Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq19961 304 1e-77 seq5480 150 2e-31 >seq19961 Length=25414 Score = 304 bits (336), Expect = 1e-77 Identities = 398/545 (73%), Gaps = 6/545 (1%) Strand=Plus/Plus Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | || || ||||||||| | |||||||| ||||||||||| ||||||||| ||| Sbjct 14196 TTCTCCCAAGACGTGCAGGTGACGGAGGCGCGCTGCTTCTACGGGTTTCAGATCATGATG 14255 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAG 116932 |||||| | || |||||||||||||| | | || |||| ||| | | | | || Sbjct 14256 GAGAACATTCATTCGGAAATGTATTCTCTCTTACTCAACACCTACATCACCGATCCCCAG 14315 Query 116933 GAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAG 116992 ||| || | || |||||||||||||||||||| ||| ||||| |||||||||| Sbjct 14316 GAGCGCGACCACCTCTTCAACGCCATCGAGACGATGCCATGCATCAAAAAGAAGGCCGAC 14375 Query 116993 TGGGCGCTGCGCTGGATCGCCGGCA-GA-GAGGCCGCCTTCGGCGAGCGCCTGGTGGCCT 117050 ||||| || |||||||| || | || || ||| ||| |||||||||| | || || | Sbjct 14376 TGGGCCCTTGCCTGGATCG--GGAACGACGACGCCACCTACGGCGAGCGCGTCGTCGCGT 14433 Query 117051 TCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGA 117110 ||||||||||||||||| ||||||| || ||||||| | || || ||| | |||| Sbjct 14434 TCGCGGCCGTCGAGGGCATCTTCTTCAGCGGAGCTTTCGCCTCGATCTTCTGGATGAAGA 14493 Query 117111 AACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTC 117170 ||||||| ||| | ||||| || || | ||| |||||||||||||| | || ||||| Sbjct 14494 AACGCGGACTCCTACCCGGGCTCACCTACAGTAACGAGCTCATCTCACGCGATGAGGGCA 14553 Query 117171 TGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGA-CCGAGCGCGGCG 117229 ||||| || || ||||| ||| |||| |||| |||| || | | |||||| || | Sbjct 14554 TGCATACGGAGTTCGCCTGCTTGATGTTTTGGCATCTGGT-CAACAAGCCGAGCCAGGAG 14612 Query 117230 CGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCG 117289 | || |||| ||| || ||||| || ||||| ||| ||||||||||| || Sbjct 14613 AGAATCCACCAGATTATCAAGGATGCGGTAGCTATCGAACAGGAGTTCCTCACCGAGGCT 14672 Query 117290 CTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTC 117349 ||||| || |||| || | || ||||| ||| ||| ||||||||||| || Sbjct 14673 CTGCCTGTTGCCATGCTCGGCATGAACTGCGATCTCATGAAGCAGTACATCGAGTTTGTG 14732 Query 117350 GCCGA 117354 ||||| Sbjct 14733 GCCGA 14737 >seq5480 Length=41483 Score = 150 bits (166), Expect = 2e-31 Identities = 161/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||||||||| || || ||||| ||||| || ||||| | || || ||| | || Sbjct 1883 ATGCAAATATTCGTCAAGACCCTCACCGGCAAGACAATCACATTGGAGGTGGAACCGGCC 1942 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || ||||| ||||| ||||| | ||||| ||||| || ||| | || || Sbjct 1943 GACACGATTGAAAACG-TCAAGACTAAAATCCAAGACAAGGAGGGTATTCCCCCCGATCA 2001 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | |||||| ||||||||||| || | ||||| || ||||||||||| Sbjct 2002 GCAGCGTCTTATTTTCGCGGGAAAACAGCTGGAAGATGGTCGCACACTGAACGACTACAA 2061 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||| || |||||| ||||| || Sbjct 2062 CATCCAGAAAGAAAGCACGCTCCATCTGGT 2091 Score = 136 bits (150), Expect = 4e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||||||||| ||||||||||| || |||| || || | | | Sbjct 2351 ATGCAGATCTTCGTCAAAACGCTCACTGGCAAAACCATTACGCTCGAGGTTGAGCCAAGC 2410 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| | ||| || |||| ||||| |||||||| || | ||||| Sbjct 2411 GACACCATTGAAAATGTTAAGACGAAGATTCAAGACAAGGAGGGCATTCCGCCTGACCAA 2470 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| |||||| |||||||| || || | |||||| | || |||||| Sbjct 2471 CAGCGTCTCATCTTCGCGGGTAAACAGCTCGAGGATGGTCGCACCTTGTCTGATTACAAC 2530 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 || ||||||||| | || || ||||| ||| Sbjct 2531 ATTCAGAAGGAGTCAACCCTCCATCTGGTG 2560 Score = 132 bits (146), Expect = 5e-26 Identities = 160/215 (74%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 ||||||||||||| ||||| |||||| | || || || || || ||| |||||||||||| Sbjct 1046 GAAAAATGCAAATCTTCGTCAAAACGTTGACTGGGAAGACGATTACCCTCGACGTCGAAG 1105 Query 40745 CCACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG 40803 | | || | | | ||||| | ||| |||||| | ||||||||||||||||| || Sbjct 1106 GCTCGGATACGATCGAAAACG-TAAAGACAAAAATCCAGGACAAAGAGGGCATCCCGCCG 1164 Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 || ||||| | | || | || |||||||| || || |||| || |||||| || Sbjct 1165 GATCAGCAGAGGTTGATTTTTGCCGGCAAACAACTAGAAGACGGCCGGACCCTCTCAGAT 1224 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || |||||||||||||| |||| || || || || Sbjct 1225 TATAACATCCAGAAGGAATCCACCCTTCACCTCGT 1259 Score = 129 bits (142), Expect = 6e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||||||||| || |||| ||||| ||| Sbjct 1507 ATGCAGATTTTCGTGAAGACCCTCACCGGCAAAACCATTACTCTCGAAGTCGAGCCCAGT 1566 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || ||||| | || ||| || | ||||||||||||||||| | || || Sbjct 1567 GACACGATTGAAAACG-TGAAAACAAAGATCCAAGACAAAGAGGGCATCCCACCCGATCA 1625 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || ||||| | ||| || || || ||||| |||| |||||||||| |||||| || Sbjct 1626 ACAGCGTCTCATTTTCGCTGGAAAGCAACTGGAGGACGGTCGCACCCTCAGCGACTATAA 1685 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || |||||||| ||| || || || || Sbjct 1686 TATTCAGAAGGAAAGCACACTCCACCTGGT 1715 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| |||||||| || ||| |||||||||| || | Sbjct 1279 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAAACGATTACCCTCGACGTCGAGCCCTCT 1338 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | || |||||| | ||||| ||||||||||| | || || Sbjct 1339 GACACAATCGAGAATGTGAAAACAAAAATCCAGGACAAGGAGGGCATCCCTCCTGATCAA 1398 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| || |||| |||| |||||||||| ||||| ||| Sbjct 1399 CAGAGGCTGATCTTTGCCGGCAAGCAATTGGAGGACGGGCGCACCCTCTCGGACTATAAC 1458 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||| |||| || || || || Sbjct 1459 ATCCAGAAGGAATCCACTCTTCACCTCGT 1487 Score = 114 bits (126), Expect = 1e-20 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || |||||||| || || || || ||||| | || || || | | Sbjct 2579 ATGCAAATTTTTGTGAAAACGCTGACCGGAAAGACGATCACACTGGAGGTGGAGCCGTCA 2638 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||||| | |||| || |||| || || ||||||||||| | ||||| Sbjct 2639 GACACAATCGAAAACGTT-AAGGCCAAGATTCAAGATAAGGAGGGCATCCCGCCCGACCA 2697 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| ||||||||| ||||| || || | |||||||| |||||||| Sbjct 2698 GCAGAGGTTGATCTTCGCGGGCAAGCAGCTCGAAGATGGCCGCACCCTTTCAGACTACAA 2757 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTG 40908 ||| || |||||| | || ||||| || ||| | || ||| Sbjct 2758 CATTCAAAAGGAGTCGACCCTGCACCTTGTGCTTCGTTTG 2797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515001751736640