Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2599 398 7e-106 seq19961 232 6e-56 seq5480 125 6e-24 >seq2599 Length=48712 Score = 398 bits (440), Expect = 7e-106 Identities = 983/1480 (66%), Gaps = 43/1480 (3%) Strand=Plus/Minus Query 22103 GTCTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATG 22162 ||| ||||||| |||||||| || || | || || || || ||||| | ||||||||| Sbjct 37988 GTCCTGTCCACAGTAAACTGGATAGCTTGAGCTGCAGGCTTTGTGCGCAAGTAATACATG 37929 Query 22163 CCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTC 22222 || ||||| ||||| | || ||| ||||||| || || || |||| ||| | |||| | Sbjct 37928 CCTGTCTTGAGACCAAGCTCCCAGCCGTAAAAGTGCATTGATGTCAGTTTACTATAATTT 37869 Query 22223 GGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCG 22282 | |||||| || || |||||||| || || |||||||| || || |||||||| Sbjct 37868 GTTTCAGCCATGTGAACGTTTAACGACTGGCTTTGGTCGATAAAAGCACCGCGATCGGCT 37809 Query 22283 GCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATC 22342 ||||| || || | | | || || ||||| || || ||| || || ||| Sbjct 37808 GCCATCTTGATGATATTCTTCTGCGGGATCTCCCACACAGTGCGGTAAAGCAGCTTGAGA 37749 Query 22343 TCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATG--ATCAAATTTT 22400 ||| || || ||| || | | ||||| || ||||| ||| | | || | | Sbjct 37748 TCTTCTGGAAT--ATT-GAGCTTTTGGACAGAACCGTT-----GTAGGCCACCAGTTCGT 37697 Query 22401 TA---ATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCA 22457 || |||| || ||||||| || | | || | |||||| | || ||| |||||| Sbjct 37696 TACGCATCGCTTCACTCCACAATCCCAGTTCTGTGAGATCTTTAAGCAAATGGTGGTTCA 37637 Query 22458 CCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGA 22517 | || ||||||||||| ||||| || ||||| || | || |||| ||| || | Sbjct 37636 CTACCTGAAACTCGCCTGACAACACTCGGCGAGCATATACATTACTTGTGTACGCCTCAA 37577 Query 22518 AAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTA 22577 |||||||| || || |||||||| |||||||| || || ||||| || ||||| || | Sbjct 37576 TGGATTCATTATTGCCAAGTATCTGTGCGGTCGATGCCGTGGGCATGGGAGCCAATAGAA 37517 Query 22578 GCGAGTTTCTCAAGCCGTGCTTTGAAATTTT-ACTCTT-GAGCATCGACCAGTCCCACAG 22635 | ||| | | |||||| | || |||||| ||| | | || || ||||||||| || Sbjct 37516 GACTGTTCCGTACGCCGTGTTGTGCAATTTTCACTTTAAGTGCGTC--CCAGTCCCAAAG 37459 Query 22636 ATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCT 22695 | | || || ||| |||||||||| || ||||| | || | | || Sbjct 37458 AGAAGTAGGGGTGACAC---CCCACATATCATACTGCAATATACCCTTAGAGACAGGCGA 37402 Query 22696 GCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGC 22755 ||| | || || ||||| | || | | | | || ||||| ||||| || || ||||| Sbjct 37401 GCCAACATATGTCTCGTATGTGCCTTCAACCTCAGCTAGTTCACAGCTTGCTTCTAACGC 37342 Query 22756 GCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTA 22815 ||||| || || || || || || || ||||| | ||| || | ||| ||| | Sbjct 37341 ACCGTAGTAAATTGTTTCAAATATCTTTTTGTTAAGTTCCATTGCTTCCGGGCTATCGAA 37282 Query 22816 CGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCG 22875 || | |||||| || | || || || || | ||| || ||||| ||||| || || || Sbjct 37281 AGGTAGACGCATTATGATAAAAGCATCTGCAAGACCTTGTACGCCAATACCAATTGGACG 37222 Query 22876 GTT---TTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGT 22932 | ||| | | | || || || || || | || || | | ||| || | Sbjct 37221 ATGACGTTT--GTTGCCACGCTCA-GCTTCCGGGACTGGGTAATAGGTAACATCAATAAT 37165 Query 22933 TCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAAC 22992 | |||| | ||||| ||||||| |||||| | | ||||||||| Sbjct 37164 TTTGTTAAGGTTTCGTGTCACAAGTTTCGTCACCTCTTTTAATTTTTGGAAGTCGTAATA 37105 Query 22993 GCCCGA-TTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCT 23051 ||| ||| |||||| |||| || | ||||||||||| || || || | | Sbjct 37104 ACCCTCCTTG----ACAAACCGATTGAGCGCTAGAGAGGCAAGATTACAGACTGCAATTT 37049 Query 23052 CGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCA 23111 | || |||| |||||| | || ||| ||||||| ||| |||||| ||||| || | Sbjct 37048 CATCGGGAGACGAGTACTCAATAACTTCTGTACATAAATTAGAACACTTAATCGTTCCAA 36989 Query 23112 AATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCG 23171 || || ||||| || || || || | ||||||||||||||| ||||| ||||| | Sbjct 36988 CGTTTTGTTGATTGCTCTTACGGTTACATGCATCCTTGTAGAGCATATACGGGGTGCCAG 36929 Query 23172 TCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGT 23231 | || | ||| || | || || ||| | |||||||| | || |||| | | Sbjct 36928 TTTCAATCTGGCTATCAAGAATAGCATACCAAAGTTTCTGAGCGGGCACCTGTCGTAAAT 36869 Query 23232 ACCTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGG 23291 | | |||||| ||||| |||| ||||||| |||||| || | || | |||||| Sbjct 36868 AGCGGCCTTCCATTTCGTATTTTTCGTACAACTTGTCAAACTCTTCTCCCCAGCAGTCGC 36809 Query 23292 CCAGGCCGGG---CGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGC 23348 | || || ||| | | |||||||| || ||| | |||||| || || Sbjct 36808 TTAAACCAGGACACGAGT---TGGGACACATAAGTGACCAACT---GTCATTATCGGCGA 36755 Query 23349 GTCT---CATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCT 23405 ||| |||||| ||||| || ||||| || || ||||| || || || || || | Sbjct 36754 CTCTACGCATAAACAGATCAGGAATCCAAAGTGCATAGAAGAGATCACGCGCACGATGTT 36695 Query 23406 CCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCT 23465 | || ||||||| || ||| || || | || || || | ||| | ||||| |||| Sbjct 36694 CTTCGATGCCGGTATTTTTTCGCAGGTCGAGGAATTCGAAAATGTCTCCGTGCCATGGCT 36635 Query 23466 CGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCG 23525 | || |||| |||||||| || || || ||||| || ||||| || || || ||||| | Sbjct 36634 CCAGATAAATAGCAAACGCACCTGGCCTTTTATTTCCCCCCTGGTCAACATACCGGGCAG 36575 Query 23526 TGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGA 23565 | || ||||| || | |||||| || |||| ||| || || Sbjct 36574 TATTATTGTATACGCGTAGCATGGGTACGATACCATTCGA 36535 >seq19961 Length=25414 Score = 232 bits (256), Expect = 6e-56 Identities = 471/690 (68%), Gaps = 12/690 (2%) Strand=Plus/Plus Query 57744 AGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCC 57803 || || || ||||| ||||| |||||||||||| | ||||| ||||| ||||| | Sbjct 14193 AGGTTCTCCCAAGACGTGCAGGTGACGGAGGCGCGCTGCTTCTACGGGTTTCAGATCATG 14252 Query 57804 ATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAAC 57863 || || ||| | ||||| ||||||||||| || | || | || ||| | | || | Sbjct 14253 ATGGAGAACATTCATTCGGAAATGTATTCTCTCTTACTCAACACCTACATCACCGATCCC 14312 Query 57864 GACGAGAAACGTAGAC-TGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGC 57922 | ||| || || | |||||||| ||||| || ||||| ||| |||||||| Sbjct 14313 CAGGAGCG-CGACCACCTCTTCAACGCCATCGAGACGATGCCATGCATCAAAAAGAAGGC 14371 Query 57923 AGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGC 57982 || ||| | | ||||| | || | ||||| | || |||| | | |||| Sbjct 14372 CGACTGGGCCCTTGCCTGGATCGGGAACGACGACGCCACCTACGGCGAGCGCGTCGTCGC 14431 Query 57983 GTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT-GCGGCAATATTTTGGATGA 58041 |||||| |||||||| || || ||||| || |||||| || | || || ||||||| Sbjct 14432 GTTCGCGGCCGTCGAGGGCATCTTCTTCAGCGG-AGCTTTCGCCTCGATCTTCTGGATGA 14490 Query 58042 AGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGG 58101 |||||||||| || | ||||| || || | || |||||| | || || ||||| |||| Sbjct 14491 AGAAACGCGGACTCCTACCCGGGCTCACCTACAGTAACGAGCTCATCTCACGCGATGAGG 14550 Query 58102 GTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGG 58161 | | ||||| || || || ||| | |||| | || | ||||| || |||| | || Sbjct 14551 GCATGCATACGGAGTTCGCCTGCTTGATGTTTTGGCATCTGGTCAACAAGCCGAGCCAGG 14610 Query 58162 ATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAG 58221 | | ||| | ||||||| || ||||| || |||||| | ||||| ||||||| | Sbjct 14611 AGAGAATCCACCAGATTATCAAGGATGCGGTAGCTATCGAACAGGAGTTCCTCACCGAGG 14670 Query 58222 CCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTG 58281 | || || || ||||||||||| |||||| ||| | ||| ||||||| ||||||| Sbjct 14671 CTCTGCCTGTTGCCATGCTCGGCATGAACTGCGATCTCATGAAGCAGTACATCGAGTTTG 14730 Query 58282 TTGCCGACAGACTTTTGCTCGAACT-GATTG-GAGAGCGTCATTA--CAACACGAAAAAT 58337 | ||||| || | ||| || || || || | |||| ||| | | ||| Sbjct 14731 TGGCCGATCACCTGCTTAGCGATCTAGACTGTGACA----AATTATGGAACTCCGAGAAT 14786 Query 58338 CCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaa 58397 || || ||||| ||| | | ||||| | || ||||| || ||||| ||||| || Sbjct 14787 CCCTTCGATTTCATGGAGCAAATCTCCATGGAAGGCAAAACTAACTTCTTCGAGAAGCGT 14846 Query 58398 GTTAGCGAATATCAAAAATACGGCGTGATG 58427 || | || ||||| ||| |||||| ||| Sbjct 14847 GTCGGGGAGTATCAGAAAGCCGGCGTCATG 14876 >seq5480 Length=41483 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || ||||| || ||||| | || || |||||| || Sbjct 1883 ATGCAAATATTCGTCAAGACCCTCACCGGCAAGACAATCACATTGGAGGTGGAACCGGCC 1942 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| ||||| | ||| |||||||| || | || ||||| ||| Sbjct 1943 GACACGATTGAAAACGTCAAGACTAAAATCCAAGACAAGGAGGGTATTCCCCCCGATCAG 2002 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| || |||||| ||||||| | || ||| ||| || ||| Sbjct 2003 CAGCGTCTTATTTTCGCGGGAAAACAGCTGGAAGATGGTCGCACACTGAACGACTACAAC 2062 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || |||||| || || ||||||||||| Sbjct 2063 ATCCAGAAAGAAAGCACGCTCCATCTGGTACT 2094 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||||||||| ||| ||||||| || || || Sbjct 1279 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAAACGATTACCCTCGACGTCGAGCCCTCT 1338 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || ||| | ||| ||||||||| ||| | || || || || Sbjct 1339 GACACAATCGAGAATGTGAAAACAAAAATCCAGGACAAGGAGGGCATCCCTCCTGATCAA 1398 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || ||||| || ||||| ||| || | || |||||| Sbjct 1399 CAGAGGCTGATCTTTGCCGGCAAGCAATTGGAGGACGGGCGCACCCTCTCGGACTATAAC 1458 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || ||||| |||||||| || || || Sbjct 1459 ATCCAGAAGGAATCCACTCTTCACCTCGTCCT 1490 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| |||||||| ||||| || || |||| || || ||||| ||| ||||||| ||| Sbjct 1047 AAAAATGCAAATCTTCGTCAAAACGTTGACTGGGAAGACGATTACCCTCGACGTCGAAGG 1106 Query 31249 GTCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 || || | |||||| || || ||| | ||| |||||| || ||| | ||||| | Sbjct 1107 CTCGGATACGATCGAAAACGTAAAGACAAA-AATCCAGGACAAAGAGGGCATCCCGCCGG 1165 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 | |||||| | | || || || |||||||| | |||||| ||| | |||| Sbjct 1166 ATCAGCAGAGGTTGATTTTTGCCGGCAAACAACTAGAAGACGGCCGGACCCTCTCAGATT 1225 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||||| || || ||||| || ||||| || || || Sbjct 1226 ATAACATCCAGAAGGAATCCACCCTTCACCTCGTCCT 1262 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || || ||||| || || |||||||| | || || || ||||| Sbjct 2579 ATGCAAATTTTTGTGAAAACGCTGACCGGAAAGACGATCACACTGGAGGTGGAGCCGTCA 2638 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| || || | || || ||||| ||| | |||||||||||| Sbjct 2639 GACACAATCGAAAACGTTAAGGCCAAGATTCAAGATAAGGAGGGCATCCCGCCCGACCAG 2698 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || ||||| ||||| ||| | ||||| || | || || ||| Sbjct 2699 CAGAGGTTGATCTTCGCGGGCAAGCAGCTCGAAGATGGCCGCACCCTTTCAGACTACAAC 2758 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 |||||||| || ||||| || || || || ||| Sbjct 2759 ATTCAAAAGGAGTCGACCCTGCACCTTGTGCTT 2791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445578264290880