Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2599 318 7e-82 seq19961 149 8e-31 >seq2599 Length=48712 Score = 318 bits (352), Expect = 7e-82 Identities = 980/1498 (65%), Gaps = 31/1498 (2%) Strand=Plus/Minus Query 62029 TTTTATCCTTGTCCAATGTGAATTGAATGG---GAGCGGATGCGGGTTTCGTACGTAGAT 62085 |||| |||| ||||| || || || || | |||| ||| || || || || | | Sbjct 37992 TTTTGTCCT-GTCCACAGTAAACTGGATAGCTTGAGC---TGCAGGCTTTGTGCGCAAGT 37937 Query 62086 AGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGG 62145 | ||||| || || || ||||| || ||| |||||||| ||||| || ||||| Sbjct 37936 AATACATGCCTGTCTTGAGACCAAGCTCCCAGCCGTAAAAGTGCATTGATGTCAGTTTAC 37877 Query 62146 AATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCC 62205 |||| | | || || || || | || | || || ||||| ||||| || || || | Sbjct 37876 TATAATTTGTTTCAGCCATGTGAACGTTTAACGACTGGCTTTGGTCGATAAAAGCACCGC 37817 Query 62206 TGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTC 62265 || || ||||| || ||||| |||| || | || ||||| | ||| |||| Sbjct 37816 GATCGGCTGCCATCTTGATGATATTCTTCTGCGGGATCTCCCACACAGTGCGGTAAAGCA 37757 Query 62266 GCTTAATATCTTCTGGAAGGTTTGTATTCTGAATGGATCCACCATCTACCATAATCCTAT 62325 |||| | ||||||||||| || || || | || || | ||| || | Sbjct 37756 GCTTGAGATCTTCTGGAATATTGAGCTTTTGGACAGAACCGTTGTAGGCCA----CCAGT 37701 Query 62326 TCTTGA----TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGG 62381 || | | || | ||| |||| ||| || || | | || |||| | ||| || Sbjct 37700 TCGTTACGCATCGCTTCACTCCACAATCCCAGTTCTGTGAGATCTTTAAGCAAATGGTGG 37641 Query 62382 TTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 62441 || ||||| || || || || ||||| |||| |||| || | |||||| || |||| Sbjct 37640 TTCACTACCTGAAACTCGCCTGACAACACTCGGCGAGCATATACATTACTTGTGTACGCC 37581 Query 62442 TCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 62501 || | || |||||||| || | || || || || ||||| || ||||| || |||| Sbjct 37580 TCAATGGATTCATTATTGCCAAGTATCTGTGCGGTCGATGCCGTGGGCATGGGAGCCAAT 37521 Query 62502 AATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGATGTTCCCAATTCC 62559 | | ||| || | | |||| ||| || ||||| |||| || ||||| | || Sbjct 37520 AGAAGACTGTTCCGTACGCCGT--GTTGTGCAATTTTCACTTTAAGTGCGTCCCAGTCCC 37463 Query 62560 AAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACG 62619 ||||| | || ||| ||| || | ||||| ||| | | || Sbjct 37462 AAAGAGAAGTAGGGGTGACACCCCACATATCATACTGCAATATACCCTTAGAGACAGGCG 37403 Query 62620 ATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATG 62679 | || |||||||| || |||| ||||| ||||||||||| ||| || || ||||| | Sbjct 37402 AGCCAACATATGTCTCGTATGTGCCTTCAACCTCAGCTAGTTCACAGCTTGCTTCTAACG 37343 Query 62680 CACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAA 62739 ||||||| ||||| |||||||| ||||| || || || || ||||||||||||||| | Sbjct 37342 CACCGTAGTAAATTGTTTCAAATATCTTTTTGTTAAGTTCCATTGCTTCCGGGCTATCGA 37283 Query 62740 ATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTC 62799 | || | | | ||||| || || || | ||||| || |||||||| || || | Sbjct 37282 AAGGTAGACGCATTATGATAAAAGCATCTGCAAGACCTTGTACGCCAATACCAATTGGAC 37223 Query 62800 TATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 62859 ||| | || || |||||||| || | || ||||| ||| ||| ||||||| Sbjct 37222 GATGACGTTTGTTGCCACGCTCAGCTTCCGGGACTGGGTAATAGGTAACATCAATAATTT 37163 Query 62860 TATTGAGATTTC-TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATC-AAATCG 62917 | || || |||| || | | | ||| ||| || || | ||| | || || ||| Sbjct 37162 TGTTAAGGTTTCGTGTC-ACAAGTTTCGTCACCTCTTTTAATTTTTGGAAGTCGTAATAA 37104 Query 62918 CCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATT 62977 ||| || | |||||| || | || | ||| || |||||||| || || | |||| Sbjct 37103 CCC-TCCTTGACAAACCGATTGAGCGCTAGAGAGGCAAGATTACAGACTGCAATTTCATC 37045 Query 62978 AGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATT 63037 | | || || | || | || || || | |||| |||||| || ||||| | || Sbjct 37044 GGGAGACGAGTACTCAATAACTTCTGTACATAAATTAGAACACTTAATCGTTCCAACGTT 36985 Query 63038 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTC 63097 ||||||||| ||||| |||||| |||||||| || || || | || || |||||||| Sbjct 36984 TTGTTGATTGCTCTTACGGTTACATGCATCCTTGTAGAGCATATACGGGGTGCCAGTTTC 36925 Query 63098 AATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTA-TTATAGATTTGTAT 63155 |||||| || | ||| || | ||| | | || |||| | | | | | || Sbjct 36924 AATCTGGCTATCAAGAATAGCATACCA-AAGTTTCTGAGCGGGCACCTGTCG-TAAATAG 36867 Query 63156 CTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCC 63215 | | ||| |||||||| ||||| || ||||| |||||||| | | Sbjct 36866 CGGCCTTCCATTTCGTATTTTTCGTACAACTTGTCAAACTCTTCTCCCCAGCAGTCGCTT 36807 Query 63216 AATCTAGGACATTCATCCGGACACATCAACGACC-ACTCTCCGTCATCCTTCACTCGTTT 63274 || | |||||| | |||||||| | |||| ||| | | | ||| |||| Sbjct 36806 AAACCAGGACACGAGTTGGGACACATAAGTGACCAACTGT-CATTATCGGCGACTCTACG 36748 Query 63275 CATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGT 63333 |||||| ||||||||||||||||| || ||| || ||||| | | | |||||| ||| Sbjct 36747 CATAAACAGATCAGGAATCCAAAGTGC-ATAGAAGAGATCACGCGCACGATGTTCTTCGA 36689 Query 63334 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63393 | || ||||| ||| || |||||||| | | ||| || ||||| || |||| | Sbjct 36688 TGCCGGTATTTTTTCGCAGGTCGAGGAATTCGAAAATGTCTCCGTGCCATGGCTCCAGAT 36629 Query 63394 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63453 | || || | | || |||| ||| ||||| ||||| || | || | || || |||| Sbjct 36628 AAATAGCAAACGCACCTGGCCTTTTATTTCCCCCCTGGTCAACATACCGGGCAGTATTAT 36569 Query 63454 TATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATA 63511 | || || | | ||| || | ||||| || || | ||||| ||||| | ||||| Sbjct 36568 TGTATACGCGTAGCATGGGTACGATACCATTCGAAGTTCCATTTGTACCAGCTATATA 36511 >seq19961 Length=25414 Score = 149 bits (164), Expect = 8e-31 Identities = 435/666 (65%), Gaps = 13/666 (2%) Strand=Plus/Minus Query 33290 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33349 ||| || || || || ||||| || ||||| || |||||||| ||||||| || || | Sbjct 14864 TTTCTGATACTCCCCGACACGCTTCTCGAAGAAGTTAGTTTTGCCTTCCATGGAGATTTG 14805 Query 33350 TTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAAT 33409 ||||||||||| || ||||| || | | ||| | | | | | || || Sbjct 14804 CTCCATGAAATCGAAGGGATTCTCGGAGTTCCATAATTTGTCACAGTCTAGATCGCTAAG 14745 Query 33410 CAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAG 33469 || ||| || || || || || || ||||| | || || ||||| || | | Sbjct 14744 CAGGTGATCGGCCACAAACTCGATGTACTGCTTCATGAGATCGCAGTTCATGCCGAGCAT 14685 Query 33470 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAAT 33529 ||| || |||||| | || || || || ||||| || | |||||||| | ||||| Sbjct 14684 GGCAACAGGCAGAGCCTCGGTGAGGAACTCCTGTTCGATAGCTACCGCATCCTTGATAAT 14625 Query 33530 AAATCTAACGGTTTCT----TCACTCGG-TGGATGTAATAAATGTTTAAACATCAAACAT 33584 || || |||| | ||||| | | || | | ||| ||||||||| || Sbjct 14624 ----CTGGTGGATTCTCTCCTGGCTCGGCTTGTTG-ACCAGATGCCAAAACATCAAGCAG 14570 Query 33585 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCG 33644 ||||| || |||| ||||| || | || | |||||| | ||||| ||| Sbjct 14569 GCGAACTCCGTATGCATGCCCTCATCGCGTGAGATGAGCTCGTTACTGTAGGTGAGCCCG 14510 Query 33645 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATT 33704 || | || || || || || | ||| || || || ||||| | |||| |||||||| Sbjct 14509 GGTAGGAGTCCGCGTTTCTTCATCCAGAAGATCGAGGCGAAAGCTCCGCTGAAGAAGATG 14450 Query 33705 CCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT---ATC 33761 || || || || || || || | | | ||| || || |||| ||| | ||| Sbjct 14449 CCCTCGACGGCCGCGAACGCGACGACGCGCTCGCCGTAGGTGGCGTCGTCGTTCCCGATC 14390 Query 33762 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 33821 || | ||||| |||||||||||||| | || |||||||| || ||||| || ||| Sbjct 14389 CAGGCAAGGGCCCAGTCGGCCTTCTTTTTGATGCATGGCATCGTCTCGATGGCGTTGAAG 14330 Query 33822 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 33881 || | || || | ||| | | || || | || || ||| |||||||||| Sbjct 14329 AGGTGGTCGCGCTCCTGGGGATCGGTGATGTAGGTGTTGAGTAAGAGAGAATACATTTCC 14270 Query 33882 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGC 33941 ||||||||||| || || |||||||| |||||||| || | ||||| || | |||| Sbjct 14269 GAATGAATGTTCTCCATCATGATCTGAAACCCGTAGAAGCAGCGCGCCTCCGTCACCTGC 14210 Query 33942 ACTTCT 33947 || ||| Sbjct 14209 ACGTCT 14204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629551785481920