Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq5480 131 1e-25 >seq5480 Length=41483 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 ||||| || |||||||| || ||||| |||||||||||||||||| |||| | || || Sbjct 2092 TACCAGATGGAGCGTGCTTTCTTTCTGGATGTTGTAGTCGTTCAGTGTGCGACCATCTTC 2033 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 ||| |||||||| ||||| || | ||||| || ||||| || | |||||||||||| Sbjct 2032 CAGCTGTTTTCCCGCGAAAATAAGACGCTGCTGATCGGGGGGAATACCCTCCTTGTCTTG 1973 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 ||||| ||| || | | |||| | |||||||||| || || ||||| Sbjct 1972 GATTTTAGTCTTGACGTTTTCAATCGTGTCGGCCGGTTCCACCTCCAATGTGATTGTCTT 1913 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| || || ||||| || || |||||||| Sbjct 1912 GCCGGTGAGGGTCTTGACGAATATTTGCAT 1883 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 ||||| ||| || ||||| ||||||||||| || |||||| | || |||| |||| || Sbjct 1716 TACCAGGTGGAGTGTGCTTTCCTTCTGAATATTATAGTCGCTGAGGGTGCGACCGTCCTC 1657 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 |||||| ||||| ||||| || | |||||||| ||||| || | ||||| ||||| Sbjct 1656 CAGTTGCTTTCCAGCGAAAATGAGACGCTGTTGATCGGGTGGGATGCCCTCTTTGTCTTG 1597 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 || ||| || || | | |||| | ||| || || | ||||| || || Sbjct 1596 GATCTTTGTTTTCACGTTTTCAATCGTGTCACTGGGCTCGACTTCGAGAGTAATGGTTTT 1537 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| || || |||||||| || || ||||| Sbjct 1536 GCCGGTGAGGGTCTTCACGAAAATCTGCAT 1507 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||| || |||||| |||||||||||||| || ||| | || || || || Sbjct 2782 GTGCAGGGTCGACTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCTTCGAGCTG 2723 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| ||||||| ||| |||||||| || | |||||||| || ||| || Sbjct 2722 CTTGCCCGCGAAGATCAACCTCTGCTGGTCGGGCGGGATGCCCTCCTTATCTTGAATCTT 2663 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 |||||| | | |||| ||||||||||| || |||||||| || || Sbjct 2662 GGCCTTAACGTTTTCGATTGTGTCTGACGGCTCCACCTCCAGTGTGATCGTCTTTCCGGT 2603 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 ||| || |||||||| |||||||| Sbjct 2602 CAGCGTTTTCACAAAAATTTGCAT 2579 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||||| ||||| ||||| || ||| |||| |||| ||| Sbjct 1482 GTGAAGAGTGGATTCCTTCTGGATGTTATAGTCCGAGAGGGTGCGCCCGTCCTCCAATTG 1423 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || ||||| || |||| || |||||| || ||||| | |||||||||||| ||||| Sbjct 1422 CTTGCCGGCAAAGATCAGCCTCTGTTGATCAGGAGGGATGCCCTCCTTGTCCTGGATTTT 1363 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 | || || | | | |||| ||| || || | ||||||||| ||||| || Sbjct 1362 TGTTTTCACATTCTCGATTGTGTCAGAGGGCTCGACGTCGAGGGTAATCGTTTTGCCGGT 1303 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || |||||||| ||||| ||||| Sbjct 1302 GAGGGTCTTCACGAAGATCTGCAT 1279 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||||||||||||||| || || |||| | || || || ||||| || ||||| Sbjct 2542 CTCCTTCTGAATGTTGTAATCAGACAAGGTGCGACCATCCTCGAGCTGTTTACCCGCGAA 2483 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||||||||| || || | ||||||||||| ||| || |||||| Sbjct 2482 GATGAGACGCTGTTGGTCAGGCGGAATGCCCTCCTTGTCTTGAATCTTCGTCTTAACATT 2423 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| | ||| ||||| | ||||| || ||||| || || || || || Sbjct 2422 TTCAATGGTGTCGCTTGGCTCAACCTCGAGCGTAATGGTTTTGCCAGTGAGCGTTTTGAC 2363 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 2362 GAAGATCTGCAT 2351 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGG--CGATCGTCGTCCAGT 45190 ||| || ||| |||||||| ||||| || || | || || || |||| || ||| Sbjct 1254 GTGAAGGGTGGATTCCTTCTGGATGTTATAATC--TGAGAGGGTCCGGCCGTCTTCTAGT 1197 Query 45191 TGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATT 45250 ||||| ||||| || ||||||| ||| || || || || | ||||| |||||| ||| Sbjct 1196 TGTTTGCCGGCAAAAATCAACCTCTGCTGATCCGGCGGGATGCCCTCTTTGTCCTGGATT 1137 Query 45251 TTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCC 45310 ||| ||| || | | | ||| || || || || | |||||||||||| || Sbjct 1136 TTTGTCTTTACGTTTTCGATCGTATCCGAGCCTTCGACGTCGAGGGTAATCGTCTTCCCA 1077 Query 45311 GTCAGAGTCTTCACAAAGATTTGCATGTT 45339 |||| || || || ||||||||||| || Sbjct 1076 GTCAACGTTTTGACGAAGATTTGCATTTT 1048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394912627049044