCTTTGTCCTGGAT-TTTTGTCTT 1129 Query 21098 CACCTGGCCGACAGTATCACCGGGCTCCGTT-TCCACGGTAATGGTCTTGCCGGTTAACG 21156 || | ||| ||||| | | || || || | |||||| ||||| || || |||| Sbjct 1128 TACGTTTTCGATCGTATC-CGAGCCTTCGACGTCGAGGGTAATCGTCTTCCCAGTCAACG 1070 Query 21157 TTTTGACAAATATTTGCATTTT 21178 ||||||| || ||||||||||| Sbjct 1069 TTTTGACGAAGATTTGCATTTT 1048 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | || | |||||| ||||| || ||||||||||||| Sbjct 1505 CCTCCGCGAAGACGGAGGACGAGGTGAAGAGTGGATTCCTTCTGGATGTTATAGTCCGAG 1446 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | ||||||||| || ||||| ||| | || || ||||| || || || Sbjct 1445 AGGGTGCGCCCGTCCTCCAATTGCTTGCCGGCAAAGATCAGCCTCTGTTGATCAGGAGGG 1386 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||| ||| |||||| | ||| || ||| |||||| Sbjct 1385 ATGCCCTCCTTGTCCTGGATTTTTGTTTTCACATTCTCGATTGTGTCAGAGGGCTCGACG 1326 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | |||||| || |||||||| | || || || || || ||||| Sbjct 1325 TCGAGGGTAATCGTTTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 1279 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | |||| || ||||||||||||||||| ||||| | ||||| || | || Sbjct 2790 AGCACAAGGTGCAGGGTCGACTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCT 2731 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| |||||||| | || | ||||||||||| || | ||| ||||| || Sbjct 2730 TCGAGCTGCTTGCCCGCGAAGATCAACCTCTGCTGGTCGGGCGGGATGCCCTCCTTATCT 2671 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||| || || | ||| || || |||||| |||| || || ||| Sbjct 2670 TGAATCTTGGCCTTAACGTTTTCGATTGTGTCTGACGGCTCCACCTCCAGTGTGATCGTC 2611 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || ||||| | |||||| ||||| |||||||| Sbjct 2610 TTTCCGGTCAGCGTTTTCACAAAAATTTGCAT 2579 Score = 84.2 bits (92), Expect = 2e-11 Identities = 155/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 20952 CCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGG 21011 || |||| | ||| |||| ||| | ||| || || || ||||| ||||| ||| Sbjct 2106 CCACGCAAACGGAGTACCAGATGGAGCGTGCTTTCTTTCTGGATGTTGTAGTCGTTCAGT 2047 Query 21012 GTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACG 21071 || | | || ||||||||||| ||||| ||||||| | |||||| || ||| | Sbjct 2046 GTGCGACCATCTTCCAGCTGTTTTCCCGCGAAAATAAGACGCTGCTGATCGGGGGGAATA 1987 Query 21072 CCTTCCTTGTCGGCGATCTTTTGT-TTCACCTGGCCGACAGTATCACCGGGCTCCGTTTC 21130 || |||||||| ||| ||| || || || | | | || || | || ||| || Sbjct 1986 CCCTCCTTGTCTTGGAT-TTTAGTCTTGACGTTTTCAATCGTGTCGGCCGGTTCCACCTC 1928 Query 21131 CACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || || ||||||||||| | || ||||| ||||||||||| Sbjct 1927 CAATGTGATTGTCTTGCCGGTGAGGGTCTTGACGAATATTTGCAT 1883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422085440867024