Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq5480 89.7 8e-13 >seq5480 Length=41483 Score = 89.7 bits (98), Expect = 8e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || || |||||||| || ||| | || | || | | | Sbjct 1507 ATGCAGATTTTCGTGAAGACCCTCACCGGCAAAACCATTACTCTCGAAGTCGAGCCCAGT 1566 Query 124599 GATACAATTTCTAATTT-AAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| || | |||||| || || ||||| ||||| || || ||||| ||||| Sbjct 1567 GACACGATTGAAAACGTGAAAACA-AAGATCCAAGACAAAGAGGGCATCCCACCCGATCA 1625 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | || ||||| || ||||| ||| | ||||| |||| || | || ||||| Sbjct 1626 ACAGCGTCTCATTTTCGCTGGAAAGCAACTGGAGGACGGTCGCACCCTCAGCGACTATAA 1685 Query 124718 TATTCAAAAAGAA 124730 |||||| || ||| Sbjct 1686 TATTCAGAAGGAA 1698 Score = 86.0 bits (94), Expect = 9e-12 Identities = 154/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||||||||| | ||||| || || ||||| || || || | ||| | ||| | Sbjct 1883 ATGCAAATATTCGTCAAGACCCTCACCGGCAAGACAATCACATTGGAGGTGGAACCGGCC 1942 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | || ||||| ||||| || || ||||| || || ||||| Sbjct 1943 GACACGATTGAAAACGTCAAGACTAAAATCCAAGACAAGGAGGGTATTCCCCCCGATCAG 2002 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | |||||||| || |||||||| | || ||| |||| ||| | | || || || Sbjct 2003 CAGCGTCTTATTTTCGCGGGAAAACAGCTGGAAGATGGTCGCACACTGAACGACTACAAC 2062 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGT 124763 || || |||||| || | ||| |||| | ||||| || ||| Sbjct 2063 ATCCAGAAAGAAAGCACGCTCCATCTGGTACTCCGTTTGCGTGGT 2107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755137159795200