Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq5480 122 1e-22 seq10923 105 8e-18 seq25540 100 3e-16 seq25055 96.9 4e-15 seq11963 96.9 4e-15 seq7979 96.9 4e-15 seq27404 95.1 1e-14 seq24182 95.1 1e-14 >seq5480 Length=41483 Score = 122 bits (134), Expect = 1e-22 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| ||| | || |||||| ||||| |||||||||| || || || | || || Sbjct 2560 CACCAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGACAAGGTGCGACCATCCTC 2501 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 ||||| ||||| ||||| ||||| ||||| ||||| | ||| | || ||||||||| | Sbjct 2500 GAGCTGTTTACCCGCGAAGATGAGACGCTGTTGGTCAGGCGGAATGCCCTCCTTGTCT-T 2442 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 || | || || | | | | || | ||||||| | || || |||| ||| ||||||| Sbjct 2441 GAATCTTCGTCTTAACATTTTCAATGGTGTCGCTTGGCTCAACCTCGAGCGTAATGGTTT 2382 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || ||||| || || ||||| ||||| Sbjct 2381 TGCCAGTGAGCGTTTTGACGAAGATCTGCAT 2351 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||| || | |||||| ||||| |||||||| || || || || || |||| || Sbjct 1715 ACCAGGTGGAGTGTGCTTTCCTTCTGAATATTATAGTCGCTGAGGGTGCGACCGTCCTCC 1656 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 || ||||| |||||||| ||||| ||||| || |||| || | || ||| ||||| | Sbjct 1655 AGTTGCTTTCCAGCGAAAATGAGACGCTGTTGATCGGGTGGGATGCCCTCTTTGTCTTGG 1596 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || ||| ||| | | | | |||||| || | || || |||| || ||||||||| Sbjct 1595 ATCTTTGTTTTCACGTTTTCAATCGTGTCACTGGGCTCGACTTCGAGAGTAATGGTTTTG 1536 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || ||||| || || || ||||| Sbjct 1535 CCGGTGAGGGTCTTCACGAAAATCTGCAT 1507 Score = 91.5 bits (100), Expect = 2e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 42966 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 43025 ||||| | ||| | |||| || |||||||||||| ||||| || | || || || Sbjct 2796 AAACGAAGCACAAGGTGCAGGGTCGACTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGG 2737 Query 43026 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCC 43085 | || || |||||||| || ||||| || | | ||||||||||| ||| | || |||| Sbjct 2736 CCATCTTCGAGCTGCTTGCCCGCGAAGATCAACCTCTGCTGGTCGGGCGGGATGCCCTCC 2677 Query 43086 TTGTCCATGATTTTTTGTTTGAGCG-TCGCCACCGTGTCGCTCGATTCCACATCGACCGT 43144 || | | ||| | || | | | || | | | ||||| || ||||| || | || Sbjct 2676 TTAT-CTTGAATCTTGGCCTTAACGTTTTCGATTGTGTCTGACGGCTCCACCTCCAGTGT 2618 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || || || ||||| || ||||| |||||||| Sbjct 2617 GATCGTCTTTCCGGTCAGCGTTTTCACAAAAATTTGCAT 2579 >seq10923 Length=28924 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||||||| || | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 20504 AAAAACTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 20563 Query 60117 TCACCACTATACTACCGAGGA 60137 | |||||||||||| |||||| Sbjct 20564 TAACCACTATACTAACGAGGA 20584 >seq25540 Length=47658 Score = 100 bits (110), Expect = 3e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| |||||| || | ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 30069 AAAAAATTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 30010 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||| |||||| Sbjct 30009 GACCACTATACTAACGAGGA 29990 >seq25055 Length=46323 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 3153 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 3212 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 3213 ATACTAACGAGGA 3225 >seq11963 Length=27246 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 17778 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 17719 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 17718 ATACTAACGAGGA 17706 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 17933 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 17874 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 17873 ATACTAACGAGGA 17861 >seq7979 Length=12407 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| |||| || | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 9662 AAAAATGAACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 9603 Query 60117 TCACCACTATACTACCGAGGA 60137 | |||||||||||| |||||| Sbjct 9602 TAACCACTATACTAACGAGGA 9582 >seq27404 Length=75800 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 69438 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 69497 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 69498 TACTAACGAGGAATG 69512 >seq24182 Length=11470 Score = 95.1 bits (104), Expect = 1e-14 Identities = 71/82 (87%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||| || ||| || | ||||||||||||| ||||||||||||||||||||| ||| Sbjct 7321 AAAAATAATCCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 7262 Query 60116 CTCACCACTATACTACCGAGGA 60137 || |||||||||||| |||||| Sbjct 7261 CTAACCACTATACTAACGAGGA 7240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571576264381920