Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq5480 152 4e-32 seq2599 102 7e-17 >seq5480 Length=41483 Score = 152 bits (168), Expect = 4e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | || | ||||| |||| || ||||| || |||||||||||||| | Sbjct 2577 CCTCCACGGAGTCGAAGCACCAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGAC 2518 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||||||||||||||| || ||| ||||||||||||| || || || || Sbjct 2517 AAGGTGCGACCATCCTCGAGCTGTTTACCCGCGAAGATGAGACGCTGTTGGTCAGGCGGA 2458 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 ||||||||||||||| ||| || ||||| | ||| | |||||| | ||| ||| Sbjct 2457 ATGCCCTCCTTGTCTTGAATCTTCGTCTTAACATTTTCAATGGTGTCGCTTGGCTCAACC 2398 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| || | |||||||| || || ||||| || || |||||||| Sbjct 2397 TCGAGCGTAATGGTTTTGCCAGTGAGCGTTTTGACGAAGATCTGCAT 2351 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| ||| || || ||||| || || ||||| | ||||| ||||| Sbjct 1715 ACCAGGTGGAGTGTGCTTTCCTTCTGAATATTATAGTCGCTGAGGGTGCGACCGTCCTCC 1656 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || ||||||||| | ||||||||||| |||||||| || |||||||| |||||| Sbjct 1655 AGTTGCTTTCCAGCGAAAATGAGACGCTGTTGATCGGGTGGGATGCCCTCTTTGTCTTGG 1596 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||| ||| || | ||| | ||||| || |||||| |||| || | |||||| Sbjct 1595 ATCTTTGTTTTCACGTTTTCAATCGTGTCACTGGGCTCGACTTCGAGAGTAATGGTTTTG 1536 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || ||||||||||| Sbjct 1535 CCGGTGAGGGTCTTCACGAAAATCTGCAT 1507 Score = 125 bits (138), Expect = 6e-24 Identities = 162/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 118515 CCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATA 118574 ||||| || | | ||| | ||| | || ||||| |||||||||||||| || | Sbjct 2802 CCGCGCAAACGAAGCACAAGGTGCAGGGTCGACTCCTTTTGAATGTTGTAGTCTGAAAGG 2743 Query 118575 GTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATG 118634 ||||| ||| |||||||| || || ||| |||| | | |||||| ||||| || ||| Sbjct 2742 GTGCGGCCATCTTCGAGCTGCTTGCCCGCGAAGATCAACCTCTGCTGGTCGGGCGGGATG 2683 Query 118635 CCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCG 118694 |||||||| ||| ||| || ||||| | ||||| ||||| | ||| ||||| Sbjct 2682 CCCTCCTTATCTTGAATCTTGGCCTTAACGTTTTCGATTGTGTCTGACGGCTCCACCTCC 2623 Query 118695 ACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | ||| || |||||||| ||||| |||||||| ||||| Sbjct 2622 AGTGTGATCGTCTTTCCGGTCAGCGTTTTCACAAAAATTTGCAT 2579 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 118548 TCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAG 118607 ||||| || |||||||| ||| ||| ||||| ||| || ||||||||||| ||| | Sbjct 2073 TCTTTCTGGATGTTGTAGTCGTTCAGTGTGCGACCATCTTCCAGCTGTTTTCCCGCGAAA 2014 Query 118608 ATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGT 118667 || ||||||||||||||||| || || |||||||||||| ||||| || || | | Sbjct 2013 ATAAGACGCTGCTGATCGGGGGGAATACCCTCCTTGTCTTGGATTTTAGTCTTGACGTTT 1954 Query 118668 TCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 118727 || | ||||| | || ||||| | || | || |||||||| || || || || Sbjct 1953 TCAATCGTGTCGGCCGGTTCCACCTCCAATGTGATTGTCTTGCCGGTGAGGGTCTTGACG 1894 Query 118728 AAAATCTGCAT 118738 || || ||||| Sbjct 1893 AATATTTGCAT 1883 Score = 111 bits (122), Expect = 1e-19 Identities = 161/227 (71%), Gaps = 13/227 (6%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| || | || |||| ||||| || ||||| | |||| |||||| Sbjct 3210 CCTCCGCGCAAACGAAAGACCAGGTGGAGGGTCGACTCCT---GAATATTGTAA------ 3160 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 ||||| ||||||||||||||||| ||| |||| |||||||||||||| || | Sbjct 3159 --AGTGCATCCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGACGCTGCTGATCAGGGGAA 3102 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 ||||||||||| || |||||| || || |||||| |||||| | ||| || Sbjct 3101 ATGCCCTCCTTATCCTGAATTTTAGCCTTGAC--GTTCGATGGTGTCAGACAACTCCACT 3044 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| || | || || |||| || |||| |||||||| ||||| Sbjct 3043 TCGAGCGTGATGGTCTTTGCGGTGAGTGTTTCCACAAAAATTTGCAT 2997 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || || ||||| || || | |||||| ||||| | || || || Sbjct 1475 GTGGATTCCTTCTGGATGTTATAGTCCGAGAGGGTGCGCCCGTCCTCCAATTGCTTGCCG 1416 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| || | ||| ||||| ||||| |||||||||||||| |||||| ||| Sbjct 1415 GCAAAGATCAGCCTCTGTTGATCAGGAGGGATGCCCTCCTTGTCCTGGATTTTTGTTTTC 1356 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||||| | | |||||| |||| ||| | |||||||||||| || || Sbjct 1355 ACATTCTCGATTGTGTCAGAGGGCTCGACGTCGAGGGTAATCGTTTTGCCGGTGAGGGTC 1296 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 1295 TTCACGAAGATCTGCAT 1279 >seq2599 Length=48712 Score = 102 bits (112), Expect = 7e-17 Identities = 347/533 (65%), Gaps = 11/533 (2%) Strand=Plus/Minus Query 132878 GTCGACGGTAAACTTTGTGGCCTGAGCGGCGGGTTTTGTGCGCAAATAATACATGCCCGT 132937 ||| || ||||||| | || ||||| || || ||||||||||| ||||||||||| || Sbjct 37983 GTCCACAGTAAACTGGATAGCTTGAGCTGCAGGCTTTGTGCGCAAGTAATACATGCCTGT 37924 Query 132938 TTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGACACCACCGAGTAAGTGGGTTC 132997 || || |||||| |||||||||| || | || ||| | | ||| Sbjct 37923 CTTGAGACCAAGCTCCCAGCCGTAAAAGTGCATTGATGTCAGTTTACTATAATTTGTTTC 37864 Query 132998 GGCGACAAATAAA--TTCAGCGATTGACTCTGATCTATGAAAGGAGCACGGTCGGCGGCC 133055 || || | || || | ||| || || || || || |||| | | || ||||| ||| Sbjct 37863 AGC--CATGTGAACGTTTAACGACTGGCTTTGGTCGATAAAAGCACCGCGATCGGCTGCC 37806 Query 133056 ATGTTTATTATACACTTTGATTTGATCTCCCATGCCGTCTTGAAGAGATTCTTGACATGC 133115 || || || ||| ||| ||||||||| | || | | || ||||| || Sbjct 37805 ATCTTGATGATATTCTTCTGCGGGATCTCCCACACAGTGCGGTAAAGCAGCTTGAGATCT 37746 Query 133116 TGTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTTCGGCCAAAATCTTGTTGCGCAAT 133175 | ||| || | | | || || || || ||||| | ||||| | | ||| |||| Sbjct 37745 TCTGGAATATTG---AGCTTTTGGACAGAACCGTTGTAGGCCACCAGTTCGTTACGCATC 37689 Query 133176 TCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGACGAGATACTGGTTGACCACTTGA 133235 | | | | | | || || | || |||| | | || ||||| || || ||| Sbjct 37688 GCTTCACTCCACAATCCCAGTTCTGTGAGATCTTTAAGCAAATGGTGGTTCACTACCTGA 37629 Query 133236 AACTCGCCGGCGAGAACGCGTCTGAG-ATATACATTCGACGTGAACGGTTCGAAAGATTC 133294 |||||||| | | || || | ||| ||||||||| ||| ||| || | ||||| Sbjct 37628 AACTCGCCTGACAACACTCGGC-GAGCATATACATTACTTGTGTACGCCTCAATGGATTC 37570 Query 133295 GTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCACCAACAAAGAGTT 133354 || ||||| |||||||| || |||| |||||||||||| |||| | | | ||| Sbjct 37569 ATTATTGCCAAGTATCTGTGCGGTCGATGCCGTGGGCATGGGAGCCAATAGAAGACTGTT 37510 Query 133355 TCTTACGCCGTACTTGTTTATGTTGCACTGCAA-TTCGTTCCAGTCCCACAGA 133406 | |||||||| |||| | || |||| || | ||| ||||||||| ||| Sbjct 37509 CCGTACGCCGT-GTTGTGCAATTTTCACTTTAAGTGCGTCCCAGTCCCAAAGA 37458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433651879332688