Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2599 170 2e-37 >seq2599 Length=48712 Score = 170 bits (188), Expect = 2e-37 Identities = 797/1245 (64%), Gaps = 33/1245 (3%) Strand=Plus/Minus Query 37127 GTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTAT 37186 |||| || || |||||||| || || || || |||| | | ||||| ||| || || | Sbjct 37644 GTGG-TTCACTACCTGAAACTCGCCTGACAACACTCGGCGAGCATATACATTACTTGTGT 37586 Query 37187 ATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTG 37246 | | |||||||| |||||||| | | ||| || | || ||||| || ||||| || | Sbjct 37585 ACGCCTCAATGGATTCATTATTGCCAAGTATCTGTGCGGTCGATGCCGTGGGCATGGGAG 37526 Query 37247 CTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAAT 37306 | | |||||| || || | | || ||| |||| || ||| ||| | | ||| | Sbjct 37525 CCAATAGAAGACTGTTCCGTACGCCGTGTTGTGCAATTTTCACTTTAAGTGCGTCCCAGT 37466 Query 37307 CCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTG 37366 |||| | | || ||| | |||||||||||| || | ||||| ||| | | Sbjct 37465 CCCAAAGAGAAGTAGGGGTGACACCCCACATATCATACTGCAATATACCCTTAGAGACAG 37406 Query 37367 GAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTA 37426 | || | ||||||||| || | || | || | ||||||||| || || | ||||| Sbjct 37405 GCGAGCCAACATATGTCTCGTATGTGCCTTCAACCTCAGCTAGTTCACAGCTTGCTTCTA 37346 Query 37427 GTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTAT 37486 || | || || |||||||| || || | | | || | | ||||||| ||||| Sbjct 37345 ACGCACCGTAGTAAATTGTTTCAAATATCTTTTTGTTAAGTTCCATTGCTTCCGGGCTAT 37286 Query 37487 CGAATGCATAG-CCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATG 37545 |||| | ||| | || || ||||| |||| || | ||| || || || ||||| || Sbjct 37285 CGAAAG-GTAGACGCATTATGATAAAAGCATCTGCAAGACCTTGTACGCCAATACCAATT 37227 Query 37546 GGTCTAT---GTTTCTTATTA-GATCTAGACGATTCTATCACTGGATAATAATTGATATC 37601 || | || |||| || | | || | ||| ||||| ||||| | | ||| Sbjct 37226 GGACGATGACGTTTGTTGCCACGCTC----AGCTTCCGGGACTGGGTAATAGGTAACATC 37171 Query 37602 TATTATTTTATTTAGATT---TTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAA 37658 || ||||| || || || | | || || |||||| | | | || || | ||| Sbjct 37170 AATAATTTTGTTAAGGTTTCGTGTCACAAG---TTTCGTCACCTCTTTTAATTTTTGGAA 37114 Query 37659 --CATAAATACGTTATTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACA 37716 | ||| || | || ||||| | | | || | ||| | |||||||| || Sbjct 37113 GTCGTAATAAC--CCTCCTTGACAAACCGATTGAGCGCTAGAGAGGCAAGATTACAGACT 37056 Query 37717 GCAACTTCATCTTCGTTACTA-AATTGTATAATCTCTGTACAGAGATTACTCGATCTAAT 37775 |||| |||||| | || | | | |||| |||||||| | |||| | |||| Sbjct 37055 GCAATTTCATC-GGGAGACGAGTACTCAATAACTTCTGTACATAAATTAGAACACTTAAT 36997 Query 37776 TGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGG 37835 ||||| | || ||||||| || ||||| | ||| || || || |||||||| Sbjct 36996 CGTTCCAACGTTTTGTTGATTGCTCTTACGGTTACATGCATCCTTGTAGAGCATATACGG 36937 Query 37836 CGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCT-TGCTTTAACGA 37894 || || ||| || || || | ||||| | ||| || |||| || || Sbjct 36936 GGTGCCAGTTTCAATCTGGCTATCAAGAATAGCATACCA-AAGTTTCTGAGCGGGCAC-C 36879 Query 37895 TCGCTTTAAtttttttCTT-TGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCC 37953 | | | ||| ||| ||||||||| | || || |||| ||| || | ||| Sbjct 36878 TGTCGTAAATAGCGGCCTTCCATTTCGTATTTTTCGTACAACTTGTCAAACTCTTCTCCC 36819 Query 37954 CATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTT 38013 || |||| ||| || ||||| | |||||||| || ||||| |||| | Sbjct 36818 CAGCAGTCGCTTAAACCAGGACACGAGTTGGGACACATAAGTGACCAACTGTCATTATCG 36759 Query 38014 TCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTA 38073 | || | |||||| | |||||| | ||| | |||| || | ||| | | | Sbjct 36758 GCGACTCTACGCATAAACAGATCAGGAATCCAAAGTGCATAGAAGAGATCACGCGCACGA 36699 Query 38074 TATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCAT 38133 | ||||||| | || ||| |||| | | || || ||||| || || |||||||| Sbjct 36698 TGTTCTTCGATGCCGGTATTTTTTCGCAGGTCGAGGAATTCGAAAATGTCTCCGTGCCAT 36639 Query 38134 GGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTA 38193 || || | |||||| | | || ||||| ||||||| || ||||| | || ||| | Sbjct 36638 GGCTCCAGATAAATAGCAAACGCACCTGGCCTTTTATTTCCCCCCTGGTCAACATACCGG 36579 Query 38194 ACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCG 38253 | || ||||| |||| | || ||| ||||| |||||||| || | || ||| |||| Sbjct 36578 GCAGTATTATTGTATACGCGTAGCATGGGTACGATACCATTCGAAGTTCCATTTGTACCA 36519 Query 38254 GATATATAAGTACCCTTAGCTCGTATATTAC---TTATCGACAATCCTATTCCACCTGCA 38310 | |||||||| |||| |||| | || ||| ||| | ||| || ||||| ||| Sbjct 36518 GCTATATAAG-ACCC--AGCTGGCCTAATACAGTGTATGTTAATTCCAATGCCACCAGCA 36462 Query 38311 TGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCT 38355 ||| || || | ||| || || | ||||||| | || ||| Sbjct 36461 GATTTAGAGATGAGAGCACACTGACGAAGCGTATCATAAATTCCT 36417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468327059108160