Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq2939 95.1 1e-14 >seq2939 Length=42873 Score = 95.1 bits (104), Expect = 1e-14 Identities = 267/408 (65%), Gaps = 8/408 (2%) Strand=Plus/Minus Query 20934 ACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGG 20993 |||||| | ||| || || | |||||| || || ||||| || || || | || Sbjct 15451 ACGTGGGTTAAGTACACATGTGTGTCACCAGTCGTATGGACAAAATCCCCAGGCTTAAGA 15392 Query 20994 CCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACC 21053 || || ||||||||| | || ||| || || ||||| ||| ||||| ||||| || Sbjct 15391 CCAGTATAGTGAGCGATGATATGCGTGAGCAGAGCGTACGAGGCAATGTTGAACGGCACA 15332 Query 21054 CCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACG 21113 || |||||||||||||| | ||||||| || || |||| ||| || || ||| Sbjct 15331 CCTAGGCCCATGTCGGCACTGCGTTGGTACAATTGACACGACAACTCACCGTTGGCAACG 15272 Query 21114 TAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTC 21173 || ||||| || ||| || || || || |||||| | | ||||| | ||| Sbjct 15271 TAGAACTGCGCCAGGCAGTGGCACGGTGGAAGCGCCATCTTCTTCAAGTCCGAGACATTC 15212 Query 21174 CACGCGCACATAACGATGCGCCGATCGTGGGG---CCGCCTGTTAAT-TAGATCCACCAC 21229 || || | | || ||||| || || | || |||| | | ||| | Sbjct 15211 CAAGCAGATAAAATAATGCGGCGGTCATCCGGATTAACCCTGAGCGTGTCGATAATCTGG 15152 Query 21230 GTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGC 21289 ||| | ||||| || |||||| || ||||| ||||| | ||||| | || Sbjct 15151 GTA----ATTTGGTCAACGCCCTGATCCGTGTAGTCGGCGTGCATATCGCTGTATGCAGC 15096 Query 21290 CCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTC 21337 || || || | ||||||||| ||||| || || || ||||||||||| Sbjct 15095 TCCGAAGTGACGCCACTGGAAGCCGTATACGGGGCCGAGATCGCCCTC 15048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427599970710720